Agilent Array Track Settings
 
Agilent Microarray Probesets   (All Variation and Repeats tracks)

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 Affy SNP 6.0  Affymetrix SNP 6.0   Schema 
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 Ag CGH 1x1m  Agilent SurePrint G3 Human CGH Microarray 1x1M AMADID 021529   Schema 
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 Affy SNP 6.0 SV  Affymetrix SNP 6.0 Structural Variation   Schema 
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 Ag HRD 1x1m  Agilent SurePrint G3 Human High-Resolution Microarray 1x1M AMADID 023642   Schema 
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 Affy SNP 5.0  Affymetrix SNP 5.0   Schema 
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 Ag CGH 2x400k  Agilent SurePrint G3 Human CGH Microarray 2x400K AMADID 021850   Schema 
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 Affy 250KNsp  Affymetrix GeneChip Human Mapping 250K Nsp   Schema 
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 Ag CGH 4x180k  Agilent SurePrint G3 Human CGH Microarray 4x180K AMADID 022060   Schema 
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 Affy 250KSty  Affymetrix GeneChip Human Mapping 250K Sty   Schema 
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 Ag CGH 8x60k  Agilent SurePrint G3 Human CGH Microarray 8x60K AMADID 021924   Schema 
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 Ag CGH 1x244k  Agilent SurePrint HD Human CGH Microarray 1x244K AMADID 014693   Schema 
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 Illumina 650  Illumina Human Hap 650v3   Schema 
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 Ag CGH 2x105k  Agilent SurePrint HD Human CGH Microarray 2x105K AMADID 014698   Schema 
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 Illumina 550  Illumina Human Hap 550v3   Schema 
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 Ag CGH 4x44k  Agilent SurePrint HD Human CGH Microarray 4x44K AMADID 014950   Schema 
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 Illumina 300  Illumina Human Hap 300v3   Schema 
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 Illumina 1M-Duo  Illumina Human1M-Duo   Schema 
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 Illumina Cyto-12  Illumina Human CytoSNP-12   Schema 
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 Illumina 660W-Q  Illumina Human 660W-Quad   Schema 
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 Illumina Omni1-Q  Illumina Human Omni1-Quad   Schema 
    

Description

This track displays the probes from the Agilent Catalog Oligonucleotide Microarrays.

Agilent's oligonucleotide aCGH platform facilitates genome-wide DNA copy number variation profiling without amplification or complexity reduction. Probe coverage spans both coding and non-coding regions, with emphasis on well-characterized genes, particularly cancer-relevant genes.

The track consists of the following subtracks:

SurePrint G3 CGH Microarray 1x1M AMADID 021529

This annotation displays the probe positions for the SurePrint G3 Human CGH 1 x 1M microarray from Agilent Technologies, Inc.
  • Over 963,000 coding and non-coding human sequences represented
  • 2.1 kb overall median probe spatial resolution
  • 1 x 1M slide format printed using Agilent's 60-mer SurePrint technology

SurePrint G3 High-Resolution Discovery Microarray 1x1M AMADID 023642

This annotation displays the probe positions for the SurePrint G3 Human Human High-Resolution Discovery 1 x 1M microarray from Agilent Technologies, Inc.
  • 963,000+ human sequences represented
  • 2.6 KB overall median probe spacing, 3 KB average probe spacing
  • 1 x 1M slide format printed using Agilent's 60-mer SurePrint technology
  • Unlike the catalog CGH and CNV microarrays, this array design is not a gene-biased or CNV-biased design.

SurePrint G3 CGH Microarray 2x400K AMADID 021850

This annotation displays the probe positions for the SurePrint G3 Human CGH 2 x 400K microarray from Agilent Technologies, Inc. This format has the flexibility to run two samples on a single chip.
  • Over 411,000 coding and non-coding human sequences represented
  • 5.3 kb overall median probe spatial resolution
  • 2 x 400K slide format printed using Agilent's 60-mer SurePrint technology

SurePrint G3 CGH Microarray 4x180K AMADID 022060

This annotation displays the probe positions for the SurePrint G3 Human CGH 4 x 180K microarray from Agilent Technologies, Inc. This format has the flexibility to run four samples on a single chip.
  • Over 170,000 coding and non-coding human sequences represented
  • 13 kb overall median probe spatial resolution
  • 4 x 180K slide format printed using Agilent's 60-mer SurePrint technology

SurePrint G3 CGH Microarray 8x60K AMADID 021924

This annotation displays the probe positions for the SurePrint G3 Human CGH 8 x 60K microarray from Agilent Technologies, Inc. This format has the flexibility to run eight samples on a single chip.
  • Over 55,000 coding and non-coding human sequences represented
  • 41.4 kb overall median probe spatial resolution
  • 8x60K slide format printed using Agilent's 60-mer SurePrint technology

CGH Microarray 1x244k AMADID 014693

This annotation displays the probe positions for the Human Genome CGH 1 x 244K microarray from Agilent Technologies, Inc.
  • Over 236,000 coding and non-coding human sequences represented
  • 8.9 kb overall median probe spatial resolution (7.4 kb median probe spacing in Refseq genes)
  • 1 x 244K slide format

CGH Microarray 2x105k AMADID 014698

This annotation displays the probe positions for the Human Genome CGH 2 x 105K microarray from Agilent Technologies, Inc.
  • Over 99,000 coding and non-coding human sequences represented
  • 21.7 kb overall median probe spatial resolution (18.9 kb median probe spacing in Refseq genes)
  • 2 x 105K slide format

CGH Microarray 4x44k AMADID 014950

This annotation displays the probe positions for the Human Genome CGH 4 x 44K microarray from Agilent Technologies, Inc.
  • Over 42,000 coding and non-coding human sequences represented
  • 43 kb overall median probe spatial resolution (24.2 kb median probe spacing in Refseq genes)
  • 4 x 44K slide format

References

More information on the Agilent Oligonucleotide Microarrays is available here.

Barrett MT, Scheffer A, Ben-Dor A, Sampas N, Lipson D, Kincaid R, Tsang P, Curry B, Baird K, Meltzer PS et al. Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA. PNAS. 2004 Dec 21;101(51):17765-70.

Credits

Thanks to Shane Giles, Peter Webb, and Dione Bailey from Agilent Technologies for providing these data.