Human Gene ARHGDIA (uc002kjk.1)
  Description: Homo sapiens Rho GDP dissociation inhibitor alpha (ARHGDIA) mRNA, complete cds.
Transcript (Including UTRs)
   Position: hg18 chr17_random:2,385,030-2,386,952 Size: 1,923 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksPrimersCTDMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2009-03-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17_random:2,385,030-2,386,952)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerH-INVHGNCPubMedTreefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
Ratios
      
      
      
     
    
     
Absolute
      
       
      
      
     
    
Ratios
      
       
      
      
     
    
Absolute
   
     
     
Ratios
   
     
     
Absolute

Affymetrix All Exon Microarrays

           
Ratios

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC007630 - Homo sapiens cDNA clone IMAGE:3507155.
BC016031 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone MGC:17389 IMAGE:3911525), complete cds.
BC008701 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone MGC:15464 IMAGE:2966760), complete cds.
BC009759 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone MGC:11215 IMAGE:3935956), complete cds.
BC013846 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone IMAGE:4387620).
BC016185 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone MGC:23672 IMAGE:4867857), complete cds.
BC024258 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone MGC:15507 IMAGE:3027721), complete cds.
BC027730 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone MGC:23472 IMAGE:4764249), complete cds.
BC028333 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone IMAGE:4473555).
BC075827 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha, mRNA (cDNA clone MGC:88563 IMAGE:6074977), complete cds.
X69550 - H.sapiens mRNA for rho GDP-dissociation Inhibitor 1.
D13989 - Homo sapiens rho GDI mRNA, complete cds.
AF498926 - Homo sapiens Rho GDP dissociation inhibitor alpha (ARHGDIA) mRNA, complete cds.
M97579 - Human GDP dissociation inhibitor mRNA, complete cds.
CU677553 - Synthetic construct Homo sapiens gateway clone IMAGE:100018562 5' read ARHGDIA mRNA.
BT006884 - Homo sapiens Rho GDP dissociation inhibitor (GDI) alpha mRNA, complete cds.
DQ891117 - Synthetic construct clone IMAGE:100003747; FLH169462.01X; RZPDo839C0896D Rho GDP dissociation inhibitor (GDI) alpha (ARHGDIA) gene, encodes complete protein.
DQ894296 - Synthetic construct Homo sapiens clone IMAGE:100008756; FLH169458.01L; RZPDo839C0895D Rho GDP dissociation inhibitor (GDI) alpha (ARHGDIA) gene, encodes complete protein.
AB528406 - Synthetic construct DNA, clone: pF1KB6907, Homo sapiens ARHGDIA gene for Rho GDP dissociation inhibitor (GDI) alpha, without stop codon, in Flexi system.
CR456777 - Homo sapiens full open reading frame cDNA clone RZPDo834F064D for gene ARHGDIA, Rho GDP dissociation inhibitor (GDI) alpha; complete cds, incl. stopcodon.
EU794615 - Homo sapiens epididymis secretory sperm binding protein Li 47e (HEL-S-47e) mRNA, complete cds.
JD477689 - Sequence 458713 from Patent EP1572962.
JD478287 - Sequence 459311 from Patent EP1572962.
JD536366 - Sequence 517390 from Patent EP1572962.
JD413553 - Sequence 394577 from Patent EP1572962.
JD401384 - Sequence 382408 from Patent EP1572962.
JD401383 - Sequence 382407 from Patent EP1572962.
JD404630 - Sequence 385654 from Patent EP1572962.
JD387605 - Sequence 368629 from Patent EP1572962.
JD387474 - Sequence 368498 from Patent EP1572962.
JD519737 - Sequence 500761 from Patent EP1572962.
JD547285 - Sequence 528309 from Patent EP1572962.
JD406489 - Sequence 387513 from Patent EP1572962.
JD418249 - Sequence 399273 from Patent EP1572962.
JD396543 - Sequence 377567 from Patent EP1572962.
JD491413 - Sequence 472437 from Patent EP1572962.
JD383378 - Sequence 364402 from Patent EP1572962.
JD544645 - Sequence 525669 from Patent EP1572962.
JD485569 - Sequence 466593 from Patent EP1572962.
JD384829 - Sequence 365853 from Patent EP1572962.
JD382610 - Sequence 363634 from Patent EP1572962.
JD385731 - Sequence 366755 from Patent EP1572962.
JD233733 - Sequence 214757 from Patent EP1572962.
JD195179 - Sequence 176203 from Patent EP1572962.
JD194216 - Sequence 175240 from Patent EP1572962.
JD021681 - Sequence 2705 from Patent EP1572962.
JD193863 - Sequence 174887 from Patent EP1572962.
JD029998 - Sequence 11022 from Patent EP1572962.
JD223718 - Sequence 204742 from Patent EP1572962.
JD219003 - Sequence 200027 from Patent EP1572962.
JD253468 - Sequence 234492 from Patent EP1572962.
JD273878 - Sequence 254902 from Patent EP1572962.
JD179878 - Sequence 160902 from Patent EP1572962.
JD022059 - Sequence 3083 from Patent EP1572962.
JD036265 - Sequence 17289 from Patent EP1572962.
JD036264 - Sequence 17288 from Patent EP1572962.
JD025707 - Sequence 6731 from Patent EP1572962.
JD136606 - Sequence 117630 from Patent EP1572962.
JD055874 - Sequence 36898 from Patent EP1572962.
JD253149 - Sequence 234173 from Patent EP1572962.
JD104574 - Sequence 85598 from Patent EP1572962.
JD076498 - Sequence 57522 from Patent EP1572962.
KU177916 - Homo sapiens Rho GDP dissociation inhibitor alpha isoform 1 (ARHGDIA) mRNA, partial cds.
KU177917 - Homo sapiens Rho GDP dissociation inhibitor alpha isoform 2 (ARHGDIA) mRNA, partial cds, alternatively spliced.

-  Other Names for This Gene
  Alternate Gene Symbols: BC028333
UCSC ID: uc002kjk.1
Representative RNA: BC028333

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC028333.1
exon count: 4CDS single in 3' UTR: no RNA size: 1785
ORF size: 0CDS single in intron: no Alignment % ID: 99.88
txCdsPredict score: 560.00frame shift in genome: no % Coverage: 84.48
has start codon: no stop codon in genome: no # of Alignments: 2
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.