UCSC In-Silico PCR
 
>chr19:10365451-10365972 522bp CCACTTGCCCTGTGTCACC GGATGAACACAGAAACCCACC
CCACTTGCCCTGTGTCACCcagctgggcctgcaacccaggtccctgacca
gcccctcactgtgtttccccccagcttcaaggactgcatcccgcgctcct
tccgccggcatatccggcagcacagcgccctgacccggctgcgccttcgg
aacgtcttccgcaggttcctgcgggacttccagccgggccgactctccca
gcagatggtcatggtcaaatacctagccacactcgagcggctggcacccc
gcttcggcacagagcgtgtgcccgtgtgccacctgaggctgctggcccag
gccgagggggagccctgctacatccgggacagtggggtggcccctacaga
ccctggccctgagtctgctgctgggcccccaacccacgaggtgctggtga
caggcactggtggcatccagtggtggccagtagaggaggaggtgaacaag
gaggaggtgagcaaggcgccccttccgccctgggggttcaggttgggctg
gGGTGGGTTTCTGTGTTCATCC

Primer Melting Temperatures
  Forward: 62.6 C ccacttgccctgtgtcacc
Reverse: 61.6 C ggatgaacacagaaacccacc
The temperature calculations are done assuming 50 mM salt and 50 nM annealing oligo concentration. The code to calculate the melting temp comes from Primer3, the formula by Rychlik W, Spencer WJ and Rhoads RE NAR 1990, which can be activated in Primer3 with PRIMER_TM_FORMULA=0.

Help
  What is chr_alt & chr_fix?
Replicating in-Silico PCR results on local machine