ENCODE GEO Track Settings
 
DASHR v2.0 ENCODE_GEO_hg19 small RNA-seq raw sequencing coverage signal

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Select subtracks by strand and tissue: (help)
 All Strand Positive  Negative 
Tissue
A549 SRR446329 
A549 SRR446330 
A549 SRR446331 
A549 SRR446332 
AG04450 SRR446309 
AG04450 SRR446310 
BJ SRR446315 
BJ SRR446316 
CD14plus SRR527681 
CD14plus SRR527682 
CD20plus SRR527679 
CD20plus SRR527680 
CD34plus SRR527586 
GM12878 SRR446392 
GM12878 SRR446393 
H1-hESC SRR446307 
H1-hESC SRR446308 
H1-neurons SRR527651 
H1-neurons SRR527652 
HAoAF SRR527663 
HAoAF SRR527664 
HAoEC SRR527673 
HAoEC SRR527674 
HCH SRR527667 
HCH SRR527668 
HeLa-S3 SRR446319 
HeLa-S3 SRR446320 
HepG2 SRR446333 
HepG2 SRR446334 
HFDPC SRR527669 
HFDPC SRR527670 
HMEpC SRR527693 
hMSC-AT SRR527675 
hMSC-AT SRR527676 
hMSC-BM SRR527649 
hMSC-BM SRR527650 
hMSC-UC SRR527689 
hMSC-UC SRR527690 
HOB SRR527665 
HOB SRR527666 
HPC-PL SRR527691 
HPC-PL SRR527692 
HPIEpC SRR527696 
HPIEpC SRR527697 
HSaVEC SRR527694 
HSaVEC SRR527695 
HVMF SRR527659 
HVMF SRR527660 
HWP SRR527685 
HWP SRR527686 
IMR90 SRR527621 
IMR90 SRR527622 
K562 SRR446398 
K562 SRR446399 
MCF-7 SRR446323 
MCF-7 SRR446324 
MCF-7 SRR446325 
MCF-7 SRR446326 
NHDF SRR527661 
NHDF SRR527662 
NHEK SRR446337 
NHEK SRR446338 
NHEM-f-M2 SRR527683 
NHEM-f-M2 SRR527684 
NHEM-M2 SRR527687 
NHEM-M2 SRR527688 
SkMC SRR527671 
SkMC SRR527672 
SK-N-SH-RA SRR446303 
SK-N-SH-RA SRR446304 
SK-N-SH SRR527595 
SK-N-SH SRR527596 
Tissue
 All Strand Positive  Negative 
List subtracks: only selected/visible    all    ()
  Tissue↓1   Track Name↓2  
 SK-N-SH-RA SRR446303  SK-N-SH-RA_SRR446303 [+] signal   Schema 
 SK-N-SH-RA SRR446303  SK-N-SH-RA_SRR446303 [-] signal   Schema 
 SK-N-SH-RA SRR446304  SK-N-SH-RA_SRR446304 [+] signal   Schema 
 SK-N-SH-RA SRR446304  SK-N-SH-RA_SRR446304 [-] signal   Schema 
 H1-hESC SRR446307  H1-hESC_SRR446307 [+] signal   Schema 
 H1-hESC SRR446307  H1-hESC_SRR446307 [-] signal   Schema 
 H1-hESC SRR446308  H1-hESC_SRR446308 [+] signal   Schema 
 H1-hESC SRR446308  H1-hESC_SRR446308 [-] signal   Schema 
 AG04450 SRR446309  AG04450_SRR446309 [+] signal   Schema 
 AG04450 SRR446309  AG04450_SRR446309 [-] signal   Schema 
 AG04450 SRR446310  AG04450_SRR446310 [+] signal   Schema 
 AG04450 SRR446310  AG04450_SRR446310 [-] signal   Schema 
 BJ SRR446315  BJ_SRR446315 [+] signal   Schema 
 BJ SRR446315  BJ_SRR446315 [-] signal   Schema 
 BJ SRR446316  BJ_SRR446316 [+] signal   Schema 
 BJ SRR446316  BJ_SRR446316 [-] signal   Schema 
 HeLa-S3 SRR446319  HeLa-S3_SRR446319 [+] signal   Schema 
 HeLa-S3 SRR446319  HeLa-S3_SRR446319 [-] signal   Schema 
 HeLa-S3 SRR446320  HeLa-S3_SRR446320 [+] signal   Schema 
 HeLa-S3 SRR446320  HeLa-S3_SRR446320 [-] signal   Schema 
 MCF-7 SRR446323  MCF-7_SRR446323 [+] signal   Schema 
 MCF-7 SRR446323  MCF-7_SRR446323 [-] signal   Schema 
 MCF-7 SRR446324  MCF-7_SRR446324 [+] signal   Schema 
 MCF-7 SRR446324  MCF-7_SRR446324 [-] signal   Schema 
 MCF-7 SRR446325  MCF-7_SRR446325 [+] signal   Schema 
 MCF-7 SRR446325  MCF-7_SRR446325 [-] signal   Schema 
 MCF-7 SRR446326  MCF-7_SRR446326 [+] signal   Schema 
 MCF-7 SRR446326  MCF-7_SRR446326 [-] signal   Schema 
