This super-track combines related tracks from Yale Transcript Map analysis.
These tracks contain transcriptome data from different
cell lines and biological samples as well as analysis of transcriptionally
active regions (TARs).
Experiments were performed with Yale MAS (Maskless Array Synthesizer)
ENCODE oligonucleotide microarray (see NCBI
GEO GPL2105 for details of this array design) as well as
the Affymetrix ENCODE oligonucleotide microarray. Multiple biological samples
were assayed, such as total RNA from human NB4 cells. Experiments also included
chemical treatments such as retinoic acid (RA) treatments.
Yale MAS RNA, Yale MAS TAR
These data were generated and analyzed by the the labs of Michael Snyder,
Mark Gerstein and Sherman Weissman at Yale University.
Yale RNA, Yale TAR
These data were generated and analyzed by the Yale/Affymetrix
collaboration among the labs of Michael Snyder, Mark Gerstein and
Sherman Weissman at Yale University and Tom Gingeras at Affymetrix.
These data were generated and analyzed by the lab of Mark Gerstein
at Yale University.
Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X,
Rinn JL, Tongprasit W, Samanta M et al.
Global identification of human transcribed sequences with
genome tiling arrays.
Science. 2004 Dec 24;306(5705):2242-6.
Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S,
Long J, Stern D, Tammana H et al.
Transcriptional maps of 10 human chromosomes at 5-nucleotide
Science. 2005 May 20;308(5725):1149-54.
Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL,
Fodor SP, Gingeras TR.
Large-scale transcriptional activity in chromosomes 21 and 22.
Science. 2002 May 3;296(5569):916-9.
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Lineage specificity of gene expression patterns.
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The transcriptional activity of human Chromosome 22.
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