Human Gene OK/SW-cl.16 (uc004cou.2)
  Description: Homo sapiens mRNA expressed only in placental villi, clone SMAP42.
Transcript (Including UTRs)
   Position: hg18 chrM:7,672-9,206 Size: 1,535 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2009-03-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrM:7,672-9,206)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaEnsembl
ExonPrimerH-INVPubMedTreefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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Affymetrix All Exon Microarrays

           
Ratios

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  HW291269 - JP 2013520965-A/31: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291270 - JP 2013520965-A/32: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291261 - JP 2013520965-A/23: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291262 - JP 2013520965-A/24: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291263 - JP 2013520965-A/25: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291276 - JP 2013520965-A/38: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291259 - JP 2013520965-A/21: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291271 - JP 2013520965-A/33: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291272 - JP 2013520965-A/34: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
HW291264 - JP 2013520965-A/26: UV ASSOCIATED mtDNA FUSION TRANSCRIPTS AND METHODS AND USES THEREOF.
X15759 - H.sapiens mitochondrial mRNA for cytochrome c oxidase subunit II.
BC013387 - Homo sapiens, Similar to cytochrome c oxidase II, clone IMAGE:4050172, mRNA.
BC013388 - Homo sapiens, Similar to cytochrome c oxidase II, clone IMAGE:3681696, mRNA.
BC013390 - Homo sapiens, Similar to cytochrome c oxidase II, clone IMAGE:4041403, mRNA.
BC013391 - Homo sapiens, Similar to cytochrome c oxidase II, clone IMAGE:4041785, mRNA.
AB019563 - Homo sapiens mRNA expressed only in placental villi, clone SMAP42.
AY211920 - Homo sapiens sarcoma antigen NY-SAR-71 mRNA, partial cds.
X55654 - Homo sapiens mitochondrial coxII mRNA for cytochrome C oxidase II subunit.
AK026536 - Homo sapiens cDNA: FLJ22883 fis, clone KAT03594, highly similar to MTHSCOXII Homo sapiens mitochondrial coxII mRNA for cytochrome C oxidase II subunit.
Y17175 - Homo sapiens mRNA from HIV-associated non-Hodgkin's lymphoma (clone hl2-274).
X64709 - H.sapiens deleted mitochondrial mRNA sequence (transcribed in human colon adenocarcinoma cells).
AK026530 - Homo sapiens cDNA fis, A-KAT03057, highly similar to Homo sapiens mitochondrion, ATP synthase 6.
AF368271 - Homo sapiens ATP synthase 6 mRNA, complete cds; mitochondrial gene for mitochondrial product.
AK057071 - Homo sapiens cDNA FLJ32509 fis, clone SMINT1000054.
Y17179 - Homo sapiens mRNA from HIV-associated non-Hodgkin's lymphoma (clone hl2-494).
Y17171 - Homo sapiens mRNA from HIV-associated non-Hodgkin's lymphoma (clone hl2-129).
AK094841 - Homo sapiens cDNA FLJ37522 fis, clone BRCAN2006174, weakly similar to ATP SYNTHASE A CHAIN (EC 3.6.1.34).
BC036586 - Homo sapiens cDNA clone IMAGE:4798970, **** WARNING: chimeric clone ****.
AB064665 - Homo sapiens mRNA for OK/SW-CL.16, complete cds.
HV963896 - JP 2012521745-A/40: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963894 - JP 2012521745-A/38: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963885 - JP 2012521745-A/29: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963886 - JP 2012521745-A/30: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963877 - JP 2012521745-A/21: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963878 - JP 2012521745-A/22: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963879 - JP 2012521745-A/23: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963891 - JP 2012521745-A/35: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963875 - JP 2012521745-A/19: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963887 - JP 2012521745-A/31: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963892 - JP 2012521745-A/36: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
HV963880 - JP 2012521745-A/24: Aberrant Mitochondrial DNA, Associated Fusion Transcripts and Translation Products and Hybridization Probes Therefor.
JA760640 - Sequence 59 from Patent EP2411522.
JA760637 - Sequence 56 from Patent EP2411522.
JA760610 - Sequence 29 from Patent EP2411522.
JA760611 - Sequence 30 from Patent EP2411522.
JA760602 - Sequence 21 from Patent EP2411522.
JA760603 - Sequence 22 from Patent EP2411522.
JA760604 - Sequence 23 from Patent EP2411522.
JA760616 - Sequence 35 from Patent EP2411522.
JA760600 - Sequence 19 from Patent EP2411522.
JA760612 - Sequence 31 from Patent EP2411522.
