Human Gene ZNF835 (uc031rne.1) Description and Page Index
  Description: Homo sapiens zinc finger protein 835 (ZNF835), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr19:57,174,953-57,176,566 Size: 1,614 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr19:57,174,953-57,176,566 Size: 1,614 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsGene AllelesMicroarray ExpressionProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:57,174,953-57,176,566)mRNA (may differ from genome)Protein (537 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaCGAP
Entrez GeneExonPrimerGeneCardsHGNCHPRDLynx
MGIneXtProtPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: ZN835_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein 835;
FUNCTION: May be involved in transcriptional regulation.
SUBCELLULAR LOCATION: Nucleus (Probable).
SIMILARITY: Belongs to the krueppel C2H2-type zinc-finger protein family.
SIMILARITY: Contains 14 C2H2-type zinc fingers.
SEQUENCE CAUTION: Sequence=AAD23609.1; Type=Erroneous gene model prediction;

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type

SCOP Domains:
48695 - Multiheme cytochromes
57667 - C2H2 and C2HC zinc fingers

ModBase Predicted Comparative 3D Structure on Q9Y2P0
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  LP896147 - Sequence 1011 from Patent EP3253886.
AK023017 - Homo sapiens cDNA FLJ12955 fis, clone NT2RP2005496, moderately similar to ZINC FINGER PROTEIN 135.
AK299565 - Homo sapiens cDNA FLJ54874 complete cds, moderately similar to Zinc finger protein 135.
JD370327 - Sequence 351351 from Patent EP1572962.
JD265142 - Sequence 246166 from Patent EP1572962.
JD371477 - Sequence 352501 from Patent EP1572962.
JD210726 - Sequence 191750 from Patent EP1572962.
JD129355 - Sequence 110379 from Patent EP1572962.
JD458651 - Sequence 439675 from Patent EP1572962.
JD462139 - Sequence 443163 from Patent EP1572962.
JD336667 - Sequence 317691 from Patent EP1572962.
JD461218 - Sequence 442242 from Patent EP1572962.
JD382979 - Sequence 364003 from Patent EP1572962.
JD201092 - Sequence 182116 from Patent EP1572962.
JD382979 - Sequence 364003 from Patent EP1572962.
JD483953 - Sequence 464977 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z5Y0, CCDS56105, G3V1S0, NM_001005850, NP_001005850, Q9Y2P0, uc010ygn.2, ZN835_HUMAN
UCSC ID: uc031rne.1
Representative RNA: CCDS56105 Protein: Q9Y2P0 (aka ZN835_HUMAN)
CCDS: CCDS56105.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: CCDS56105.1
exon count: 1CDS single in 3' UTR: no RNA size: 1614
ORF size: 1614CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3380.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.