Human Gene DQ599922 (uc003jzt.2)

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Human Gene DQ599922 (uc003jzt.2)

Description: Uncharacterized protein ENSP00000382612 (Fragment).
Transcript (Including UTRs)
Position: hg18 chr5:69,861,022-69,862,215 Size: 1,194 Total Exon Count: 1 Strand: +
Coding Region
Position: hg18 chr5:69,861,068-69,862,141 Size: 1,074 Coding Exon Count: 1

Page Index	Sequence and Links	Primers	Microarray Expression	RNA Structure	Other Species
mRNA Descriptions	Other Names	Model Information	Methods

Data last updated at UCSC: 2009-03-03

Sequence and Links to Tools and Databases

Genomic Sequence (chr5:69,861,022-69,862,215)			mRNA (may differ from genome)		Protein (357 aa)
Gene Sorter	Genome Browser	Other Species FASTA	Table Schema	AlphaFold	ExonPrimer
GeneCards	MGI	PubMed	UniProtKB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Microarray Expression Data

mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-7.50	46	-0.163	Picture	PostScript	Text
3' UTR	-9.40	74	-0.127	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	AK097411 - Homo sapiens cDNA FLJ40092 fis, clone TESTI2003756. AK311627 - Homo sapiens cDNA, FLJ18669. AK296222 - Homo sapiens cDNA FLJ54498 complete cds, weakly similar to Mucin-like protein 1 precursor. Z70704 - H.sapiens mRNA (fetal brain cDNA c5_1). BC111482 - Homo sapiens cDNA clone IMAGE:5743861, with apparent retained intron. BC131592 - Homo sapiens POM121 membrane glycoprotein (rat) pseudogene, mRNA (cDNA clone IMAGE:40113777), containing frame-shift errors. DQ574682 - Homo sapiens piRNA piR-42794, complete sequence. DQ593210 - Homo sapiens piRNA piR-33322, complete sequence. DQ596042 - Homo sapiens piRNA piR-34108, complete sequence. DQ575504 - Homo sapiens piRNA piR-43616, complete sequence.

Other Names for This Gene


	Alternate Gene Symbols: A8MTF6, A8MTF6_HUMAN, uc003jzt.1 UCSC ID: uc003jzt.2 Representative RNA: DQ599922

Gene Model Information

category:	coding	nonsense-mediated-decay:	no	RNA accession:	DQ599922.1
exon count:	1	CDS single in 3' UTR:	no	RNA size:	26
ORF size:	1074	CDS single in intron:	no	Alignment % ID:	100.00
txCdsPredict score:	1274.00	frame shift in genome:	no	% Coverage:	100.00
has start codon:	yes	stop codon in genome:	no	# of Alignments:	27
has end codon:	yes	retained intron:	no	# AT/AC introns	0
selenocysteine:	no	end bleed into intron:	0	# strange splices:	0

Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.