UCSC In-Silico PCR

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UCSC In-Silico PCR

>chrX:101353111-101353449 339bp CCAACTGATTCTAATCTTTGAGGTTG TCAGTCTTTGGTGGCTGAATG CCAACTGATTCTAATCTTTGAGGTTGatctaggaagactaggacccctgc tatccaaaaagactgcaaaccaatttaataatttttttcaccttctaggg gttttgatgtgggaaatttactccctggggaagatgccatatgagagatt tactaacagtgagactgctgaacacattgcccaaggcctacgtctctaca ggcctcatctggcttcagagaaggtatataccatcatgtacagttgctgg catgaggtaagtgctttattaggatctcttaaattatttccttgaatcta cttgcccatttagctggcCATTCAGCCACCAAAGACTGA

Primer Melting Temperatures


	`Forward: 61.5 C ccaactgattctaatctttgaggttg Reverse: 61.2 C tcagtctttggtggctgaatg`The temperature calculations are done assuming 50 mM salt and 50 nM annealing oligo concentration. The code to calculate the melting temp comes from Primer3, the formula by Rychlik W, Spencer WJ and Rhoads RE NAR 1990, which can be activated in Primer3 with PRIMER_TM_FORMULA=0.

Help


	What is chr_alt & chr_fix? Replicating in-Silico PCR results on local machine