Description
This track displays the probes from the
Agilent Catalog Oligonucleotide Microarrays.
Agilent's oligonucleotide aCGH platform
facilitates genome-wide DNA copy number variation profiling
without amplification or complexity reduction. Probe coverage spans both
coding and non-coding regions, with emphasis on well-characterized
genes, particularly cancer-relevant genes.
The track consists of the following subtracks:
SurePrint G3 CGH Microarray 1x1M AMADID 021529
This annotation displays the probe positions for the SurePrint G3 Human CGH
1 x 1M microarray from Agilent Technologies, Inc.
- Over 963,000 coding and non-coding human sequences represented
- 2.1 kb overall median probe spatial resolution
- 1 x 1M slide format printed using Agilent's 60-mer SurePrint technology
SurePrint G3 High-Resolution Discovery Microarray 1x1M AMADID 023642
This annotation displays the probe positions for the SurePrint G3 Human
Human High-Resolution Discovery 1 x 1M microarray from Agilent Technologies, Inc.
- 963,000+ human sequences represented
- 2.6 KB overall median probe spacing, 3 KB average probe spacing
- 1 x 1M slide format printed using Agilent's 60-mer SurePrint technology
- Unlike the catalog CGH and CNV microarrays, this array design is not a
gene-biased or CNV-biased design.
SurePrint G3 CGH Microarray 2x400K AMADID 021850
This annotation displays the probe positions for the SurePrint
G3 Human CGH 2 x 400K microarray from Agilent Technologies, Inc.
This format has the flexibility to run two samples on a single chip.
- Over 411,000 coding and non-coding human sequences represented
- 5.3 kb overall median probe spatial resolution
- 2 x 400K slide format printed using Agilent's 60-mer SurePrint technology
SurePrint G3 CGH Microarray 4x180K AMADID 022060
This annotation displays the probe positions for the SurePrint G3 Human CGH
4 x 180K microarray from Agilent Technologies, Inc. This format has the
flexibility to run four samples on a single chip.
- Over 170,000 coding and non-coding human sequences represented
- 13 kb overall median probe spatial resolution
- 4 x 180K slide format printed using Agilent's 60-mer SurePrint technology
SurePrint G3 CGH Microarray 8x60K AMADID 021924
This annotation displays the probe positions for the SurePrint G3 Human
CGH 8 x 60K microarray from Agilent Technologies, Inc. This format has
the flexibility to run eight samples on a single chip.
- Over 55,000 coding and non-coding human sequences represented
- 41.4 kb overall median probe spatial resolution
- 8x60K slide format printed using Agilent's 60-mer SurePrint technology
CGH Microarray 1x244k AMADID 014693
This annotation displays the probe positions for the Human Genome CGH 1
x 244K microarray from Agilent Technologies, Inc.
- Over 236,000 coding and non-coding human sequences represented
- 8.9 kb overall median probe spatial resolution (7.4 kb median probe spacing
in Refseq genes)
- 1 x 244K slide format
CGH Microarray 2x105k AMADID 014698
This annotation displays the probe positions for the Human Genome CGH 2
x 105K microarray from Agilent Technologies, Inc.
- Over 99,000 coding and non-coding human sequences represented
- 21.7 kb overall median probe spatial resolution (18.9 kb median probe
spacing in Refseq genes)
- 2 x 105K slide format
CGH Microarray 4x44k AMADID 014950
This annotation displays the probe positions for the Human Genome CGH 4
x 44K microarray from Agilent Technologies, Inc.
- Over 42,000 coding and non-coding human sequences represented
- 43 kb overall median probe spatial resolution (24.2 kb median probe
spacing in Refseq genes)
- 4 x 44K slide format
References
More information on the Agilent Oligonucleotide Microarrays is
available
here.
Barrett MT, Scheffer A, Ben-Dor A, Sampas N, Lipson D, Kincaid R, Tsang P,
Curry B, Baird K, Meltzer PS et al.
Comparative genomic hybridization using oligonucleotide
microarrays and total genomic DNA.
PNAS. 2004 Dec 21;101(51):17765-70.
Credits
Thanks to Shane Giles, Peter Webb, and Dione Bailey from Agilent
Technologies for providing these data.
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