Human Gene SChLAP1 (uc031rqe.1) Description and Page Index
  Description: Homo sapiens Second Chromosome Locus Associated with Prostate 1 isoform 1 (SChLAP1), complete sequence.
Transcript (Including UTRs)
   Position: hg19 chr2:181,556,831-181,781,666 Size: 224,836 Total Exon Count: 7 Strand: +


Page IndexSequence and LinksMalaCardsOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:181,556,831-181,781,666)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerPubMed
Stanford SOURCE

-  MalaCards Disease Associations
  MalaCards Gene Search: SChLAP1
Diseases sorted by gene-association score: prostate cancer 1 (4), prostate cancer (2)

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  JX117418 - Homo sapiens Second Chromosome Locus Associated with Prostate 1 isoform 1 (SChLAP1), complete sequence.
JX117419 - Homo sapiens Second Chromosome Locus Associated with Prostate 1 isoform 2 (SChLAP1), complete sequence.
JX117420 - Homo sapiens Second Chromosome Locus Associated with Prostate 1 isoform 3 (SChLAP1), complete sequence.
JX117421 - Homo sapiens Second Chromosome Locus Associated with Prostate 1 isoform 4 (SChLAP1), complete sequence.
JX117422 - Homo sapiens Second Chromosome Locus Associated with Prostate 1 isoform 5 (SChLAP1), complete sequence.
JX117423 - Homo sapiens Second Chromosome Locus Associated with Prostate 1 isoform 6 (SChLAP1), complete sequence.
JX117424 - Homo sapiens Second Chromosome Locus Associated with Prostate 1 isoform 7 (SChLAP1), complete sequence.
JD535660 - Sequence 516684 from Patent EP1572962.
JD404571 - Sequence 385595 from Patent EP1572962.
JD404569 - Sequence 385593 from Patent EP1572962.
JD404570 - Sequence 385594 from Patent EP1572962.
JD214698 - Sequence 195722 from Patent EP1572962.
JD440659 - Sequence 421683 from Patent EP1572962.
JD062775 - Sequence 43799 from Patent EP1572962.
JD469232 - Sequence 450256 from Patent EP1572962.
JD535661 - Sequence 516685 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: JX117421
UCSC ID: uc031rqe.1
Representative RNA: JX117421

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: JX117421.1
exon count: 7CDS single in 3' UTR: no RNA size: 1675
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 50.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.