Human Gene VIPR2 (ENST00000377633.7) from GENCODE V44
  Description: Homo sapiens vasoactive intestinal peptide receptor 2 (VIPR2), transcript variant 4, mRNA. (from RefSeq NM_001308259)
RefSeq Summary (NM_001308259): This gene encodes a receptor for vasoactive intestinal peptide, a small neuropeptide. Vasoactive intestinal peptide is involved in smooth muscle relaxation, exocrine and endocrine secretion, and water and ion flux in lung and intestinal epithelia. Its actions are effected through integral membrane receptors associated with a guanine nucleotide binding protein which activates adenylate cyclase. [provided by RefSeq, Aug 2011].
Gencode Transcript: ENST00000377633.7
Gencode Gene: ENSG00000106018.14
Transcript (Including UTRs)
   Position: hg38 chr7:159,030,455-159,097,204 Size: 66,750 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg38 chr7:159,030,616-159,097,143 Size: 66,528 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:159,030,455-159,097,204)mRNA (may differ from genome)Protein (422 aa)
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OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: VIPR2_HUMAN
DESCRIPTION: RecName: Full=Vasoactive intestinal polypeptide receptor 2; Short=VIP-R-2; AltName: Full=Helodermin-preferring VIP receptor; AltName: Full=Pituitary adenylate cyclase-activating polypeptide type III receptor; Short=PACAP type III receptor; Short=PACAP-R-3; Short=PACAP-R3; AltName: Full=VPAC2; Flags: Precursor;
FUNCTION: This is a receptor for VIP as well as PACAP-38 and -27, the activity of this receptor is mediated by G proteins which activate adenylyl cyclase. Can be coupled to phospholipase C.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in CD4+ T-cells, but not in CD8+ T- cells. Expressed in the T-cell lines Jurkat, Peer, MOLT-4, HSB, YT and SUP-T1, but not in the T-cell lines HARRIS and HuT 78.
SIMILARITY: Belongs to the G-protein coupled receptor 2 family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: VIPR2
Diseases sorted by gene-association score: schizophrenia 16* (500), holoprosencephaly 3 (16)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.06 RPKM in Cervix - Endocervix
Total median expression: 129.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -15.4061-0.252 Picture PostScript Text
3' UTR -63.70161-0.396 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017981 - GPCR_2-like
IPR001879 - GPCR_2_extracellular_dom
IPR000832 - GPCR_2_secretin-like
IPR017983 - GPCR_2_secretin-like_CS
IPR001571 - GPCR_2_VIP_rcpt
IPR002284 - GPCR_2_VIP_rcpt_2

Pfam Domains:
PF00002 - 7 transmembrane receptor (Secretin family)
PF02793 - Hormone receptor domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2X57 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P41587
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
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Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004888 transmembrane signaling receptor activity
GO:0004930 G-protein coupled receptor activity
GO:0004999 vasoactive intestinal polypeptide receptor activity

Biological Process:
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007190 activation of adenylate cyclase activity
GO:0007267 cell-cell signaling
GO:0048662 negative regulation of smooth muscle cell proliferation

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  X95097 - Homo sapiens mRNA for VIP receptor 2.
U18810 - Human PACAP type-3/VIP type-2 receptor mRNA, complete cds.
BC010569 - Homo sapiens vasoactive intestinal peptide receptor 2, mRNA (cDNA clone MGC:17082 IMAGE:4178593), complete cds.
L36566 - Human helodermin-preferring VIP receptor (VIP2/PACAP receptor) mRNA, complete cds.
AK308955 - Homo sapiens cDNA, FLJ98996.
BT007118 - Homo sapiens vasoactive intestinal peptide receptor 2 mRNA, complete cds.
DQ890571 - Synthetic construct clone IMAGE:100003201; FLH164040.01X; RZPDo839C01162D vasoactive intestinal peptide receptor 2 (VIPR2) gene, encodes complete protein.
DQ893732 - Synthetic construct Homo sapiens clone IMAGE:100008192; FLH164036.01L; RZPDo839C01161D vasoactive intestinal peptide receptor 2 (VIPR2) gene, encodes complete protein.
KJ534960 - Homo sapiens clone VIPR2_iso-A_adult-A02 vasoactive intestinal peptide receptor 2 isoform A (VIPR2) mRNA, partial cds, alternatively spliced.
KJ534961 - Homo sapiens clone VIPR2_iso-B_fetal-F01 vasoactive intestinal peptide receptor 2 isoform B (VIPR2) mRNA, partial cds, alternatively spliced.
KJ534970 - Homo sapiens clone VIPR2_iso-C_fetal-F14 vasoactive intestinal peptide receptor 2 isoform C (VIPR2) mRNA, partial cds, alternatively spliced.
KJ892379 - Synthetic construct Homo sapiens clone ccsbBroadEn_01773 VIPR2 gene, encodes complete protein.
AK310386 - Homo sapiens cDNA, FLJ17428.
AK131406 - Homo sapiens cDNA FLJ16511 fis, clone HEART2009680, highly similar to Vasoactive intestinal polypeptide receptor 2 precursor.
JD417230 - Sequence 398254 from Patent EP1572962.
JD172943 - Sequence 153967 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04080 - Neuroactive ligand-receptor interaction

BioCarta from NCI Cancer Genome Anatomy Project
h_vipPathway - Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells

Reactome (by CSHL, EBI, and GO)

Protein P41587 (Reactome details) participates in the following event(s):

R-HSA-420233 VIP receptors bind VIP
R-HSA-744886 The Ligand:GPCR:Gs complex dissociates
R-HSA-744887 Liganded Gs-activating GPCRs bind inactive heterotrimeric Gs
R-HSA-379044 Liganded Gs-activating GPCR acts as a GEF for Gs
R-HSA-420092 Glucagon-type ligand receptors
R-HSA-418555 G alpha (s) signalling events
R-HSA-373080 Class B/2 (Secretin family receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000377633.1, ENST00000377633.2, ENST00000377633.3, ENST00000377633.4, ENST00000377633.5, ENST00000377633.6, NM_001308259, P41587, Q13053, Q15870, Q53Y09, Q9UCW0, uc064jts.1, VIP2R, VIPR2_HUMAN
UCSC ID: ENST00000377633.7
RefSeq Accession: NM_001308259
Protein: P41587 (aka VIPR2_HUMAN or VIPS_HUMAN)
CCDS: CCDS78295.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.