Human Gene TP53INP1 (uc003yhg.1)
  Description: tumor protein p53 inducible nuclear protein 1
Transcript (Including UTRs)
   Position: hg18 chr8:96,007,377-96,030,767 Size: 23,391 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg18 chr8:96,011,883-96,022,345 Size: 10,463 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesModel InformationMethods
Data last updated at UCSC: 2009-03-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:96,007,377-96,030,767)mRNA (may differ from genome)Protein (240 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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H-INVHGNCHPRDMGIOMIMPubMed
ReactomeTreefamUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: T53I1_HUMAN
DESCRIPTION: RecName: Full=Tumor protein p53-inducible nuclear protein 1; AltName: Full=Stress-induced protein; AltName: Full=p53-dependent damage-inducible nuclear protein 1; Short=p53DINP1;
FUNCTION: Antiproliferative and proapoptotic protein involved in cell stress response which acts as a dual regulator of transcription and autophagy. Acts as a positive regulator of autophagy. In response to cellular stress or activation of autophagy, relocates to autophagosomes where it interacts with autophagosome-associated proteins GABARAP, GABARAPL1/L2, MAP1LC3A/B/C and regulates autophagy. Acts as an antioxidant and plays a major role in p53/TP53-driven oxidative stress response. Possesses both a p53/TP53-independent intracellular reactive oxygen species (ROS) regulatory function and a p53/TP53-dependent transcription regulatory function. Positively regulates p53/TP53 and p73/TP73 and stimulates their capacity to induce apoptosis and regulate cell cycle. In response to double-strand DNA breaks, promotes p53/TP53 phosphorylation on 'Ser-46' and subsequent apoptosis. Acts as a tumor suppressor by inducing cell death by an autophagy and caspase-dependent mechanism. Can reduce cell migration by regulating the expression of SPARC.
SUBUNIT: Interacts with p53/TP53 and HIPK2. Interacts with PRKCG, GABARAP, GABARAPL1, GABARAPL2, MAP1LC3A, MAP1LC3B AND MAP1LC3C.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus. Nucleus, PML body. Cytoplasmic vesicle, autophagosome. Note=Shuttles between the nucleus and the cytoplasm, depending on cellular stress conditions, and re-localizes to autophagosomes on autophagy activation.
TISSUE SPECIFICITY: Ubiquitously expressed.
INDUCTION: By adriamycin, gamma irradiation and H(2)O(2), in a p53/TP53-dependent way. At lower levels by UV irradiation. By TP73.
DOMAIN: The LC3 interacting region (LIR) motif mediates interaction with GABARAP, GABARAPL1, GABARAPL2, MAP1LC3A, MAP1LC3B and MAP1LC3C.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D002945 Cisplatin
  • D004997 Ethinyl Estradiol
  • C006780 bisphenol A
  • C012589 trichostatin A
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D015073 2-Acetylaminofluorene
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D000082 Acetaminophen
  • D016604 Aflatoxin B1
          more ... click here to view the complete list

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from U133A and GNF1H Chips

      
      
      
     
    
     
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Affymetrix All Exon Microarrays

           
Ratios

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -117.30360-0.326 Picture PostScript Text
3' UTR -1232.724506-0.274 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q96A56
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
MGIRGDEnsembl   
Protein Sequence Protein Sequence   
Alignment Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0016209 antioxidant activity

Biological Process:
GO:0000045 autophagosome assembly
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006914 autophagy
GO:0006915 apoptotic process
GO:0007050 cell cycle arrest
GO:0008285 negative regulation of cell proliferation
GO:0009408 response to heat
GO:0010506 regulation of autophagy
GO:0010508 positive regulation of autophagy
GO:0010628 positive regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0030336 negative regulation of cell migration
GO:0034644 cellular response to UV
GO:0042981 regulation of apoptotic process
GO:0043065 positive regulation of apoptotic process
GO:0045893 positive regulation of transcription, DNA-templated
GO:0048102 autophagic cell death
GO:0048147 negative regulation of fibroblast proliferation
GO:0071361 cellular response to ethanol
GO:0071447 cellular response to hydroperoxide
GO:0072703 cellular response to methyl methanesulfonate
GO:0098869 cellular oxidant detoxification
GO:1901796 regulation of signal transduction by p53 class mediator
GO:1904761 negative regulation of myofibroblast differentiation
GO:2001235 positive regulation of apoptotic signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005776 autophagosome
GO:0005829 cytosol
GO:0016605 PML body
GO:0031410 cytoplasmic vesicle


