DASHR1 GEO Track Settings
 
DASHR v2.0 DASHR1_GEO_hg19 small RNA-seq raw sequencing coverage signal

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Select subtracks by strand and tissue: (help)
 All Strand Positive  Negative 
Tissue
adipose1 GSE45159 
bcellgerminalcenter1 GSE22898 
bcellmemory1 GSE22898 
bcellnaive1 GSE22898 
bcellplasma1 GSE22898 
bladder1 GSE31616 
brainog1 SRA012516 
brainpfc1 GSE43335 
brainpfc2 GSE48552 
braintgm1 GSE46131 
breast1 GSE39162 
cd4plustcell1 GSE59944 
colon1 GSE46622 
colon2 GSE43550 
colonascendens1 GSE46622 
colonrectum1 GSE46622 
heart1 ERP000773 
heart2 SRA012516 
kidney1 ERP000773 
kidney2 GSE24457 
liver1 ERP000773 
liver2 SRA012516 
liver3 GSE21279 
lung1 GSE33858 
lung2 SRA012516 
monocytemacrophage1 GSE59944 
muscle1 SRA012516 
pancreas1 SRA012516 
pancreaticbetacell1 GSE47720 
pancreaticislet1 GSE47720 
peripheralbmc1 GSE19812 
peripheralbmc2 GSE37710 
plasma1 GSE52981 
serum1 GSE53439 
serum2 GSE34891 
skin1 GSE31037 
skin2 GSE53600 
spermatozoa1 GSE21191 
spleen1 GSE49624 
testiculargerm1 GSE31616 
wholeblood1 GSE46579 
wholeislet1 GSE52314 
Tissue
 All Strand Positive  Negative 
List subtracks: only selected/visible    all    ()
  Tissue↓1   Track Name↓2  
 heart1 ERP000773  heart1_ERP000773 [+] signal   Schema 
 kidney1 ERP000773  kidney1_ERP000773 [+] signal   Schema 
 liver1 ERP000773  liver1_ERP000773 [+] signal   Schema 
 heart1 ERP000773  heart1_ERP000773 [-] signal   Schema 
 kidney1 ERP000773  kidney1_ERP000773 [-] signal   Schema 
 liver1 ERP000773  liver1_ERP000773 [-] signal   Schema 
 peripheralbmc1 GSE19812  peripheralbmc1_GSE19812 [+] signal   Schema 
 peripheralbmc1 GSE19812  peripheralbmc1_GSE19812 [-] signal   Schema 
 spermatozoa1 GSE21191  spermatozoa1_GSE21191 [+] signal   Schema 
 spermatozoa1 GSE21191  spermatozoa1_GSE21191 [-] signal   Schema 
 liver3 GSE21279  liver3_GSE21279 [+] signal   Schema 
 liver3 GSE21279  liver3_GSE21279 [-] signal   Schema 
 bcellgerminalcenter1 GSE22898  bcellgerminalcenter1_GSE22898 [+] signal   Schema 
 bcellmemory1 GSE22898  bcellmemory1_GSE22898 [+] signal   Schema 
 bcellnaive1 GSE22898  bcellnaive1_GSE22898 [+] signal   Schema 
 bcellplasma1 GSE22898  bcellplasma1_GSE22898 [+] signal   Schema 
 bcellgerminalcenter1 GSE22898  bcellgerminalcenter1_GSE22898 [-] signal   Schema 
 bcellmemory1 GSE22898  bcellmemory1_GSE22898 [-] signal   Schema 
 bcellnaive1 GSE22898  bcellnaive1_GSE22898 [-] signal   Schema 
 bcellplasma1 GSE22898  bcellplasma1_GSE22898 [-] signal   Schema 
 kidney2 GSE24457  kidney2_GSE24457 [+] signal   Schema 
 kidney2 GSE24457  kidney2_GSE24457 [-] signal   Schema 
 skin1 GSE31037  skin1_GSE31037 [+] signal   Schema 
 skin1 GSE31037  skin1_GSE31037 [-] signal   Schema 
 bladder1 GSE31616  bladder1_GSE31616 [+] signal   Schema 
 testiculargerm1 GSE31616  testiculargerm1_GSE31616 [+] signal   Schema 
 bladder1 GSE31616  bladder1_GSE31616 [-] signal   Schema 
 testiculargerm1 GSE31616  testiculargerm1_GSE31616 [-] signal   Schema 
 lung1 GSE33858  lung1_GSE33858 [+] signal   Schema 
 lung1 GSE33858  lung1_GSE33858 [-] signal   Schema 
 serum2 GSE34891  serum2_GSE34891 [+] signal   Schema 
 serum2 GSE34891  serum2_GSE34891 [-] signal   Schema 
 peripheralbmc2 GSE37710  peripheralbmc2_GSE37710 [+] signal   Schema 
 peripheralbmc2 GSE37710  peripheralbmc2_GSE37710 [-] signal   Schema 
 breast1 GSE39162  breast1_GSE39162 [+] signal   Schema 
 breast1 GSE39162  breast1_GSE39162 [-] signal   Schema 
 brainpfc1 GSE43335  brainpfc1_GSE43335 [+] signal   Schema 
 brainpfc1 GSE43335  brainpfc1_GSE43335 [-] signal   Schema 
 colon2 GSE43550  colon2_GSE43550 [+] signal   Schema 
 colon2 GSE43550  colon2_GSE43550 [-] signal   Schema 
 adipose1 GSE45159  adipose1_GSE45159 [+] signal   Schema 
 adipose1 GSE45159  adipose1_GSE45159 [-] signal   Schema 
 braintgm1 GSE46131  braintgm1_GSE46131 [+] signal   Schema 
 braintgm1 GSE46131  braintgm1_GSE46131 [-] signal   Schema 
 wholeblood1 GSE46579  wholeblood1_GSE46579 [+] signal   Schema 
 wholeblood1 GSE46579  wholeblood1_GSE46579 [-] signal   Schema 
 colon1 GSE46622  colon1_GSE46622 [+] signal   Schema 
 colonascendens1 GSE46622  colonascendens1_GSE46622 [+] signal   Schema 
 colonrectum1 GSE46622  colonrectum1_GSE46622 [+] signal   Schema 
 colon1 GSE46622  colon1_GSE46622 [-] signal   Schema 
 colonascendens1 GSE46622  colonascendens1_GSE46622 [-] signal   Schema 
 colonrectum1 GSE46622  colonrectum1_GSE46622 [-] signal   Schema 
 pancreaticbetacell1 GSE47720  pancreaticbetacell1_GSE47720 [+] signal   Schema 
 pancreaticislet1 GSE47720  pancreaticislet1_GSE47720 [+] signal   Schema 
 pancreaticbetacell1 GSE47720  pancreaticbetacell1_GSE47720 [-] signal   Schema 
 pancreaticislet1 GSE47720  pancreaticislet1_GSE47720 [-] signal   Schema 
 brainpfc2 GSE48552  brainpfc2_GSE48552 [+] signal   Schema 
 brainpfc2 GSE48552  brainpfc2_GSE48552 [-] signal   Schema 
 spleen1 GSE49624  spleen1_GSE49624 [+] signal   Schema 
 spleen1 GSE49624  spleen1_GSE49624 [-] signal   Schema 
 wholeislet1 GSE52314  wholeislet1_GSE52314 [+] signal   Schema 
 wholeislet1 GSE52314  wholeislet1_GSE52314 [-] signal   Schema 
 plasma1 GSE52981  plasma1_GSE52981 [+] signal   Schema 
 plasma1 GSE52981  plasma1_GSE52981 [-] signal   Schema 
 serum1 GSE53439  serum1_GSE53439 [+] signal   Schema 
 serum1 GSE53439  serum1_GSE53439 [-] signal   Schema 
 skin2 GSE53600  skin2_GSE53600 [+] signal   Schema 
 skin2 GSE53600  skin2_GSE53600 [-] signal   Schema 
 cd4plustcell1 GSE59944  cd4plustcell1_GSE59944 [+] signal   Schema 
 monocytemacrophage1 GSE59944  monocytemacrophage1_GSE59944 [+] signal   Schema 
 cd4plustcell1 GSE59944  cd4plustcell1_GSE59944 [-] signal   Schema 
 monocytemacrophage1 GSE59944  monocytemacrophage1_GSE59944 [-] signal   Schema 
 brainog1 SRA012516  brainog1_SRA012516 [+] signal   Schema 
 heart2 SRA012516  heart2_SRA012516 [+] signal   Schema 
 liver2 SRA012516  liver2_SRA012516 [+] signal   Schema 
 lung2 SRA012516  lung2_SRA012516 [+] signal   Schema 
 muscle1 SRA012516  muscle1_SRA012516 [+] signal   Schema 
 pancreas1 SRA012516  pancreas1_SRA012516 [+] signal   Schema 
 brainog1 SRA012516  brainog1_SRA012516 [-] signal   Schema 
 heart2 SRA012516  heart2_SRA012516 [-] signal   Schema 
 liver2 SRA012516  liver2_SRA012516 [-] signal   Schema 
 lung2 SRA012516  lung2_SRA012516 [-] signal   Schema 
 muscle1 SRA012516  muscle1_SRA012516 [-] signal   Schema 
 pancreas1 SRA012516  pancreas1_SRA012516 [-] signal   Schema 
    

