Stanf ChIP Tracks
Stanford ChIP-chip tracks   (All Pilot ENCODE Chromatin Immunoprecipitation tracks)

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Stanf ChIP  Stanford ChIP-chip (HCT116, Jurkat, K562 cells; Sp1, Sp3 ChIP)  Source data version: ENCODE June 2005 Freeze
Stanf ChIP Score  Stanford ChIP-chip Smoothed Score  Source data version: ENCODE June 2005 Freeze


This super-track combines related tracks of ChIP-chip data generated by the Stanford ENCODE group. ChIP-chip, also known as genome-wide location analysis, is a technique for isolation and identification of DNA sequences bound by specific proteins in cells.

These tracks contain data for the Sp1 and Sp3 transcription factors in multiple cell lines, including HCT116 (colon epithelial carcinoma), Jurkat (T-cell lymphoblast), and K562 (myeloid leukemia).


The Sp1 and Sp3 data were generated in the Richard M. Myers lab at Stanford University (now at HudsonAlpha Institute for Biotechnology).


Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature. 2007 Aug 2;448, 553-60.

Trinklein ND, Murray JI, Hartman SJ, Botstein D, Myers RM. The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response. Mol. Biol. Cell. 2004 Mar;15(3):1254-61.