This super-track combines related tracks of genome-wide ChIP-chip data generated by
the Wadelius lab at Uppsala University, Sweden.
These tracks display localization of two transcription factors (USF1 and USF2) and
acetylated histone H3 (H3ac) in a liver cell line (HepG2), as assayed by
Affymetrix arrays tiled at 35 bp resolution.
For each factor, the average probe level intensities as well as
identified positive regions are presented.
The raw data for these tracks is available at EBI ArrayExpress, as experiment E-TABM-314.
These experiments were performed in the Claes Wadelius lab Dept. of Genetics and Pathology, Uppsala University, Sweden. Microarray hybridizations were performed at Affymetrix Inc., Santa Clara, USA. Data processing and statistical analysis was done at The Linnaeus Centre for Bioinformatics, Uppsala University, Sweden.
Rada-Iglesias A, Ameur A, Kapranov P, Enroth S, Komorowski J, Gingeras TR,
maps of USF1 and USF2 binding and histone H3 acetylation reveal
new aspects of promoter structure and candidate genes for common human
Genome Res. 2008 Mar;18(3):380-92.
Rada-Iglesias A, Wallerman O, Koch C, Ameur A, Enroth S, Clelland G, Wester K,
Wilcox S, Dovey OM, Ellis PD et. al.
sites for metabolic disease related transcription factors inferred at base
pair resolution by chromatin immunoprecipitation and genomic microarrays.
Hum Mol Genet. 2005 Nov 15;14(22):3435-47.