Mouse Gene Slc44a5 (ENSMUST00000239250.2) from GENCODE VM33
  Description: Slc44a5 (from geneSymbol)
Gencode Transcript: ENSMUST00000239250.2
Gencode Gene: ENSMUSG00000028360.11
Transcript (Including UTRs)
   Position: mm39 chr3:153,752,560-153,975,033 Size: 222,474 Total Exon Count: 22 Strand: +
Coding Region
   Position: mm39 chr3:153,752,631-153,973,417 Size: 220,787 Coding Exon Count: 22 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-15 19:06:27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:153,752,560-153,975,033)mRNA (may differ from genome)Protein (721 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGeneCardsPubMedSOURCEUniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.5071-0.176 Picture PostScript Text
3' UTR -498.301616-0.308 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BC086641 - Mus musculus solute carrier family 44, member 5, mRNA (cDNA clone MGC:99452 IMAGE:6417957), complete cds.
BC068154 - Mus musculus solute carrier family 44, member 5, mRNA (cDNA clone IMAGE:30535162), complete cds.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A668KLB5, BC068154, ENSMUST00000239250.1, uc288uqs.1
UCSC ID: ENSMUST00000239250.2
RefSeq Accession: NM_001081263

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.