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FlyReg: Drosophila DNase I Footprint Database   (All Expression and Regulation tracks)

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Data schema/format description and download
Assembly: D. melanogaster Apr. 2004 (BDGP R4/dm2)
Data last updated at UCSC: 2005-02-23

Description

This track shows DNase I Footprint data from FlyReg version 2.0. FlyReg provides access to results of the systematic curation and genome annotation of 1,350 DNase I footprints for the fruitfly D. melanogaster reported in Bergman, C.M. et al. (see below).

When available, a footprint motif is also displayed, based on a MEME matrix computed by Dan Pollard on the set of footprints for this factor.

Credits

Thanks to Casey Bergman for providing the FlyReg data. If used in published work, please cite Bergman CM, Carlson JW, Celniker SE. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics. 2005 Apr 15;21(8):1747-9. PMID: 15572468

Thanks to Dan Pollard for providing the footprint motif matrices.