NIA Gene Index Track Settings
NIA Mouse Gene Index   (All Genes and Gene Predictions tracks)

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Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
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Data last updated: 2009-09-03


This track displays alignments of the National Institute on Aging (NIA) Mouse Gene Index (mm9) to the mouse genome.


The index was assembled from Blat alignments of the mouse genome (mm9/July 2007).

See the NIA Mouse cDNA Project home page for more information.


This track was produced by Alexei A. Sharov, Dawood B. Dudekula and Minoru S. H. Ko at the NIA, National Institutes of Health. The research was supported by the NIA Intramural Research Program.


Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco G, Martin PR, Stagg CA, Bassey UC et al. Transcriptome analysis of mouse stem cells and early embryos. PLoS Biol. 2003 Dec;1(3):E74. PMID: 14691545; PMC: PMC300684

Sharov AA, Dudekula DB, Ko MS. Genome-wide assembly and analysis of alternative transcripts in mouse. Genome Res. 2005 May;15(5):748-54. PMID: 15867436; PMC: PMC1088304