Genoscope GAZE Track Settings
 
Genoscope Annotations Using GAZE   (All Genes and Gene Predictions tracks)

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Data schema/format description and download
Assembly: Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2)
Data last updated at UCSC: 2010-01-06

Description

This track shows Genoscope gene model annotations from the GAZE program written by Kevin Howe. These annotations were computed using GAZE with a custom designed gene model. GAZE integrates information from Geneid, Genscan, Exofish (Human, Mouse and Fugu), Genewise (Human and Mouse) and Tetraodon cDNAs.

Methods

For a description of the GAZE program and the model that underlies it, refer to:

Howe KL, Chothia T, Durbin R. GAZE: a generic framework for the integration of gene-prediction data by dynamic programming. Genome Res. 2002 Sep;12(9):1418-27. PMID: 12213779; PMC: PMC186661

GAZE was run on masked Tetraodon genomic DNA using parameters calibrated for the Tetraodon genome.

Credits

Thanks to Genoscope for providing these data.