Human Gene KIAA2022 (uc004eby.1)
  Description: hypothetical protein LOC340533
RefSeq Summary (NM_001008537): An inversion on the X chromosome which disrupts this gene and a G-protein coupled purinergic receptor gene located in the pseudoautosomal region of the X chromosome has been linked to X linked cognitive disability.[provided by RefSeq, Mar 2009]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Transcript (Including UTRs)
   Position: hg18 chrX:73,870,137-74,061,709 Size: 191,573 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg18 chrX:73,875,965-73,882,210 Size: 6,246 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2009-03-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:73,870,137-74,061,709)mRNA (may differ from genome)Protein (1516 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDMGIOMIM
PubMedTreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: K2022_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein KIAA2022;
TISSUE SPECIFICITY: Highly expressed in fetal and adult brain, predominantly in the cerebral cortex and the cerebellum. Also expressed in other tissues but to a lesser extent.
DISEASE: Note=A chromosomal aberration involving KIAA2022 is found in 2 patients with severe mental retardation (MR). Pericentric inversion inv(X)(p22.3;q13.2). The Xq13 breakpoint lies within a predicted intron of KIAA2022 gene. KIAA2022 protein is no longer expressed in these patients lymphocytes.
SEQUENCE CAUTION: Sequence=BAC23118.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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Affymetrix All Exon Microarrays

           
Ratios

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -147.20314-0.469 Picture PostScript Text
3' UTR -1578.795828-0.271 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q5QGS0
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI Ensembl   
Protein Sequence Protein Sequence   
Alignment Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0001953 negative regulation of cell-matrix adhesion
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007275 multicellular organism development
GO:0007399 nervous system development
GO:0033629 negative regulation of cell adhesion mediated by integrin
GO:0042276 error-prone translesion synthesis
GO:2000048 negative regulation of cell-cell adhesion mediated by cadherin
GO:2001223 negative regulation of neuron migration

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0016035 zeta DNA polymerase complex


