Mouse Gene Ube2z (ENSMUST00000100528.4) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus ubiquitin-conjugating enzyme E2Z (Ube2z), mRNA. (from RefSeq NM_172300)
Gencode Transcript: ENSMUST00000100528.4
Gencode Gene: ENSMUSG00000014349.7
Transcript (Including UTRs)
   Position: mm10 chr11:96,047,432-96,065,388 Size: 17,957 Total Exon Count: 7 Strand: -
Coding Region
   Position: mm10 chr11:96,050,244-96,065,274 Size: 15,031 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:96,047,432-96,065,388)mRNA (may differ from genome)Protein (356 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: UBE2Z_MOUSE
DESCRIPTION: RecName: Full=Ubiquitin-conjugating enzyme E2 Z; EC=6.3.2.19; AltName: Full=Uba6-specific E2 conjugating enzyme 1; Short=Use1; AltName: Full=Ubiquitin carrier protein Z; AltName: Full=Ubiquitin-protein ligase Z;
FUNCTION: Catalyzes the covalent attachment of ubiquitin to other proteins. Specific substrate for UBA6, not charged with ubiquitin by UBE1. May be involved in apoptosis regulation (By similarity).
CATALYTIC ACTIVITY: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
PATHWAY: Protein modification; protein ubiquitination.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (By similarity).
SIMILARITY: Belongs to the ubiquitin-conjugating enzyme family.
SEQUENCE CAUTION: Sequence=AAH54412.1; Type=Erroneous initiation; Sequence=BAB24097.1; Type=Erroneous initiation; Sequence=BAC37014.1; Type=Frameshift; Positions=115;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.60114-0.488 Picture PostScript Text
3' UTR -962.102812-0.342 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000608 - UBQ-conjugat_E2
IPR016135 - UBQ-conjugating_enzyme/RWD

Pfam Domains:
PF00179 - Ubiquitin-conjugating enzyme

SCOP Domains:
54495 - UBC-like

ModBase Predicted Comparative 3D Structure on Q3UE37
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005524 ATP binding
GO:0016740 transferase activity
GO:0031625 ubiquitin protein ligase binding
GO:0061630 ubiquitin protein ligase activity
GO:0061631 ubiquitin conjugating enzyme activity

Biological Process:
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0006915 apoptotic process
GO:0016567 protein ubiquitination
GO:0043065 positive regulation of apoptotic process

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK077793 - Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830473M12 product:hypothetical Ubiquitin-conjugating enzymes containing protein, full insert sequence.
BC054412 - Mus musculus ubiquitin-conjugating enzyme E2Z (putative), mRNA (cDNA clone MGC:62703 IMAGE:2646768), complete cds.
AK152529 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830078F06 product:tripartite motif protein 34, full insert sequence.
AK168942 - Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920066K10 product:tripartite motif protein 34, full insert sequence.
AK153328 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830138O19 product:hypothetical Ubiquitin-conjugating enzymes containing protein, full insert sequence.
AK149770 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530015K19 product:tripartite motif protein 34, full insert sequence.
BC027266 - Mus musculus ubiquitin-conjugating enzyme E2Z (putative), mRNA (cDNA clone IMAGE:2648305), with apparent retained intron.
AK005524 - Mus musculus adult female placenta cDNA, RIKEN full-length enriched library, clone:1600023F01 product:hypothetical Ubiquitin-conjugating enzymes containing protein, full insert sequence.
AK180585 - Mus musculus cDNA, clone:Y0G0114P10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.
AK211733 - Mus musculus cDNA, clone:Y2G0122L02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.
AK212499 - Mus musculus cDNA, clone:Y2G0125C15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.
AK212571 - Mus musculus cDNA, clone:Y2G0125G15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.
AK180312 - Mus musculus cDNA, clone:Y0G0113L06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.
AK187506 - Mus musculus cDNA, clone:Y0G0142B15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.
AK208933 - Mus musculus cDNA, clone:Y2G0113E14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.
AK182447 - Mus musculus cDNA, clone:Y0G0122A13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.
AK047807 - Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030047H17 product:unclassifiable, full insert sequence.
AK203763 - Mus musculus cDNA, clone:Y1G0146B15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000014493, based on BLAT search.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04120 - Ubiquitin mediated proteolysis

Reactome (by CSHL, EBI, and GO)

Protein Q3UE37 (Reactome details) participates in the following event(s):

R-MMU-8852127 UBA6 conjugates ubiquitin to cytosolic E2 enzymes
R-MMU-983152 Transfer of ubiquitin from E1 to E2
R-MMU-983140 Transfer of Ub from E2 to substrate and release of E2
R-MMU-983157 Interaction of E3 with substrate and E2-Ub complex
R-MMU-8866652 Synthesis of active ubiquitin: roles of E1 and E2 enzymes
R-MMU-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-MMU-8852135 Protein ubiquitination
R-MMU-983169 Class I MHC mediated antigen processing & presentation
R-MMU-597592 Post-translational protein modification
R-MMU-1280218 Adaptive Immune System
R-MMU-392499 Metabolism of proteins
R-MMU-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A2A6M3, D11Moh35, NM_172300, Q3TFZ8, Q3U618, Q3UE37, Q7TMY6, Q8BVL2, Q9DAU4, UBE2Z_MOUSE, uc007lbd.1, uc007lbd.2, uc007lbd.3
UCSC ID: uc007lbd.3
RefSeq Accession: NM_172300
Protein: Q3UE37 (aka UBE2Z_MOUSE)
CCDS: CCDS36289.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.