Each track can be turned on/off individually.
All tracks displays read density data in form of wiggle plots.
For Histone/DNase, there also enrichment signal tracks using MACS based on pvalue or fold Change.
There are also imputed signal for segmentations tracks.
Histone/DNase Signal/Peak Color Legend
DNase - DNase
H2A.Z - H2A.Z
H3K27ac - H3K27ac
H3K27me3 - H3K27me3
H3K36me3 - H3K36me3
H3K4me1 - H3K4me1
H3K4me2 - H3K4me2
H3K4me3 - H3K4me3
H3K79me2 - H3K79me2
H3K9ac - H3K9ac
H3K9me3 - H3K9me3
H4K20me1 - H4K20me1
Primary Core Marks segmentation
State 1 - Red - TssA (Active_TSS)
State 2 - OrangeRed - TssAFlnk (Flanking_Active_TSS)
State 3 - LimeGreen - TxFlnk (Transcr_at_gene_5_and_3primer)
State 4 - Green - Tx (Strong_transcription)
State 5 - DarkGreen - TxWk (Weak_transcription)
State 6 - GreenYellow - EnhG (Genic_enhancers)
State 7 - Yellow - Enh (Enhancers)
State 8 - MediumAquamarine - ZNF/Rpts (ZNF_genes&repeats)
State 9 - PaleTurquoise - Het (Heterochromatin)
State 10 - IndianRed - TssBiv (Bivalent/Poised_TSS)
State 11 - DarkSalmon - BivFlnk (Flanking_Bivalent_TSS/Enh)
State 12 - DarkKhaki - EnhBiv (Bivalent_Enhancer)
State 13 - Silver - ReprPC (Repressed_PolyComb)
State 14 - Gainsboro - ReprPCWk (Weak_Repressed_PolyComb)
State 15 - White - Quies (Quiescent/Low)
Auxiliary Core Marks + K27ac segmentation
State 1 - Red - TssA (Active_TSS)
State 2 - Orange_Red - TssFlnk (Flanking_TSS)
State 3 - Orange_Red - TssFlnkU (Flanking_TSS_Upstream)
State 4 - Orange_Red - TssFlnkD (Flanking_TSS_Downstream)
State 5 - Green - Tx (Strong_transcription)
State 6 - DarkGreen - TxWk (Weak_transcription)
State 7 - GreenYellow - EnhG1 (Genic_enhancer1)
State 8 - GreenYellow - EnhG2 (Genic_enhancer2)
State 9 - Orange - EnhA1 (Active_Enhancer1)
State 10 - Orange - EnhA2 (Active_Enhancer2)
State 11 - Yellow - EnhWk (Weak_Enhancer)
State 12 - Medium_Aquamarine - ZNF/Rpts (ZNF_genes&repeats)
State 13 - PaleTurquoise - Het (Heterochromatin)
State 14 - IndianRed - TssBiv (Bivalent/Poised_TSS)
State 15 - DarkKhaki - EnhBiv (Bivalent_Enhancer)
State 16 - Silver - ReprPC (Repressed_PolyComb)
State 17 - Gainsboro - ReprPCWk (Weak_Repressed_PolyComb)
State 18 - White - Quies (Quiescent/Low)
Imputed Marks Segmentation
State 1 - Red - TssA (Active TSS)
State 2 - Orange Red - PromU (Promoter Upstream TSS)
State 3 - Orange Red - PromD1 (Promoter Downstream TSS with DNase)
State 4 - Orange Red - PromD2 (Promoter Downstream TSS)
State 5 - Green - Tx5' (Transcription 5')
State 6 - Green - Tx (Transcription)
State 7 - Green - Tx3' (Transcription 3')
State 8 - Light Green - TxWk (Weak transcription)
State 9 - GreenYellow - TxReg (Transcription Regulatory)
State 10 - GreenYellow - TxEnh5' (Transcription 5' Enhancer)
State 11 - GreenYellow - TxEnh3' (Transcription 3' Enhancer)
State 12 - GreenYellow - TxEnhW (Transcription Weak Enhancer)
State 13 - Orange - EnhA1 (Active Enhancer 1)
State 14 - Orange - EnhA2 (Active Enhancer 2)
State 15 - Orange - EnhAF (Active Enhancer Flank)
State 16 - Yellow - EnhW1 (Weak Enhancer 1)
State 17 - Yellow - EnhW2 (Weak Enhancer 2)
State 18 - Yellow - EnhAc (Enhancer Acetylation Only)
State 19 - Light Yellow - DNase (DNase only)
State 20 - Medium Aquamarine - ZNF/Rpts (ZNF genes & repeats)