There is a very high volume of traffic coming from your site (IP address 54.165.57.161) as of Sun Nov 28 13:59:26 2021 (California time). So that other users get a fair share of our bandwidth, we are putting in a delay of 10.2 seconds before we service your request. This delay will slowly decrease over a half hour as activity returns to normal. This high volume of traffic is likely due to program-driven rather than interactive access, or the submission of queries on a large number of sequences. If you are making large batch queries, please write to our genome@soe.ucsc.edu public mailing list and inquire about more efficient ways to access our data. If you are sharing an IP address with someone who is submitting large batch queries, we apologize for the inconvenience. To use the genome browser functionality from a Unix command line, please read <a href='http://genome.ucsc.edu/FAQ/FAQdownloads.html#download36'>our FAQ</a> on this topic. For further help o[...] WM + SDust Track Settings
WM + SDust Track Settings
 
Genomic Intervals Masked by WindowMasker + SDust   (All Variation and Repeats tracks)

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Data last updated at UCSC: 2020-07-28

Description

This track depicts masked sequence as determined by WindowMasker. The WindowMasker tool is included in the NCBI C++ toolkit. The source code for the entire toolkit is available from the NCBI FTP site.

Methods

To create this track, WindowMasker was run with the following parameters:

windowmasker -mk_counts true -input mm39.fa -output wm_counts
windowmasker -ustat wm_counts -sdust true -input mm39.fa -output repeats.bed
The repeats.bed (BED3) file was loaded into the "windowmaskerSdust" table for this track.

References

Morgulis A, Gertz EM, Schäffer AA, Agarwala R. WindowMasker: window-based masker for sequenced genomes. Bioinformatics. 2006 Jan 15;22(2):134-41. PMID: 16287941