Human Gene C10orf82 (uc001lcr.1)
  Description: hypothetical protein LOC143379
Transcript (Including UTRs)
   Position: hg18 chr10:118,413,197-118,419,471 Size: 6,275 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg18 chr10:118,413,671-118,417,813 Size: 4,143 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2009-03-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:118,413,197-118,419,471)mRNA (may differ from genome)Protein (154 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDMGIPubMed
TreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CJ082_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C10orf82;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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Affymetrix All Exon Microarrays

           
Ratios

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.6055-0.320 Picture PostScript Text
3' UTR -157.71474-0.333 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8WW14
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI     
Protein Sequence     
Alignment     

-  Descriptions from all associated GenBank mRNAs
  BC021737 - Homo sapiens chromosome 10 open reading frame 82, mRNA (cDNA clone MGC:33547 IMAGE:4821913), complete cds.
AK097587 - Homo sapiens cDNA FLJ40268 fis, clone TESTI2026537.
BX537582 - Homo sapiens mRNA; cDNA DKFZp686O02198 (from clone DKFZp686O02198).
HQ448321 - Synthetic construct Homo sapiens clone IMAGE:100071739; CCSB001761_03 chromosome 10 open reading frame 82 (C10orf82) gene, encodes complete protein.
CU692402 - Synthetic construct Homo sapiens gateway clone IMAGE:100020110 5' read C10orf82 mRNA.
JD468908 - Sequence 449932 from Patent EP1572962.
JD375966 - Sequence 356990 from Patent EP1572962.
KJ895569 - Synthetic construct Homo sapiens clone ccsbBroadEn_04963 C10orf82 gene, encodes complete protein.
JD250754 - Sequence 231778 from Patent EP1572962.
JD162505 - Sequence 143529 from Patent EP1572962.
JD150188 - Sequence 131212 from Patent EP1572962.
JD290863 - Sequence 271887 from Patent EP1572962.
JD167128 - Sequence 148152 from Patent EP1572962.
JD141835 - Sequence 122859 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CJ082_HUMAN, NM_144661, NP_653262, Q8WW14
UCSC ID: uc001lcr.1
RefSeq Accession: NM_144661
Protein: Q8WW14 (aka CJ082_HUMAN)
CCDS: CCDS7596.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_144661.2
exon count: 5CDS single in 3' UTR: no RNA size: 1009
ORF size: 465CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1129.00frame shift in genome: no % Coverage: 98.51
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.