UCSC Genome Browser on Human Feb. 2009 (GRCh37/hg19) Assembly
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chr2:86,332,633-86,932,932 600,300 bp.
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-   Custom Tracks
22rv1_CTCF
22rv1_Enhancer
22RV1_INPUT_comb Total Tags = 8.00e+07, normalized to 1.00e+07
22Rv1_loops
22rv1_Promoter
22rv1_RNAseq_rep1.hg19 Total Tags = 1.48e+07, normalized to 1.00e+07
22rv1_RNAseq_rep2.hg19 Total Tags = 1.71e+07, normalized to 1.00e+07
22rv1_RNAseq_rep3.hg19 Total Tags = 1.96e+07, normalized to 1.00e+07
22Rv1_TAD
C42B_CTCF
C42B_CTCF_ENCSR460LGH Total Tags = 8.00e+07, normalized to 1.00e+07
C42B_Enhancer
C42B_FOXA1_Vehicle_GSM984391 Total Tags = 2.00e+07, normalized to 1.00e+07
C42B_GSM984391_FOXA1_Vehicle
C42B_H3K27Ac_ENCSR279KIX Total Tags = 8.00e+07, normalized to 1.00e+07
C42B_H3K27me3_USC1345 Total Tags = 4.00e+07, normalized to 1.00e+07
C42B_H3K27me3_USC1353 Total Tags = 4.00e+07, normalized to 1.00e+07
C42B_H3K36me3_USC1356 Total Tags = 4.00e+07, normalized to 1.00e+07
C42B_H3K36me3_USC1357 Total Tags = 4.00e+07, normalized to 1.00e+07
C42B_H3K4me3_USC1330 Total Tags = 8.00e+07, normalized to 1.00e+07
C42B_H3K9me3_USC1343 Total Tags = 4.00e+07, normalized to 1.00e+07
C42B_H3K9me3_USC1349 Total Tags = 4.00e+07, normalized to 1.00e+07
C42B_H3K9me3_USC1434 Total Tags = 4.00e+07, normalized to 1.00e+07
C42B_INPUT_comb Total Tags = 8.00e+07, normalized to 1.00e+07
C42B_loops
C42B_PolII_USC1310 Total Tags = 8.00e+07, normalized to 1.00e+07
C42B_PolII_USC1329 Total Tags = 8.00e+07, normalized to 1.00e+07
C42B_PolIIe_USC1328 Total Tags = 8.00e+07, normalized to 1.00e+07
C42B_Promoter
C42B_RNAseq_rep1.hg19 Total Tags = 2.73e+07, normalized to 1.00e+07
C42B_RNAseq_rep2.hg19 Total Tags = 2.18e+07, normalized to 1.00e+07
C42B_RNAseq_rep3.hg19 Total Tags = 2.32e+07, normalized to 1.00e+07
C42B_TAD
Enhancer_for_CRISPR
FOXA1 peak intersectTo Enhancer C42B
GM12878 TAD
GM12878 TAD TopDom
GM12878_loops
gRNA_Hi-C_Jiani0912
gRNA_PCaHiC_Jenevieve
GSE98730_LNCaP_WA
GSE98730_PrEC_WA
HEK293T_ZNF711_USC1291 Total Tags = 8.00e+07, normalized to 1.00e+07
MCF7_ZNF711_USC1287 Total Tags = 8.00e+07, normalized to 1.00e+07
PCa22rv1_CTCF_ENCSR857PBV Total Tags = 8.00e+07, normalized to 1.00e+07
PCa22Rv1_H3K27Ac_ENCSR391NPE Total Tags = 8.00e+07, normalized to 1.00e+07
PCa22rv1_H3K27me3_USC1346 Total Tags = 4.00e+07, normalized to 1.00e+07
PCa22rv1_H3K9me3_USC1344 Total Tags = 4.00e+07, normalized to 1.00e+07
Primers_20171128
Primers_20171218
Primers_Andrew_used
RWPE1_CTCF
RWPE1_CTCF_ENCSR303GFI Total Tags = 8.00e+07, normalized to 1.00e+07
