Schema for Map Contigs - Physical Map Contigs
  Database: mm9    Primary Table: ctgPos    Row Count: 316   Data last updated: 2007-07-23
Format description: Where a contig is inside of a chromosome.
fieldexampleSQL type info description
contig NT_039169.7varchar(255) values Name of contig
size 19423349int(10) unsigned range Size of contig
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 3000000int(10) unsigned range Start in chromosome
chromEnd 22423349int(10) unsigned range End in chromosome

Sample Rows
 
contigsizechromchromStartchromEnd
NT_039169.719423349chr1300000022423349
NT_039170.752628781chr12247334975102130
NT_039173.710225548chr17511813085343678
NT_078297.670622195chr187343678157965873
NT_039185.726822937chr1158098873184921810
NT_039189.78497847chr1185327810193825657
NT_039190.73319775chr1193875657197195432
NT_039490.74246542chr1030000007246542
NT_039492.750286071chr10729654257582613
NT_039500.772324642chr1057668613129993255

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Map Contigs (ctgPos) Track Description
 

Description

This track shows the locations of mouse contigs on the physical map. The underlying data are derived from NCBI information specific to this assembly. Although the NCBI data indicates the orientations of the contigs based on how they were assembled into the final sequence, all contigs in this track are oriented to the "+" strand.