Human Gene PPP1R11 (uc003rtr.1)
  Description: protein phosphatase 1, regulatory (inhibitor)
RefSeq Summary (NM_021959): This gene encodes a specific inhibitor of protein phosphatase-1 (PP1) with a differential sensitivity toward the metal-independent and metal-dependent forms of PP1. The gene is located within the major histocompatibility complex class I region on chromosome 6. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg18 chr6_qbl_hap2:1,281,858-1,285,034 Size: 3,177 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg18 chr6_qbl_hap2:1,282,114-1,284,009 Size: 1,896 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2009-03-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6_qbl_hap2:1,281,858-1,285,034)mRNA (may differ from genome)Protein (126 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
HGNCHPRDMGIOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PP1RB_HUMAN
DESCRIPTION: RecName: Full=Protein phosphatase 1 regulatory subunit 11; AltName: Full=Hemochromatosis candidate gene V protein; Short=HCG V; AltName: Full=Protein phosphatase inhibitor 3;
FUNCTION: Inhibitor of protein phosphatase 1.
TISSUE SPECIFICITY: Widely expressed.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -100.57256-0.393 Picture PostScript Text
3' UTR -304.741025-0.297 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011107 - PPI_Ypi1

Pfam Domains:
PF07491 - Protein phosphatase inhibitor

ModBase Predicted Comparative 3D Structure on O60927
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsemblFlyBaseWormBaseSGD
  Protein SequenceProtein SequenceProtein SequenceProtein Sequence
  AlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004864 protein phosphatase inhibitor activity
GO:0004865 protein serine/threonine phosphatase inhibitor activity
GO:0005515 protein binding
GO:0008157 protein phosphatase 1 binding
GO:0016740 transferase activity
GO:0061630 ubiquitin protein ligase activity

Biological Process:
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0016567 protein ubiquitination
GO:0032515 negative regulation of phosphoprotein phosphatase activity
GO:0050710 negative regulation of cytokine secretion
GO:0050830 defense response to Gram-positive bacterium

Cellular Component:
GO:0000164 protein phosphatase type 1 complex
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK310593 - Homo sapiens cDNA, FLJ17635.
AK313175 - Homo sapiens cDNA, FLJ93673, Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit11 (PPP1R11), transcript variant 1, mRNA.
X81003 - Homo sapiens HCG V mRNA.
BC102010 - Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 11, mRNA (cDNA clone MGC:125743 IMAGE:40029469), complete cds.
BC102011 - Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 11, mRNA (cDNA clone MGC:125742 IMAGE:40029466), complete cds.
BC104750 - Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 11, mRNA (cDNA clone MGC:125741 IMAGE:40029465), complete cds.
BC003144 - Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 11, mRNA (cDNA clone MGC:3857 IMAGE:2823116), complete cds.
AF070599 - Homo sapiens clone 24451 mRNA sequence.
JD402460 - Sequence 383484 from Patent EP1572962.
JD439580 - Sequence 420604 from Patent EP1572962.
JD390506 - Sequence 371530 from Patent EP1572962.
JD525793 - Sequence 506817 from Patent EP1572962.
JD348943 - Sequence 329967 from Patent EP1572962.
JD468540 - Sequence 449564 from Patent EP1572962.
JD516742 - Sequence 497766 from Patent EP1572962.
JD415292 - Sequence 396316 from Patent EP1572962.
JD365895 - Sequence 346919 from Patent EP1572962.
JD507445 - Sequence 488469 from Patent EP1572962.
JD488239 - Sequence 469263 from Patent EP1572962.
JD540128 - Sequence 521152 from Patent EP1572962.
JD555549 - Sequence 536573 from Patent EP1572962.
JD486433 - Sequence 467457 from Patent EP1572962.
JD539605 - Sequence 520629 from Patent EP1572962.
JD399042 - Sequence 380066 from Patent EP1572962.
JD385027 - Sequence 366051 from Patent EP1572962.
JD523917 - Sequence 504941 from Patent EP1572962.
JD524542 - Sequence 505566 from Patent EP1572962.
JD547484 - Sequence 528508 from Patent EP1572962.
JD432321 - Sequence 413345 from Patent EP1572962.
JD443369 - Sequence 424393 from Patent EP1572962.
JD544875 - Sequence 525899 from Patent EP1572962.
JD394824 - Sequence 375848 from Patent EP1572962.
JD385565 - Sequence 366589 from Patent EP1572962.
JD138590 - Sequence 119614 from Patent EP1572962.
JD148080 - Sequence 129104 from Patent EP1572962.
JD086006 - Sequence 67030 from Patent EP1572962.
JD304094 - Sequence 285118 from Patent EP1572962.
JD267829 - Sequence 248853 from Patent EP1572962.
JD042659 - Sequence 23683 from Patent EP1572962.
JD264420 - Sequence 245444 from Patent EP1572962.
JD314224 - Sequence 295248 from Patent EP1572962.
JD164623 - Sequence 145647 from Patent EP1572962.
JD197540 - Sequence 178564 from Patent EP1572962.
JD055447 - Sequence 36471 from Patent EP1572962.
JD152695 - Sequence 133719 from Patent EP1572962.
JD183181 - Sequence 164205 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: HCGV, NM_021959, NP_068778, O60927, PP1RB_HUMAN, TCTE5
UCSC ID: uc003rtr.1
RefSeq Accession: NM_021959
Protein: O60927 (aka PP1RB_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_021959.2
exon count: 3CDS single in 3' UTR: no RNA size: 1664
ORF size: 381CDS single in intron: no Alignment % ID: 99.70
txCdsPredict score: 869.00frame shift in genome: no % Coverage: 99.88
has start codon: yes stop codon in genome: no # of Alignments: 3
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.