RWPE1_DNase_GSM1541008 Total Tags = 8.00e+07, normalized to 1.00e+07
RWPE1_Enhancer
RWPE1_H3K27Ac_ENCSR203KEU Total Tags = 8.00e+07, normalized to 1.00e+07
RWPE1_H3K27ac_GSM1541009 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K27ac_GSM1541010 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K27me3_GSM1541011 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K27me3_GSM1541012 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K27me3_USC1355 Total Tags = 4.00e+07, normalized to 1.00e+07
RWPE1_H3K36me3_GSM1541013 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K36me3_GSM1541014 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K4me1_GSM1541015 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K4me1_GSM1541016 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K4me3_GSM1541017 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_H3K4me3_GSM1541018 Total Tags = 1.00e+07, normalized to 1.00e+07
RWPE1_INPUT_comb Total Tags = 8.00e+07, normalized to 1.00e+07
RWPE1_Input_GSM1541107 Total Tags = 8.00e+07, normalized to 1.00e+07
RWPE1_loops
RWPE1_Promoter
RWPE1_RNAseq_rep1.hg19 Total Tags = 2.39e+07, normalized to 1.00e+07
RWPE1_RNAseq_rep2.hg19 Total Tags = 2.61e+07, normalized to 1.00e+07
RWPE1_RNAseq_rep3.hg19 Total Tags = 2.45e+07, normalized to 1.00e+07
RWPE1_TAD
tb_ct_CTCFmotifsredforwardbluereverse_7645
USC1040_ZFX_HCT116_RepA
USC1046_INPUT_HCT116_RepA
USC1048_ZFX_HEK293T_RepA_CGATGT
USC1049_ZFX_C42B_RepB_TGACCA
USC1050_ZFX_MCF7_RepB_GCCAAT
USC1051_INPUT_HEK293T_RepA_CGATGT
USC1056_ZFX_HEK293T_RepB
USC1063_INPUT_HEK293T_RepB_GATCAG
USC1343USC1349_H3K9me3_C42B Total Tags = 4.00e+07, normalized to 1.00e+07
USC1344USC1350_H3K9me3_PCa22rv1 Total Tags = 4.00e+07, normalized to 1.00e+07
USC1345USC1353_H3K27me3_C42B Total Tags = 4.00e+07, normalized to 1.00e+07
USC1346USC1358_H3K27me3_PCa22rv1 Total Tags = 4.00e+07, normalized to 1.00e+07
USC1351USC1352_H3K9me3_RWPE1 Total Tags = 4.00e+07, normalized to 1.00e+07
USC1354USC1355_H3K27me3_RWPE1 Total Tags = 4.00e+07, normalized to 1.00e+07
USC1356USC1357_H3K36me3_C42B Total Tags = 4.00e+07, normalized to 1.00e+07
USC1359USC1360_H3K36me3_PCa22rv1 Total Tags = 4.00e+07, normalized to 1.00e+07
USC1361USC1362_H3K36me3_RWPE1 Total Tags = 4.00e+07, normalized to 1.00e+07
USC1392_H3K9me3_PrEC Total Tags = 4.00e+07, normalized to 1.00e+07
USC1393_H3K27me3_PrEC Total Tags = 4.00e+07, normalized to 1.00e+07
USC1394_H3K36me3_PrEC Total Tags = 4.00e+07, normalized to 1.00e+07
USC987_INPUT_HCT116_RepB
USC990_ZFX_HCT116_RepB
-   Hub (Repli-seq ENCSR000CXJ)
Repli-seq of GM12878 ENCSR000CXJ
-   Hub (search: Repli-seq)
ENCODE Misc.