 A549 SRR446329  A549_SRR446329 [+] signal   Schema 
 A549 SRR446329  A549_SRR446329 [-] signal   Schema 
 A549 SRR446330  A549_SRR446330 [+] signal   Schema 
 A549 SRR446330  A549_SRR446330 [-] signal   Schema 
 A549 SRR446331  A549_SRR446331 [+] signal   Schema 
 A549 SRR446331  A549_SRR446331 [-] signal   Schema 
 A549 SRR446332  A549_SRR446332 [+] signal   Schema 
 A549 SRR446332  A549_SRR446332 [-] signal   Schema 
 HepG2 SRR446333  HepG2_SRR446333 [+] signal   Schema 
 HepG2 SRR446333  HepG2_SRR446333 [-] signal   Schema 
 HepG2 SRR446334  HepG2_SRR446334 [+] signal   Schema 
 HepG2 SRR446334  HepG2_SRR446334 [-] signal   Schema 
 NHEK SRR446337  NHEK_SRR446337 [+] signal   Schema 
 NHEK SRR446337  NHEK_SRR446337 [-] signal   Schema 
 NHEK SRR446338  NHEK_SRR446338 [+] signal   Schema 
 NHEK SRR446338  NHEK_SRR446338 [-] signal   Schema 
 GM12878 SRR446392  GM12878_SRR446392 [+] signal   Schema 
 GM12878 SRR446392  GM12878_SRR446392 [-] signal   Schema 
 GM12878 SRR446393  GM12878_SRR446393 [+] signal   Schema 
 GM12878 SRR446393  GM12878_SRR446393 [-] signal   Schema 
 K562 SRR446398  K562_SRR446398 [+] signal   Schema 
 K562 SRR446398  K562_SRR446398 [-] signal   Schema 
 K562 SRR446399  K562_SRR446399 [+] signal   Schema 
 K562 SRR446399  K562_SRR446399 [-] signal   Schema 
 CD34plus SRR527586  CD34plus_SRR527586 [+] signal   Schema 
 CD34plus SRR527586  CD34plus_SRR527586 [-] signal   Schema 
 SK-N-SH SRR527595  SK-N-SH_SRR527595 [+] signal   Schema 
 SK-N-SH SRR527595  SK-N-SH_SRR527595 [-] signal   Schema 
 SK-N-SH SRR527596  SK-N-SH_SRR527596 [+] signal   Schema 
 SK-N-SH SRR527596  SK-N-SH_SRR527596 [-] signal   Schema 
 IMR90 SRR527621  IMR90_SRR527621 [+] signal   Schema 
 IMR90 SRR527621  IMR90_SRR527621 [-] signal   Schema 
 IMR90 SRR527622  IMR90_SRR527622 [+] signal   Schema 
 IMR90 SRR527622  IMR90_SRR527622 [-] signal   Schema 
 hMSC-BM SRR527649  hMSC-BM_SRR527649 [+] signal   Schema 
 hMSC-BM SRR527649  hMSC-BM_SRR527649 [-] signal   Schema 
 hMSC-BM SRR527650  hMSC-BM_SRR527650 [+] signal   Schema 
 hMSC-BM SRR527650  hMSC-BM_SRR527650 [-] signal   Schema 
 H1-neurons SRR527651  H1-neurons_SRR527651 [+] signal   Schema 
 H1-neurons SRR527651  H1-neurons_SRR527651 [-] signal   Schema 
 H1-neurons SRR527652  H1-neurons_SRR527652 [+] signal   Schema 
 H1-neurons SRR527652  H1-neurons_SRR527652 [-] signal   Schema 
 HVMF SRR527659  HVMF_SRR527659 [+] signal   Schema 
 HVMF SRR527659  HVMF_SRR527659 [-] signal   Schema 
 HVMF SRR527660  HVMF_SRR527660 [+] signal   Schema 
 HVMF SRR527660  HVMF_SRR527660 [-] signal   Schema 
 NHDF SRR527661  NHDF_SRR527661 [+] signal   Schema 
 NHDF SRR527661  NHDF_SRR527661 [-] signal   Schema 
 NHDF SRR527662  NHDF_SRR527662 [+] signal   Schema 
 NHDF SRR527662  NHDF_SRR527662 [-] signal   Schema 
 HAoAF SRR527663  HAoAF_SRR527663 [+] signal   Schema 
 HAoAF SRR527663  HAoAF_SRR527663 [-] signal   Schema 
 HAoAF SRR527664  HAoAF_SRR527664 [+] signal   Schema 
 HAoAF SRR527664  HAoAF_SRR527664 [-] signal   Schema 
 HOB SRR527665  HOB_SRR527665 [+] signal   Schema 
 HOB SRR527665  HOB_SRR527665 [-] signal   Schema 
 HOB SRR527666  HOB_SRR527666 [+] signal   Schema 
 HOB SRR527666  HOB_SRR527666 [-] signal   Schema 
 HCH SRR527667  HCH_SRR527667 [+] signal   Schema 