-  Descriptions from all associated GenBank mRNAs
  AK025792 - Homo sapiens cDNA: FLJ22139 fis, clone HEP20959.
AL133074 - Homo sapiens mRNA; cDNA DKFZp434M1317 (from clone DKFZp434M1317).
AL833652 - Homo sapiens mRNA; cDNA DKFZp667L1920 (from clone DKFZp667L1920).
AB017926 - Homo sapiens p53DINP1 mRNA for p53DINP1a, complete cds.
AB017927 - Homo sapiens p53DINP1 mRNA for p53DINP1b, complete cds.
AK130074 - Homo sapiens cDNA FLJ26564 fis, clone LNF04694.
AK123608 - Homo sapiens cDNA FLJ41614 fis, clone CTONG3002835.
AF409114 - Homo sapiens p53-induced protein SIP18 mRNA, complete cds, alternatively spliced.
AF409115 - Homo sapiens p53-induced protein SIP27 mRNA, complete cds, alternatively spliced.
AK125880 - Homo sapiens cDNA FLJ43892 fis, clone TESTI4009457, highly similar to Homo sapiens tumor protein p53 inducible nuclear protein 1 (TP53INP1).
BC074813 - Homo sapiens tumor protein p53 inducible nuclear protein 1, mRNA (cDNA clone MGC:103926 IMAGE:30915317), complete cds.
BC074868 - Homo sapiens tumor protein p53 inducible nuclear protein 1, mRNA (cDNA clone MGC:104023 IMAGE:30915467), complete cds.
AK315071 - Homo sapiens cDNA, FLJ96025, Homo sapiens tumor protein p53 inducible nuclear protein 1(TP53INP1), mRNA.
JD374758 - Sequence 355782 from Patent EP1572962.
JD490468 - Sequence 471492 from Patent EP1572962.
JD549158 - Sequence 530182 from Patent EP1572962.
JD426129 - Sequence 407153 from Patent EP1572962.
JD536938 - Sequence 517962 from Patent EP1572962.
JD346841 - Sequence 327865 from Patent EP1572962.
JD377802 - Sequence 358826 from Patent EP1572962.
JD361947 - Sequence 342971 from Patent EP1572962.
JD540623 - Sequence 521647 from Patent EP1572962.
JD438546 - Sequence 419570 from Patent EP1572962.
JD490455 - Sequence 471479 from Patent EP1572962.
JD475179 - Sequence 456203 from Patent EP1572962.
JD483376 - Sequence 464400 from Patent EP1572962.
JD551746 - Sequence 532770 from Patent EP1572962.
JD521726 - Sequence 502750 from Patent EP1572962.
JD356746 - Sequence 337770 from Patent EP1572962.
JD434092 - Sequence 415116 from Patent EP1572962.
JD501455 - Sequence 482479 from Patent EP1572962.
JD543911 - Sequence 524935 from Patent EP1572962.
JD563213 - Sequence 544237 from Patent EP1572962.
JD548406 - Sequence 529430 from Patent EP1572962.
JD451906 - Sequence 432930 from Patent EP1572962.
KJ895228 - Synthetic construct Homo sapiens clone ccsbBroadEn_04622 TP53INP1 gene, encodes complete protein.
JD093173 - Sequence 74197 from Patent EP1572962.
JD103455 - Sequence 84479 from Patent EP1572962.
JD315377 - Sequence 296401 from Patent EP1572962.
JD235327 - Sequence 216351 from Patent EP1572962.
JD044898 - Sequence 25922 from Patent EP1572962.
JD334057 - Sequence 315081 from Patent EP1572962.
JD046830 - Sequence 27854 from Patent EP1572962.
JD147406 - Sequence 128430 from Patent EP1572962.
JD044015 - Sequence 25039 from Patent EP1572962.
JD269776 - Sequence 250800 from Patent EP1572962.
JD260595 - Sequence 241619 from Patent EP1572962.
JD326635 - Sequence 307659 from Patent EP1572962.
JD093920 - Sequence 74944 from Patent EP1572962.
JD295031 - Sequence 276055 from Patent EP1572962.
JD109385 - Sequence 90409 from Patent EP1572962.
JD289737 - Sequence 270761 from Patent EP1572962.
JD180460 - Sequence 161484 from Patent EP1572962.
JD047150 - Sequence 28174 from Patent EP1572962.
JD056659 - Sequence 37683 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96A56 (Reactome details) participates in the following event(s):

R-HSA-3215251 TP53INP1 and HIPK2 bind TP53
R-HSA-6799409 HIPK2 phosphorylates TP53
R-HSA-6804756 Regulation of TP53 Activity through Phosphorylation
R-HSA-6803204 TP53 Regulates Transcription of Genes Involved in Cytochrome C Release
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-5633008 TP53 Regulates Transcription of Cell Death Genes
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: NM_033285, NP_150601, P53DINP1, Q969R9, Q96A56, SIP, T53I1_HUMAN
UCSC ID: uc003yhg.1
RefSeq Accession: NM_033285
Protein: Q96A56 (aka T53I1_HUMAN)
CCDS: CCDS6265.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_033285.2
exon count: 4CDS single in 3' UTR: no RNA size: 5587
ORF size: 723CDS single in intron: no Alignment % ID: 99.98
txCdsPredict score: 1614.50frame shift in genome: no % Coverage: 99.93
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.