Schema for Contigs - Contig fragments used in the assembly
  Database: mm10    Primary Table: assemblyFrags    Row Count: 20,447   Data last updated: 2012-09-12
Format description: Browser extensible data
fieldexampleSQL type info description
bin 607smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 3000000int(10) unsigned range Start position in chromosome
chromEnd 3002129int(10) unsigned range End position in chromosome
name CAAA01188926.1varchar(255) values Name of item
score 0int(10) unsigned range Optional score, nominal range 0-1000
strand +char(1) values + or -

Sample Rows
 
binchromchromStartchromEndnamescorestrand
607chr130000003002129CAAA01188926.10+
607chr130031183009919CAAA01109096.10+
9chr130099193233383AC157543.80-
76chr132333833384564AC157545.120+
76chr133845643596235AC157542.110+
76chr135962353786391AC102110.80+
76chr137863913878226AC174931.20-
76chr138782264000524AC102154.90-
76chr140005244133180AC132914.70-
9chr141331804277898AC111099.150+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Contigs (assemblyFrags) Track Description
 

Description

This track shows the locations of mouse contigs used to construct the assembly. The data for the track is from the AGP files in the assembly.