Schema for mrnaOrientInfo
  Database: vicPac2    Primary Table: mrnaOrientInfo    Row Count: 264   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom ABRR02185281varchar(255) values Reference sequence chromosome or scaffold
chromStart 39int(10) unsigned range Start position in chromosome
chromEnd 358int(10) unsigned range End position in chromosome
name AM998810varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      vicPac2.all_mrna.qName (via mrnaOrientInfo.name)
      vicPac2.refFlat.name (via mrnaOrientInfo.name)
      vicPac2.refGene.name (via mrnaOrientInfo.name)
      vicPac2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585ABRR0218528139358AM99881000000
585ABRR0218528139358AM99881100000
585ABRR0218528139358AM99881200000
585ABRR0218528139358AM99881300000
585ABRR0218528139358AM99881400000
585ABRR0218528139358AM99881500000
585ABRR0218528139358AM99881600000
585ABRR0218528139358AM99881700000
585ABRR0218528139358AM99881800000
585ABRR0218528139358AM99881900000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.