DASHR v2.0 DASHR1 GEO hg19 small RNA signal tracks

This collection of tracks contains raw small RNA signal tracks (genome-wide raw read coverage) across human tissues and cell types included in DASHR1 GEO data collection in DASHR v2.0 (see DASHR 2.0 data summary for information on data collections and included small RNA-seq experiments). Additional details are provided in (Kuksa PP et al, 2018) [1] and (Leung YY et al, 2016) [2].

DASHR 2.0. database

DASHR 2.0 database of small non-coding RNAs can be accessed at https://lisanwanglab.org/DASHRv2

References

  1. Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung. DASHR v2.0: database of small human noncoding RNAs in human tissues and cell types. Bioinformatics, 2018 doi.org/10.1093/bioinformatics/bty709
  2. Yuk Yee Leung*, Pavel P. Kuksa*, Alexandre Amlie-Wolf, Otto Valladares, Lyle H. Ungar, Sampath Kannan, Brian D. Gregory, and Li-San Wang. DASHR: database of small human noncoding RNAs. Nucl. Acids Res., 2016 (Database Issue) doi:10.1093/nar/gkv1188

Funding

National Institute of General Medical Sciences [R01-GM099962]; National Institute on Aging [U54-AG052427, U01-AG032984, U24-AG041689, UF1-AG047133], National Institute on Aging [T32-AG00255].