MGI Phenotype Track Settings
 
Jackson Laboratory / Mouse Genome Informatics Phenotype   (All Phenotype and Allele tracks)

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Data last updated: 2011-06-22

Description

This track shows Mouse Genome Informatics (MGI) representative transcripts associated with Mammalian Phenotype Ontology Top-Level terms. The terms have been abbreviated for display as follows:

AbbreviationMPO Term
Adipose adipose tissue phenotype
Behavior behavior/neurological phenotype
Cardiovascular cardiovascular system phenotype
Cellular cellular phenotype
Craniofacial craniofacial phenotype
Digestive digestive/alimentary phenotype
Embryogenesis embryogenesis phenotype
Embryonic Lethal lethality-embryonic perinatal
Gland endocrine/exocrine gland phenotype
Growth Size growth/size phenotype
Hearing/Ear hearing/vestibular/ear phenotype
Hematopoietic hematopoietic system phenotype
Homeostasis homeostasis/metabolism phenotype
Immune immune system phenotype
Integument integument phenotype
Life Span life span-post-weaning/aging
Limbs and Tail limbs/digits/tail phenotype
Liver and Bile liver/biliary system phenotype
Mortality mortality/aging
Muscle muscle phenotype
Nervous System nervous system phenotype
Pigmentation pigmentation phenotype
Postnatal Lethal lethality-postnatal
Renal/Urinary renal/urinary system phenotype
Reproductive reproductive system phenotype
Respiratory respiratory system phenotype
Skeleton skeleton phenotype
Skin/Coat/Nails skin/coat/nails phenotype
Taste/Smell taste/olfaction phenotype
Touch touch/vibrissae phenotype
Tumorigenesis tumorigenesis
Vision/Eye vision/eye phenotype

Methods

The MGI database report MGI_PhenotypicAllele.rpt was parsed for markers and alleles that are associated with representative transcripts, and the Top-Level Mammalian Phenotype (MP) terms were captured. Note that these top-level terms can be associated with a marker multiple times (i.e. via multiple alleles).

Credits

Thanks to MGI at The Jackson Laboratory, and Bob Sinclair in particular, for providing these data.