Human Gene BC035647 (uc003noi.2)
  Description: Homo sapiens cDNA FLJ35602 fis, clone SPLEN2009088, highly similar to HLA CLASS I HISTOCOMPATIBILITY ANTIGEN.
Transcript (Including UTRs)
   Position: hg18 chr6:30,002,085-30,005,481 Size: 3,397 Total Exon Count: 5 Strand: +


Page IndexSequence and LinksPrimersMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2009-03-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:30,002,085-30,005,481)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
H-INVPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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Affymetrix All Exon Microarrays

           
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK092921 - Homo sapiens cDNA FLJ35602 fis, clone SPLEN2009088, highly similar to HLA CLASS I HISTOCOMPATIBILITY ANTIGEN.
AX747809 - Sequence 1334 from Patent EP1308459.
BC035647 - Homo sapiens, clone IMAGE:5575764, mRNA.
DQ600446 - Homo sapiens piRNA piR-38512, complete sequence.
JD121693 - Sequence 102717 from Patent EP1572962.
MA869136 - JP 2018536436-A/972: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
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MA869151 - JP 2018536436-A/987: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
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MA870178 - JP 2018536436-A/2014: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
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LY592266 - KR 1020180133840-A/1690: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591563 - KR 1020180133840-A/987: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591604 - KR 1020180133840-A/1028: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592590 - KR 1020180133840-A/2014: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591665 - KR 1020180133840-A/1089: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591666 - KR 1020180133840-A/1090: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592151 - KR 1020180133840-A/1575: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591683 - KR 1020180133840-A/1107: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591684 - KR 1020180133840-A/1108: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
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LY592460 - KR 1020180133840-A/1884: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591730 - KR 1020180133840-A/1154: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592459 - KR 1020180133840-A/1883: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591746 - KR 1020180133840-A/1170: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591747 - KR 1020180133840-A/1171: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592445 - KR 1020180133840-A/1869: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591748 - KR 1020180133840-A/1172: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592444 - KR 1020180133840-A/1868: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592085 - KR 1020180133840-A/1509: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592084 - KR 1020180133840-A/1508: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592443 - KR 1020180133840-A/1867: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592083 - KR 1020180133840-A/1507: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592442 - KR 1020180133840-A/1866: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591755 - KR 1020180133840-A/1179: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
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LY592076 - KR 1020180133840-A/1500: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591759 - KR 1020180133840-A/1183: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592075 - KR 1020180133840-A/1499: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591760 - KR 1020180133840-A/1184: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592074 - KR 1020180133840-A/1498: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592073 - KR 1020180133840-A/1497: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY592072 - KR 1020180133840-A/1496: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591862 - KR 1020180133840-A/1286: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591863 - KR 1020180133840-A/1287: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591864 - KR 1020180133840-A/1288: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.
LY591877 - KR 1020180133840-A/1301: COMPOSITIONS AND METHODS FOR IMMUNOONCOLOGY.

-  Other Names for This Gene
  Alternate Gene Symbols: uc003noi.1
UCSC ID: uc003noi.2
Representative RNA: BC035647

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC035647.1
exon count: 5CDS single in 3' UTR: no RNA size: 1689
ORF size: 0CDS single in intron: no Alignment % ID: 99.94
txCdsPredict score: 143.00frame shift in genome: no % Coverage: 97.99
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.