JA760634 - Sequence 53 from Patent EP2411522.
JA760605 - Sequence 24 from Patent EP2411522.
JB242127 - Sequence 31 from Patent EP2542680.
JB242128 - Sequence 32 from Patent EP2542680.
JB242119 - Sequence 23 from Patent EP2542680.
JB242120 - Sequence 24 from Patent EP2542680.
JB242121 - Sequence 25 from Patent EP2542680.
JB242134 - Sequence 38 from Patent EP2542680.
JB242117 - Sequence 21 from Patent EP2542680.
JB242129 - Sequence 33 from Patent EP2542680.
JB242130 - Sequence 34 from Patent EP2542680.
JB242122 - Sequence 26 from Patent EP2542680.
HV444972 - JP 2011515091-A/28: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
HV444973 - JP 2011515091-A/29: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
JA040733 - Sequence 28 from Patent EP2274426.
JA040734 - Sequence 29 from Patent EP2274426.
HV444964 - JP 2011515091-A/20: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
HV444965 - JP 2011515091-A/21: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
HV444966 - JP 2011515091-A/22: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
JA040725 - Sequence 20 from Patent EP2274426.
JA040726 - Sequence 21 from Patent EP2274426.
JA040727 - Sequence 22 from Patent EP2274426.
BD353340 - Method for predicting functional sites of RNA from its sequence.
M37726 - Human mitochondrial Lys-tRNA-aaa.
HV444977 - JP 2011515091-A/33: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
JA040738 - Sequence 33 from Patent EP2274426.
HV444962 - JP 2011515091-A/18: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
JA040723 - Sequence 18 from Patent EP2274426.
HV444974 - JP 2011515091-A/30: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
HV444978 - JP 2011515091-A/34: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
JA040735 - Sequence 30 from Patent EP2274426.
JA040755 - Sequence 50 from Patent EP2274426.
HV444967 - JP 2011515091-A/23: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
JA040728 - Sequence 23 from Patent EP2274426.
DL492475 - Novel nucleic acids.
JD410911 - Sequence 391935 from Patent EP1572962.
JD398518 - Sequence 379542 from Patent EP1572962.
JD285308 - Sequence 266332 from Patent EP1572962.
JD113307 - Sequence 94331 from Patent EP1572962.
JD130444 - Sequence 111468 from Patent EP1572962.
JD097059 - Sequence 78083 from Patent EP1572962.
LY485908 - KR 1020170004033-A/28: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485909 - KR 1020170004033-A/29: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485900 - KR 1020170004033-A/20: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485901 - KR 1020170004033-A/21: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485902 - KR 1020170004033-A/22: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485913 - KR 1020170004033-A/33: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485898 - KR 1020170004033-A/18: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485910 - KR 1020170004033-A/30: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485914 - KR 1020170004033-A/50: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LY485903 - KR 1020170004033-A/23: ABERRANT MITOCHONDRIAL DNA, ASSOCIATED FUSION TRANSCRIPTS AND HYBRIDIZATION PROBES THEREFOR.
LP895143 - Sequence 7 from Patent EP3253886.
LP790441 - Sequence 59 from Patent EP3272871.
LP790438 - Sequence 56 from Patent EP3272871.
LP790411 - Sequence 29 from Patent EP3272871.
LP790412 - Sequence 30 from Patent EP3272871.
LP803417 - Sequence 31 from Patent EP3305902.
LP803418 - Sequence 32 from Patent EP3305902.
LP790403 - Sequence 21 from Patent EP3272871.
LP790404 - Sequence 22 from Patent EP3272871.
LP790405 - Sequence 23 from Patent EP3272871.
LP803409 - Sequence 23 from Patent EP3305902.
LP803410 - Sequence 24 from Patent EP3305902.
LP803411 - Sequence 25 from Patent EP3305902.
LP790417 - Sequence 35 from Patent EP3272871.
LP803424 - Sequence 38 from Patent EP3305902.
LP790401 - Sequence 19 from Patent EP3272871.
LP803407 - Sequence 21 from Patent EP3305902.
LP790413 - Sequence 31 from Patent EP3272871.
LP790435 - Sequence 53 from Patent EP3272871.
LP803419 - Sequence 33 from Patent EP3305902.
LP803420 - Sequence 34 from Patent EP3305902.
LP790406 - Sequence 24 from Patent EP3272871.
LP803412 - Sequence 26 from Patent EP3305902.

-  Other Names for This Gene
  Alternate Gene Symbols: AB064665, uc004cou.1
UCSC ID: uc004cou.2
Representative RNA: AB064665

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AB064665.1
exon count: 1CDS single in 3' UTR: no RNA size: 1015
ORF size: 0CDS single in intron: no Alignment % ID: 99.68
txCdsPredict score: 311.00frame shift in genome: no % Coverage: 16.95
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.