UCSC Mouse Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC Mouse Gene Sorter

genome assembly search

sort by display output

#	Name	VisiGene	BLASTP E-Value	Genome Position	Description
1	Col13a1	184827	1e-123	chr10 61,908,672	Mus musculus collagen, type XIII, alpha 1 (Col13a1), transcript variant 1, mRNA. (from RefSeq NM_007731)
2	Col23a1	184833	0.00000006	chr11 51,436,919	Mus musculus collagen, type XXIII, alpha 1 (Col23a1), mRNA. (from RefSeq NM_153393)
3	Col25a1	175059	0.0000007	chr3 130,388,011	Mus musculus collagen, type XXV, alpha 1 (Col25a1), transcript variant 1, mRNA. (from RefSeq NM_029838)
4	Marco	186306	0.000003	chr1 120,489,781	Mus musculus macrophage receptor with collagenous structure (Marco), mRNA. (from RefSeq NM_010766)
5	Col7a1	175069	0.00003	chr9 108,969,230	Stratified squamous epithelial basement membrane protein that forms anchoring fibrils which may contribute to epithelial basement membrane organization and adherence by interacting with extracellular matrix (ECM) proteins such as type IV collagen. (from UniProt Q63870)
6	Col24a1	184834	0.00002	chr3 145,422,241	Mus musculus collagen, type XXIV, alpha 1 (Col24a1), transcript variant 1, mRNA. (from RefSeq NM_027770)
7	Col4a1	157061	0.00003	chr8 11,255,624	Mus musculus collagen, type IV, alpha 1 (Col4a1), transcript variant 1, mRNA. (from RefSeq NM_009931)
8	Col22a1	166997	0.00004	chr15 71,915,011	Mus musculus collagen, type XXII, alpha 1 (Col22a1), mRNA. (from RefSeq NM_027174)
9	Col6a2	175068	0.00008	chr10 76,609,696	Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 1, mRNA. (from RefSeq NM_146007)
10	Col5a3	184838	0.00009	chr9 20,792,558	Mus musculus collagen, type V, alpha 3 (Col5a3), transcript variant 1, mRNA. (from RefSeq NM_016919)
11	Colec11	n/a	0.0001	chr12 28,608,751	Mus musculus collectin sub-family member 11 (Colec11), transcript variant 2, mRNA. (from RefSeq NM_027866)
12	Col6a4	182720	0.0004	chr9 106,043,630	Mus musculus collagen, type VI, alpha 4 (Col6a4), mRNA. (from RefSeq NM_026763)
13	Col11a2	145081	0.0007	chr17 34,052,640	May play an important role in fibrillogenesis by controlling lateral growth of collagen II fibrils (By similarity). (from UniProt Q64739)
14	Col1a2	175058	0.0006	chr6 4,523,518	Mus musculus collagen, type I, alpha 2 (Col1a2), mRNA. (from RefSeq NM_007743)
15	Col6a6	185205	0.0007	chr9 105,757,984	Mus musculus collagen, type VI, alpha 6 (Col6a6), transcript variant 1, mRNA. (from RefSeq NM_001102607)
16	Col6a3	184839	0.0006	chr1 90,805,406	Mus musculus collagen, type VI, alpha 3 (Col6a3), transcript variant 2, mRNA. (from RefSeq NM_001243009)
17	Col5a2	175066	0.0008	chr1 45,438,801	Mus musculus collagen, type V, alpha 2 (Col5a2), mRNA. (from RefSeq NM_007737)
18	Col9a1	175072	0.0008	chr1 24,215,147	Mus musculus collagen, type IX, alpha 1 (Col9a1), transcript variant 1, mRNA. (from RefSeq NM_007740)