 HCH SRR527667  HCH_SRR527667 [-] signal   Schema 
 HCH SRR527668  HCH_SRR527668 [+] signal   Schema 
 HCH SRR527668  HCH_SRR527668 [-] signal   Schema 
 HFDPC SRR527669  HFDPC_SRR527669 [+] signal   Schema 
 HFDPC SRR527669  HFDPC_SRR527669 [-] signal   Schema 
 HFDPC SRR527670  HFDPC_SRR527670 [+] signal   Schema 
 HFDPC SRR527670  HFDPC_SRR527670 [-] signal   Schema 
 SkMC SRR527671  SkMC_SRR527671 [+] signal   Schema 
 SkMC SRR527671  SkMC_SRR527671 [-] signal   Schema 
 SkMC SRR527672  SkMC_SRR527672 [+] signal   Schema 
 SkMC SRR527672  SkMC_SRR527672 [-] signal   Schema 
 HAoEC SRR527673  HAoEC_SRR527673 [+] signal   Schema 
 HAoEC SRR527673  HAoEC_SRR527673 [-] signal   Schema 
 HAoEC SRR527674  HAoEC_SRR527674 [+] signal   Schema 
 HAoEC SRR527674  HAoEC_SRR527674 [-] signal   Schema 
 hMSC-AT SRR527675  hMSC-AT_SRR527675 [+] signal   Schema 
 hMSC-AT SRR527675  hMSC-AT_SRR527675 [-] signal   Schema 
 hMSC-AT SRR527676  hMSC-AT_SRR527676 [+] signal   Schema 
 hMSC-AT SRR527676  hMSC-AT_SRR527676 [-] signal   Schema 
 CD20plus SRR527679  CD20plus_SRR527679 [+] signal   Schema 
 CD20plus SRR527679  CD20plus_SRR527679 [-] signal   Schema 
 CD20plus SRR527680  CD20plus_SRR527680 [+] signal   Schema 
 CD20plus SRR527680  CD20plus_SRR527680 [-] signal   Schema 
 CD14plus SRR527681  CD14plus_SRR527681 [+] signal   Schema 
 CD14plus SRR527681  CD14plus_SRR527681 [-] signal   Schema 
 CD14plus SRR527682  CD14plus_SRR527682 [+] signal   Schema 
 CD14plus SRR527682  CD14plus_SRR527682 [-] signal   Schema 
 NHEM-f-M2 SRR527683  NHEM-f-M2_SRR527683 [+] signal   Schema 
 NHEM-f-M2 SRR527683  NHEM-f-M2_SRR527683 [-] signal   Schema 
 NHEM-f-M2 SRR527684  NHEM-f-M2_SRR527684 [+] signal   Schema 
 NHEM-f-M2 SRR527684  NHEM-f-M2_SRR527684 [-] signal   Schema 
 HWP SRR527685  HWP_SRR527685 [+] signal   Schema 
 HWP SRR527685  HWP_SRR527685 [-] signal   Schema 
 HWP SRR527686  HWP_SRR527686 [+] signal   Schema 
 HWP SRR527686  HWP_SRR527686 [-] signal   Schema 
 NHEM-M2 SRR527687  NHEM-M2_SRR527687 [+] signal   Schema 
 NHEM-M2 SRR527687  NHEM-M2_SRR527687 [-] signal   Schema 
 NHEM-M2 SRR527688  NHEM-M2_SRR527688 [+] signal   Schema 
 NHEM-M2 SRR527688  NHEM-M2_SRR527688 [-] signal   Schema 
 hMSC-UC SRR527689  hMSC-UC_SRR527689 [+] signal   Schema 
 hMSC-UC SRR527689  hMSC-UC_SRR527689 [-] signal   Schema 
 hMSC-UC SRR527690  hMSC-UC_SRR527690 [+] signal   Schema 
 hMSC-UC SRR527690  hMSC-UC_SRR527690 [-] signal   Schema 
 HPC-PL SRR527691  HPC-PL_SRR527691 [+] signal   Schema 
 HPC-PL SRR527691  HPC-PL_SRR527691 [-] signal   Schema 
 HPC-PL SRR527692  HPC-PL_SRR527692 [+] signal   Schema 
 HPC-PL SRR527692  HPC-PL_SRR527692 [-] signal   Schema 
 HMEpC SRR527693  HMEpC_SRR527693 [+] signal   Schema 
 HMEpC SRR527693  HMEpC_SRR527693 [-] signal   Schema 
 HSaVEC SRR527694  HSaVEC_SRR527694 [+] signal   Schema 
 HSaVEC SRR527694  HSaVEC_SRR527694 [-] signal   Schema 
 HSaVEC SRR527695  HSaVEC_SRR527695 [+] signal   Schema 
 HSaVEC SRR527695  HSaVEC_SRR527695 [-] signal   Schema 
 HPIEpC SRR527696  HPIEpC_SRR527696 [+] signal   Schema 
 HPIEpC SRR527696  HPIEpC_SRR527696 [-] signal   Schema 
 HPIEpC SRR527697  HPIEpC_SRR527697 [+] signal   Schema 
 HPIEpC SRR527697  HPIEpC_SRR527697 [-] signal   Schema 
    

