Schema for mrnaOrientInfo
  Database: apiMel2    Primary Table: mrnaOrientInfo    Row Count: 127,159   Data last updated: 2020-08-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 596smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Group1varchar(255) values Reference sequence chromosome or scaffold
chromStart 1546395int(10) unsigned range Start position in chromosome
chromEnd 1546553int(10) unsigned range End position in chromosome
name AM158085varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        apiMel2.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
596Group115463951546553AM15808501000
618Group144427414446919AY898652728000
9Group152380575243875AJ55553740000
628Group156449115660699DQ485319200190
628Group156449115685027DQ485318300190
628Group156451295684867AY89757031000
628Group156451295684867AY93985631000
631Group160454356048752DQ3420417160330
685Group11313595613173481AJ245824116000
713Group11687899216885781DQ66718852000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.