19	Col16a1	164573	0.0008	chr4 130,073,558	Mus musculus collagen, type XVI, alpha 1 (Col16a1), mRNA. (from RefSeq NM_028266)
20	Col3a1	170275	0.001	chr1 45,330,622	Mus musculus collagen, type III, alpha 1 (Col3a1), mRNA. (from RefSeq NM_009930)
21	Col19a1	175057	0.001	chr1 24,425,733	Mus musculus collagen, type XIX, alpha 1 (Col19a1), mRNA. (from RefSeq NM_007733)
22	Col4a2	157063	0.001	chr8 11,381,046	Mus musculus collagen, type IV, alpha 2 (Col4a2), mRNA. (from RefSeq NM_009932)
23	Otol1	185624	0.001	chr3 70,018,160	Mus musculus otolin 1 (Otol1), mRNA. (from RefSeq NM_001018031)
24	Gldn	175076	0.001	chr9 54,314,136	Mus musculus gliomedin (Gldn), mRNA. (from RefSeq NM_177350)
25	Col6a1	175067	0.002	chr10 76,717,480	Mus musculus collagen, type VI, alpha 1 (Col6a1), mRNA. (from RefSeq NM_009933)
26	Col6a5	n/a	0.002	chr9 105,908,360	Mus musculus collagen, type VI, alpha 5 (Col6a5), mRNA. (from RefSeq NM_001167923)
27	Col18a1	149717	0.003	chr10 77,083,360	Mus musculus collagen, type XVIII, alpha 1 (Col18a1), transcript variant 1, mRNA. (from RefSeq NM_001109991)
28	Col2a1	154596	0.002	chr15 97,990,148	Mus musculus collagen, type II, alpha 1 (Col2a1), transcript variant 1, mRNA. (from RefSeq NM_031163)
29	Col27a1	184835	0.002	chr4 63,275,213	Mus musculus collagen, type XXVII, alpha 1 (Col27a1), mRNA. (from RefSeq NM_025685)
30	Col17a1	184829	0.003	chr19 47,669,219	Mus musculus collagen, type XVII, alpha 1 (Col17a1), transcript variant 2, mRNA. (from RefSeq NM_007732)
31	Col11a1	n/a	0.004	chr3 114,125,629	Mus musculus collagen, type XI, alpha 1 (Col11a1), mRNA. (from RefSeq NM_007729)
32	Col4a6	184837	0.004	chrX 141,319,739	Mus musculus collagen, type IV, alpha 6 (Col4a6), mRNA. (from RefSeq NM_053185)
33	Colq	n/a	0.004	chr14 31,550,232	Mus musculus collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase (Colq), mRNA. (from RefSeq NM_009937)
34	Col4a3	175062	0.004	chr1 82,654,517	Mus musculus collagen, type IV, alpha 3 (Col4a3), mRNA. (from RefSeq NM_007734)
35	Col15a1	n/a	0.006	chr4 47,260,664	Mus musculus collagen, type XV, alpha 1 (Col15a1), mRNA. (from RefSeq NM_009928)
36	Colec10	n/a	0.005	chr15 54,438,566	Mus musculus collectin sub-family member 10 (Colec10), mRNA. (from RefSeq NM_173422)
37	C1qtnf9	172765	0.005	chr14 60,774,501	Mus musculus C1q and tumor necrosis factor related protein 9 (C1qtnf9), mRNA. (from RefSeq NM_183175)
38	Msr1	169904	0.008	chr8 39,612,152	Mus musculus macrophage scavenger receptor 1 (Msr1), transcript variant 2, mRNA. (from RefSeq NM_001113326)
39	Col10a1	162174	0.007	chr10 34,393,533	Mus musculus collagen, type X, alpha 1 (Col10a1), mRNA. (from RefSeq NM_009925)
40	Scara5	172417	0.009	chr14 65,715,614	Mus musculus scavenger receptor class A, member 5 (Scara5), transcript variant 1, mRNA. (from RefSeq NM_028903)
41	Col8a1	175070	0.009	chr16 57,689,497	Mus musculus collagen, type VIII, alpha 1 (Col8a1), mRNA. (from RefSeq NM_007739)