DASHR v2.0 ENCODE GEO hg19 small RNA signal tracks

This collection of tracks contains raw small RNA signal tracks (genome-wide raw read coverage) across human tissues and cell types included in ENCODE GEO data collection in DASHR v2.0 (see DASHR 2.0 data summary for information on data collections and included small RNA-seq experiments). Additional details are provided in (Kuksa PP et al, 2018) [1] and (Leung YY et al, 2016) [2].

DASHR 2.0. database

DASHR 2.0 database of small non-coding RNAs can be accessed at https://lisanwanglab.org/DASHRv2

References

  1. Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung. DASHR v2.0: database of small human noncoding RNAs in human tissues and cell types. Bioinformatics, 2018 doi.org/10.1093/bioinformatics/bty709
  2. Yuk Yee Leung*, Pavel P. Kuksa*, Alexandre Amlie-Wolf, Otto Valladares, Lyle H. Ungar, Sampath Kannan, Brian D. Gregory, and Li-San Wang. DASHR: database of small human noncoding RNAs. Nucl. Acids Res., 2016 (Database Issue) doi:10.1093/nar/gkv1188

Funding

National Institute of General Medical Sciences [R01-GM099962]; National Institute on Aging [U54-AG052427, U01-AG032984, U24-AG041689, UF1-AG047133], National Institute on Aging [T32-AG00255].