Schema for DNase Clusters - ENCODE Digital DNaseI Hypersensitivity Clusters
  Database: hg18    Primary Table: wgEncodeRegDnaseClustered    Row Count: 956,991   Data last updated: 2011-04-30
Format description: Browser extensible data
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 120int(10) unsigned Start position in chromosome
chromEnd 330int(10) unsigned End position in chromosome
name 27varchar(255) Name of item
score 289int(10) unsigned Optional score, nominal range 0-1000

Sample Rows
 
binchromchromStartchromEndnamescore
585chr112033027289
585chr14205701132
585chr181260814505101
585chr18638086590284
586chr12254602256504302
586chr1226800227010459
586chr122748022775038427
586chr12307802309302216
588chr151130051151036278
589chr15304205306508317

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

DNase Clusters (wgEncodeRegDnaseClustered) Track Description
 

Description

This track shows DNase hypersensitive areas assayed in a large collection of cell types. Regulatory regions in general, and promoters in particular, tend to be DNase sensitive. Additional views of this dataset and additional documentation on the methods used for this track are available at the UW DNaseI HS page. The Peaks view in that page is the basis for the clusters shown here, which combine data from the peaks of the different cell lines in that page.

Display conventions

A gray box indicates the extent of the hypersensitive region. The darkness is proportional to the maximum signal strength observed in any cell line. The number to the left of the box shows how many cell lines are hypersensitive in the region.

Credits

This track shows data from the UW ENCODE group.

Data Release Policy

Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. The full data release policy for ENCODE is available here.