-  Descriptions from all associated GenBank mRNAs
  BC152557 - Homo sapiens KIAA2022, mRNA (cDNA clone MGC:166925 IMAGE:8860127), complete cds.
AY563507 - Homo sapiens KIAA2022 mRNA, complete cds.
AB095942 - Homo sapiens mRNA for KIAA2022 protein.
AK307471 - Homo sapiens cDNA, FLJ97419.
BC038798 - Homo sapiens KIAA2022 protein, mRNA (cDNA clone IMAGE:5240524), partial cds.
AK128651 - Homo sapiens cDNA FLJ46810 fis, clone TRACH3036004.
BC167807 - Synthetic construct Homo sapiens clone IMAGE:100068197, MGC:195814 KIAA2022 (KIAA2022) mRNA, encodes complete protein.
AB587319 - Synthetic construct DNA, clone: pF1KA2022, Homo sapiens KIAA2022 gene for KIAA2022, without stop codon, in Flexi system.
JD429134 - Sequence 410158 from Patent EP1572962.
JD376409 - Sequence 357433 from Patent EP1572962.
JD359698 - Sequence 340722 from Patent EP1572962.
JD424593 - Sequence 405617 from Patent EP1572962.
JD550609 - Sequence 531633 from Patent EP1572962.
JD516031 - Sequence 497055 from Patent EP1572962.
JD509065 - Sequence 490089 from Patent EP1572962.
JD429140 - Sequence 410164 from Patent EP1572962.
JD378802 - Sequence 359826 from Patent EP1572962.
JD349297 - Sequence 330321 from Patent EP1572962.
JD358611 - Sequence 339635 from Patent EP1572962.
JD566738 - Sequence 547762 from Patent EP1572962.
JD380105 - Sequence 361129 from Patent EP1572962.
JD509069 - Sequence 490093 from Patent EP1572962.
JD438663 - Sequence 419687 from Patent EP1572962.
JD552263 - Sequence 533287 from Patent EP1572962.
JD491062 - Sequence 472086 from Patent EP1572962.
JD464307 - Sequence 445331 from Patent EP1572962.
JD501678 - Sequence 482702 from Patent EP1572962.
JD553549 - Sequence 534573 from Patent EP1572962.
JD398141 - Sequence 379165 from Patent EP1572962.
JD556629 - Sequence 537653 from Patent EP1572962.
JD465164 - Sequence 446188 from Patent EP1572962.
JD477315 - Sequence 458339 from Patent EP1572962.
JD369092 - Sequence 350116 from Patent EP1572962.
JD561135 - Sequence 542159 from Patent EP1572962.
JD532378 - Sequence 513402 from Patent EP1572962.
JD354638 - Sequence 335662 from Patent EP1572962.
JD502219 - Sequence 483243 from Patent EP1572962.
JD410391 - Sequence 391415 from Patent EP1572962.
JD353926 - Sequence 334950 from Patent EP1572962.
JD520157 - Sequence 501181 from Patent EP1572962.
JD557236 - Sequence 538260 from Patent EP1572962.
JD305824 - Sequence 286848 from Patent EP1572962.
JD090328 - Sequence 71352 from Patent EP1572962.
JD304404 - Sequence 285428 from Patent EP1572962.
JD113790 - Sequence 94814 from Patent EP1572962.
JD039804 - Sequence 20828 from Patent EP1572962.
JD042101 - Sequence 23125 from Patent EP1572962.
JD065210 - Sequence 46234 from Patent EP1572962.
JD102442 - Sequence 83466 from Patent EP1572962.
JD272832 - Sequence 253856 from Patent EP1572962.
JD291984 - Sequence 273008 from Patent EP1572962.
JD239562 - Sequence 220586 from Patent EP1572962.
JD224122 - Sequence 205146 from Patent EP1572962.
JD242225 - Sequence 223249 from Patent EP1572962.
JD073391 - Sequence 54415 from Patent EP1572962.
JD329622 - Sequence 310646 from Patent EP1572962.
JD056285 - Sequence 37309 from Patent EP1572962.
JD245010 - Sequence 226034 from Patent EP1572962.
JD276560 - Sequence 257584 from Patent EP1572962.
JD287113 - Sequence 268137 from Patent EP1572962.
JD130900 - Sequence 111924 from Patent EP1572962.
JD109950 - Sequence 90974 from Patent EP1572962.
JD136738 - Sequence 117762 from Patent EP1572962.
JD262894 - Sequence 243918 from Patent EP1572962.
JD190517 - Sequence 171541 from Patent EP1572962.
JD302742 - Sequence 283766 from Patent EP1572962.
JD344527 - Sequence 325551 from Patent EP1572962.
LF382024 - JP 2014500723-A/189527: Polycomb-Associated Non-Coding RNAs.
LF382025 - JP 2014500723-A/189528: Polycomb-Associated Non-Coding RNAs.
LF382026 - JP 2014500723-A/189529: Polycomb-Associated Non-Coding RNAs.
LF382027 - JP 2014500723-A/189530: Polycomb-Associated Non-Coding RNAs.
LF382028 - JP 2014500723-A/189531: Polycomb-Associated Non-Coding RNAs.
LF382029 - JP 2014500723-A/189532: Polycomb-Associated Non-Coding RNAs.
LF382030 - JP 2014500723-A/189533: Polycomb-Associated Non-Coding RNAs.
LF382031 - JP 2014500723-A/189534: Polycomb-Associated Non-Coding RNAs.
LF382032 - JP 2014500723-A/189535: Polycomb-Associated Non-Coding RNAs.
LF382033 - JP 2014500723-A/189536: Polycomb-Associated Non-Coding RNAs.
LF382034 - JP 2014500723-A/189537: Polycomb-Associated Non-Coding RNAs.
LF382035 - JP 2014500723-A/189538: Polycomb-Associated Non-Coding RNAs.
LF382036 - JP 2014500723-A/189539: Polycomb-Associated Non-Coding RNAs.
LF382037 - JP 2014500723-A/189540: Polycomb-Associated Non-Coding RNAs.
LF382038 - JP 2014500723-A/189541: Polycomb-Associated Non-Coding RNAs.
MA617601 - JP 2018138019-A/189527: Polycomb-Associated Non-Coding RNAs.
MA617602 - JP 2018138019-A/189528: Polycomb-Associated Non-Coding RNAs.
MA617603 - JP 2018138019-A/189529: Polycomb-Associated Non-Coding RNAs.
MA617604 - JP 2018138019-A/189530: Polycomb-Associated Non-Coding RNAs.
MA617605 - JP 2018138019-A/189531: Polycomb-Associated Non-Coding RNAs.
MA617606 - JP 2018138019-A/189532: Polycomb-Associated Non-Coding RNAs.
MA617607 - JP 2018138019-A/189533: Polycomb-Associated Non-Coding RNAs.
MA617608 - JP 2018138019-A/189534: Polycomb-Associated Non-Coding RNAs.
MA617609 - JP 2018138019-A/189535: Polycomb-Associated Non-Coding RNAs.
MA617610 - JP 2018138019-A/189536: Polycomb-Associated Non-Coding RNAs.
MA617611 - JP 2018138019-A/189537: Polycomb-Associated Non-Coding RNAs.
MA617612 - JP 2018138019-A/189538: Polycomb-Associated Non-Coding RNAs.
MA617613 - JP 2018138019-A/189539: Polycomb-Associated Non-Coding RNAs.
MA617614 - JP 2018138019-A/189540: Polycomb-Associated Non-Coding RNAs.
MA617615 - JP 2018138019-A/189541: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: K2022_HUMAN, NM_001008537, NP_001008537, Q5JUX9, Q5QGS0, Q8IVE9
UCSC ID: uc004eby.1
RefSeq Accession: NM_001008537
Protein: Q5QGS0 (aka K2022_HUMAN)
CCDS: CCDS35337.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001008537.1
exon count: 4CDS single in 3' UTR: no RNA size: 10693
ORF size: 4551CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 9243.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.