Human Gene DSTN (ENST00000449141.2) from GENCODE V44
  Description: Contains 1 ADF-H domain. (from UniProt F6RFD5)
RefSeq Summary (NM_006870): The product of this gene belongs to the actin-binding proteins ADF family. This family of proteins is responsible for enhancing the turnover rate of actin in vivo. This gene encodes the actin depolymerizing protein that severs actin filaments (F-actin) and binds to actin monomers (G-actin). Two transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000449141.2
Gencode Gene: ENSG00000125868.16
Transcript (Including UTRs)
   Position: hg38 chr20:17,570,090-17,607,222 Size: 37,133 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr20:17,570,209-17,605,129 Size: 34,921 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:17,570,090-17,607,222)mRNA (may differ from genome)Protein (135 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
LynxMalacardsMGIPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: F6RFD5_HUMAN
DESCRIPTION: SubName: Full=Destrin;
SIMILARITY: Contains 1 ADF-H domain.
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DSTN
Diseases sorted by gene-association score: necatoriasis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 958.67 RPKM in Artery - Tibial
Total median expression: 7863.75 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -50.30119-0.423 Picture PostScript Text
3' UTR -61.90268-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002108 - Actin-bd_cofilin/tropomyosin
IPR017904 - ADF/Cofilin/Destrin

Pfam Domains:
PF00241 - Cofilin/tropomyosin-type actin-binding protein

ModBase Predicted Comparative 3D Structure on F6RFD5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding

Biological Process:
GO:0030042 actin filament depolymerization
GO:0030836 positive regulation of actin filament depolymerization
GO:0051014 actin filament severing

Cellular Component:
GO:0005622 intracellular
GO:0015629 actin cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  EU794606 - Homo sapiens epididymis luminal protein 32 (HEL32) mRNA, complete cds.
AK315994 - Homo sapiens cDNA, FLJ78893 complete cds, highly similar to Destrin.
BC009477 - Homo sapiens destrin (actin depolymerizing factor), mRNA (cDNA clone MGC:15087 IMAGE:3938287), complete cds.
GQ900922 - Homo sapiens clone HEL-T-34 epididymis secretory sperm binding protein mRNA, complete cds.
AK312645 - Homo sapiens cDNA, FLJ93031, Homo sapiens destrin (actin depolymerizing factor) (DSTN), mRNA.
BX647319 - Homo sapiens mRNA; cDNA DKFZp686O20275 (from clone DKFZp686O20275).
S65738 - actin depolymerizing factor [human, fetal brain, mRNA, 1452 nt].
AK302338 - Homo sapiens cDNA FLJ52030 complete cds, highly similar to Destrin.
AK308562 - Homo sapiens cDNA, FLJ98603.
CR457042 - Homo sapiens full open reading frame cDNA clone RZPDo834B0515D for gene DSTN, destrin (actin depolymerizing factor); complete cds, incl. stopcodon.
AB529054 - Synthetic construct DNA, clone: pF1KB3718, Homo sapiens DSTN gene for destrin, without stop codon, in Flexi system.
CR541956 - Homo sapiens full open reading frame cDNA clone RZPDo834H0334D for gene DSTN, destrin (actin depolymerizing factor); complete cds, without stopcodon.
JF432564 - Synthetic construct Homo sapiens clone IMAGE:100073796 destrin (actin depolymerizing factor) (DSTN) gene, encodes complete protein.
KJ893208 - Synthetic construct Homo sapiens clone ccsbBroadEn_02602 DSTN gene, encodes complete protein.
JD265714 - Sequence 246738 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC009477, ENST00000449141.1, F6RFD5, F6RFD5_HUMAN, uc061vnz.1
UCSC ID: ENST00000449141.2
RefSeq Accession: NM_006870
Protein: F6RFD5

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.