Affy U74 Track Settings
 
Alignments of Affymetrix Consensus Sequences from MG-U74 v2 (A,B, and C)   (All Expression and Regulation tracks)

Display mode:   

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
View table schema
Data last updated at UCSC: 2007-09-10

Description

This track shows the location of the consensus sequences used for the selection of probes on the Affymetrix MG-U74v2 set (A,B and C) of chips.

Methods

Consensus sequences were downloaded from the Affymetrix Product Support and mapped to the genome with blat followed by pslReps using the parameters -minCover=0.3, -minAli=0.95 and -nearTop=0.005.

Credits

Thanks to Affymetrix for the data underlying this track.