Description
This track depicts gaps in the assembly. These gaps - with the exception of
intractable heterochromatic gaps - will be closed during the finishing process.
Gaps are represented as black boxes in this track. If the relative order and orientation
of the contigs on either side of the gap are known, it is a bridged gap and a
white line is drawn through the black box representing the gap.
This assembly contains the following principal types of gaps:
- Fragment - Gaps between the contigs of a draft clone.
(In this context, a contig is a set of overlapping sequence reads.)
- Other - Sequences of gaps not marked in the assembly AGP files.
|