Human Gene MARK2 (ENST00000502399.7) from GENCODE V44
  Description: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. (from UniProt E9PC69)
RefSeq Summary (NM_001039469): This gene encodes a member of the Par-1 family of serine/threonine protein kinases. The protein is an important regulator of cell polarity in epithelial and neuronal cells, and also controls the stability of microtubules through phosphorylation and inactivation of several microtubule-associating proteins. The protein localizes to cell membranes. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2009].
Gencode Transcript: ENST00000502399.7
Gencode Gene: ENSG00000072518.23
Transcript (Including UTRs)
   Position: hg38 chr11:63,839,295-63,909,573 Size: 70,279 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg38 chr11:63,839,507-63,909,237 Size: 69,731 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:63,839,295-63,909,573)mRNA (may differ from genome)Protein (778 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
LynxMGIPubMedUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: E9PC69_HUMAN
DESCRIPTION: SubName: Full=Serine/threonine-protein kinase MARK2;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MARK2
Diseases sorted by gene-association score: asthenopia (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.26 RPKM in Esophagus - Mucosa
Total median expression: 518.08 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -104.80212-0.494 Picture PostScript Text
3' UTR -153.80336-0.458 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001772 - Kinase-assoc_KA1
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS
IPR015940 - UBA/transl_elong_EF1B_N_euk

Pfam Domains:
PF02149 - Kinase associated domain 1
PF00069 - Protein kinase domain

ModBase Predicted Comparative 3D Structure on E9PC69
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation

Cellular Component:
GO:0005654 nucleoplasm
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  AB188493 - Homo sapiens Mark2 mRNA for serine/threonine kinase, complete cds, clone: TH033C09.
AK225766 - Homo sapiens mRNA for Splice isoform 5 of Q7KZI7 variant, clone: FCC133G06.
AK307858 - Homo sapiens cDNA, FLJ97806.
HM005430 - Homo sapiens clone HTL-T-117 testicular tissue protein Li 117 mRNA, complete cds.
JD416870 - Sequence 397894 from Patent EP1572962.
BC084540 - Homo sapiens MAP/microtubule affinity-regulating kinase 2, mRNA (cDNA clone MGC:99619 IMAGE:4591688), complete cds.
AY562187 - Homo sapiens ser/thr protein kinase Emk1/MARK2 isoform EMK1A mRNA, partial cds, alternatively spliced.
BC008771 - Homo sapiens MAP/microtubule affinity-regulating kinase 2, mRNA (cDNA clone IMAGE:3139103), partial cds.
AK290339 - Homo sapiens cDNA FLJ76779 complete cds, highly similar to Homo sapiens MAP/microtubule affinity-regulating kinase 2 (MARK2), transcript variant 1, mRNA.
X97630 - H.sapiens mRNA for serine/threonine protein kinase EMK.
AY562188 - Homo sapiens ser/thr protein kinase Emk1/MARK2 isoform EMK1C mRNA, partial cds, alternatively spliced.
JD100093 - Sequence 81117 from Patent EP1572962.
AF387638 - Homo sapiens Ser/Thr protein kinase PAR-1Balpha mRNA, complete cds.
DQ893876 - Synthetic construct Homo sapiens clone IMAGE:100008336; FLH165188.01L; RZPDo839H01157D MAP/microtubule affinity-regulating kinase 2 (MARK2) gene, encodes complete protein.
DQ890693 - Synthetic construct clone IMAGE:100003323; FLH165192.01X; RZPDo839H01158D MAP/microtubule affinity-regulating kinase 2 (MARK2) gene, encodes complete protein.
BT007342 - Homo sapiens MAP/microtubule affinity-regulating kinase 2 mRNA, complete cds.
AB271694 - Homo sapiens Par1b mRNA for Ser/Thr protein kinase PAR-1Balpha splicing variant, complete cds.
Z25427 - H.sapiens protein-serine/threonine kinase gene, complete CDS.
DQ578603 - Homo sapiens piRNA piR-46715, complete sequence.
DQ589017 - Homo sapiens piRNA piR-56129, complete sequence.
JD307401 - Sequence 288425 from Patent EP1572962.
JD118251 - Sequence 99275 from Patent EP1572962.
JD373082 - Sequence 354106 from Patent EP1572962.
JD373083 - Sequence 354107 from Patent EP1572962.
JD470832 - Sequence 451856 from Patent EP1572962.
JD485631 - Sequence 466655 from Patent EP1572962.
JD407404 - Sequence 388428 from Patent EP1572962.
JD142423 - Sequence 123447 from Patent EP1572962.
JD424162 - Sequence 405186 from Patent EP1572962.
JD272779 - Sequence 253803 from Patent EP1572962.
JD474203 - Sequence 455227 from Patent EP1572962.
JD516110 - Sequence 497134 from Patent EP1572962.
JD390874 - Sequence 371898 from Patent EP1572962.
JD333642 - Sequence 314666 from Patent EP1572962.
JD416061 - Sequence 397085 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AB188493, E9PC69, E9PC69_HUMAN, ENST00000502399.1, ENST00000502399.2, ENST00000502399.3, ENST00000502399.4, ENST00000502399.5, ENST00000502399.6, uc058cry.1
UCSC ID: ENST00000502399.7
RefSeq Accession: NM_001039469
Protein: E9PC69 CCDS: CCDS41665.1, CCDS53649.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.