Mouse Gene Nek6 (ENSMUST00000112895.8) from GENCODE VM33
  Description: Mus musculus NIMA (never in mitosis gene a)-related expressed kinase 6 (Nek6), transcript variant 1, mRNA. (from RefSeq NM_001159631)
Gencode Transcript: ENSMUST00000112895.8
Gencode Gene: ENSMUSG00000026749.12
Transcript (Including UTRs)
   Position: mm39 chr2:38,401,826-38,475,778 Size: 73,953 Total Exon Count: 10 Strand: +
Coding Region
   Position: mm39 chr2:38,440,594-38,475,402 Size: 34,809 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Methods
Data last updated at UCSC: 2023-08-15 19:06:27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:38,401,826-38,475,778)mRNA (may differ from genome)Protein (313 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: NEK6_MOUSE
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase Nek6; EC=2.7.11.1; AltName: Full=Never in mitosis A-related kinase 6; Short=NimA-related protein kinase 6;
FUNCTION: Protein kinase which plays an important role in mitotic cell cycle progression. Required for chromosome segregation at metaphase-anaphase transition, robust mitotic spindle formation and cytokinesis. Phosphorylates ATF4, CIR1, PTN, RAD26L, RBBP6, RPS7, TRIP4, RPS6KB1 and histones H1 and H3. Phosphorylates KIF11 to promote mitotic spindle formation. Involved in G2/M phase cell cycle arrest induced by DNA damage. Inhibition of activity results in apoptosis. May contribute to tumorigenesis by suppressing p53/TP53-induced cancer cell senescence (By similarity). Phosphorylates STAT3.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium (By similarity).
ENZYME REGULATION: Binding to NEK9 stimulates its activity by releasing the autoinhibitory function of Tyr-108 (By similarity).
SUBUNIT: Interacts with NEK9, predominantly in mitosis. Interacts with KIF11 (via C-terminus). Interacts with APBB1 (via WW domain). Interacts with ANKRA2, ATF4, ARHGAP33, CDC42, CIR1, PRAM1, PTN, PRDX3, PIN1, RAD26L, RBBP6, RPS7, RPS6KB1 and TRIP4 (By similarity). Interacts with STAT3.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Nucleus speckle (By similarity). Cytoplasm, cytoskeleton, centrosome (By similarity). Cytoplasm, cytoskeleton, spindle pole (By similarity). Note=Co- localizes with APBB1 at the nuclear speckles. Co-localizes with PIN1 in the nucleus. Co-localizes with ATF4, CIR1, ARHGAP33, ANKRA2, CDC42, NEK9, RAD26L, RBBP6, RPS7, TRIP4, RELB and PHF1 in the centrosome. Localizes to spindle microtubules in metaphase and anaphase and to the midbody during cytokinesis (By similarity).
DOMAIN: Displays an autoinhibited conformation: Tyr-108 side chain points into the active site, interacts with the activation loop, and blocks the alphaC helix. The autoinhibitory conformation is released upon binding with NEK9 (By similarity).
PTM: Autophosphorylated. Phosphorylation at Ser-206 is required for its activation. Phosphorylated upon IR or UV-induced DNA damage. Phosphorylated by CHEK1 and CHEK2. Interaction with APBB1 down-regulates phosphorylation at Thr-210 (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. NEK Ser/Thr protein kinase family. NIMA subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • C006253 pirinixic acid
  • C016403 2,4-dinitrotoluene
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D015073 2-Acetylaminofluorene
  • C035207 4-amino-2,6-dinitrotoluene
  • C027576 4-hydroxy-2-nonenal
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D015124 8-Bromo Cyclic Adenosine Monophosphate
  • D000082 Acetaminophen
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -110.80195-0.568 Picture PostScript Text
3' UTR -126.90376-0.338 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain

ModBase Predicted Comparative 3D Structure on Q9ES70
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0001222 transcription corepressor binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019894 kinesin binding
GO:0019901 protein kinase binding
GO:0031625 ubiquitin protein ligase binding
GO:0033613 activating transcription factor binding
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0006974 cellular response to DNA damage stimulus
GO:0007049 cell cycle
GO:0007059 chromosome segregation
GO:0007346 regulation of mitotic cell cycle
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0023014 signal transduction by protein phosphorylation
GO:0030071 regulation of mitotic metaphase/anaphase transition
GO:0031098 stress-activated protein kinase signaling cascade
GO:0032147 activation of protein kinase activity
GO:0042981 regulation of apoptotic process
GO:0046777 protein autophosphorylation
GO:0051301 cell division

Cellular Component:
GO:0000922 spindle pole
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0016607 nuclear speck
GO:0032991 macromolecular complex
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AK029266 - Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4832406K10 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
AF218847 - Mus musculus NIMA-related serine/threonine kinase (Nek6) mRNA, complete cds.
AK086700 - Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930046H03 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
AK011519 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610022P10 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
AK075836 - Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210021J15 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
AK018168 - Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330414A07 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
AK004925 - Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300007C09 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
AK075717 - Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300017K19 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
AK089919 - Mus musculus B cells CRL-1669 BCL1 Clone 13.20-3B3 cDNA, RIKEN full-length enriched library, clone:G430003E02 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
BC019524 - Mus musculus NIMA (never in mitosis gene a)-related expressed kinase 6, mRNA (cDNA clone MGC:28570 IMAGE:4209097), complete cds.
AK170757 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630118J15 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence.
AK185671 - Mus musculus cDNA, clone:Y0G0134N12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054234, based on BLAT search.
AK188715 - Mus musculus cDNA, clone:Y0G0146E01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054234, based on BLAT search.
AK188114 - Mus musculus cDNA, clone:Y0G0144C04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054234, based on BLAT search.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9ES70 (Reactome details) participates in the following event(s):

R-MMU-2980720 NEK9 binds NEK6/NEK7 in the cytosol
R-MMU-2984258 NEK9 phosphorylates NEK6/NEK7
R-MMU-2990880 NEK6/NEK7 phosphorylates NUP98
R-MMU-2980767 Activation of NIMA Kinases NEK9, NEK6, NEK7
R-MMU-2980766 Nuclear Envelope Breakdown
R-MMU-68875 Mitotic Prophase
R-MMU-3301854 Nuclear Pore Complex (NPC) Disassembly
R-MMU-68886 M Phase
R-MMU-69278 Cell Cycle (Mitotic)
R-MMU-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: ENSMUST00000112895.1, ENSMUST00000112895.2, ENSMUST00000112895.3, ENSMUST00000112895.4, ENSMUST00000112895.5, ENSMUST00000112895.6, ENSMUST00000112895.7, NEK6_MOUSE, NM_001159631, Q3TCE9, Q8C6E6, Q9D0E2, Q9DBI8, Q9ES70, uc008jno.1, uc008jno.2, uc008jno.3, uc008jno.4
UCSC ID: ENSMUST00000112895.8
RefSeq Accession: NM_001159631
Protein: Q9ES70 (aka NEK6_MOUSE)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.