-   Hub (Histone ChIP-seq ENCSR431UUY)
H3K27me3 histone of IMR-90 ENCSR431UUY
-   Hub (Histone ChIP-seq ENCSR279KIX)
H3K27ac histone of C4-2B ENCSR279KIX
-   Hub (Repli-seq ENCSR703BOK)
Repli-seq of GM12878 ENCSR703BOK
-   Hub (Repli-seq ENCSR257NBQ)
Repli-seq of GM12878 ENCSR257NBQ
-   Hub (Repli-seq ENCSR214GWY)
Repli-seq of GM12878 ENCSR214GWY
-   Hub (Histone ChIP-seq ENCSR437ORF)
H3K36me3 histone of IMR-90 ENCSR437ORF
-   Hub (Repli-seq ENCSR849LEC)
Repli-seq of GM12878 ENCSR849LEC
-   Hub (Repli-seq ENCSR025TZP)
Repli-seq of GM12878 ENCSR025TZP
-   Hub (TF ChIP-seq ENCSR460LGH)
CTCF TF ChIP-seq of C4-2B ENCSR460LGH
-   Track Collections
New Collection
New Collection (1)
-   Hub (Histone ChIP-seq ENCSR000DRX)
H3K27me3 histone of GM12878 ENCSR000DRX
-   Hub (Histone ChIP-seq ENCSR000DRW)
H3K36me3 histone of GM12878 ENCSR000DRW
-   Mapping and Sequencing
Base Position
p13 updated Fix Patches
p13 updated Alt Haplotypes
Assembly
BAC End Pairs
BU ORChID
Chromosome Band
deCODE Recomb
ENCODE Pilot
Exome Probesets
FISH Clones
Fosmid End Pairs
Gap
GC Percent
GRC Incident
GRC Map Contigs
Hg18 Diff
Hg38 Diff
Hi Seq Depth
INSDC
liftOver & ReMap
LRG Regions
Map Contigs
Mappability
Problematic Regions
Recomb Rate
RefSeq Acc
Restr Enzymes
Short Match
STS Markers
-   Genes and Gene Predictions
UCSC Genes
NCBI RefSeq
CCDS
CRISPR Targets
Ensembl Genes
EvoFold
Exoniphy
GENCODE
H-Inv 7.0
IKMC Genes Mapped
lincRNAs
LRG Transcripts
MGC Genes
Old UCSC Genes
ORFeome Clones
Other RefSeq
Pfam in UCSC Gene
new Prediction Archive
Retroposed Genes
sno/miRNA
TransMap V5
tRNA Genes
UCSC Alt Events
UniProt
Vega Genes
Yale Pseudo60
-   Phenotype and Literature
Publications
CADD
ClinGen
deprecated ClinGen CNVs
ClinVar Variants
Coriell CNVs
COSMIC Regions
Decipher CNVs
DECIPHER SNVs
Development Delay
GAD View
Gene Interactions
GeneReviews
GWAS Catalog
Haploinsufficiency
HGMD Variants
Lens Patents
LOVD Variants
MGI Mouse QTL
OMIM Alleles
OMIM Cyto Loci
OMIM Genes
new Orphanet
REVEL Scores
RGD Human QTL
RGD Rat QTL
SNPedia
UniProt Variants
Variants in Papers
Web Sequences
-   COVID-19
COVID GWAS v4
COVID GWAS v3
Rare Harmful Vars
-   mRNA and EST
CGAP SAGE
Gene Bounds
H-Inv
Human ESTs
Human mRNAs
Human RNA Editing
Other ESTs
Other mRNAs
Poly(A)
PolyA-Seq
SIB Alt-Splicing
Spliced ESTs
UniGene
-   Expression
GTEx Gene V8
Allen Brain
Burge RNA-seq
CSHL Small RNA-seq
ENC Exon Array
ENC ProtGeno
ENC RNA-seq
EPDnew Promoters
new Affy Archive
GIS RNA PET
GNF Atlas 2
GTEx Gene
GTEx Transcript
GWIPS-viz Riboseq
Illumina WG-6
PeptideAtlas
qPCR Primers
RIKEN CAGE Loc
Sestan Brain
-   Regulation
ENCODE Regulation
CD34 DnaseI
CpG Islands
ENC Chromatin
ENC DNA Methyl
ENC DNase/FAIRE
ENC Histone
ENC RNA Binding
ENC TF Binding
FSU Repli-chip
GeneHancer
Genome Segments
GTEx Combined eQTL
GTEx Tissue eQTL
new JASPAR Transcription Factors
NKI Nuc Lamina
ORegAnno
Rao 2014 Hi-C
Stanf Nucleosome
SUNY SwitchGear
SwitchGear TSS
TFBS Conserved
TS miRNA Targets
UCSF Brain Methyl
UMMS Brain Hist
UW Repli-seq
Vista Enhancers
-   Comparative Genomics
Conservation
Cons 46-Way
Cons Indels MmCf
Evo Cpg
GERP
phastBias gBGC
Primate Chain/Net
Placental Chain/Net
Vertebrate Chain/Net
+   Neandertal Assembly and Analysis
+   Denisova Assembly and Analysis
-   Variation
dbSNP 153
new 1000G Archive
dbSNP Archive
dbVar Common Struct Var
DGV Struct Var
EVS Variants
ExAC
Genome In a Bottle
Genome Variants
GIS DNA PET
gnomAD
HAIB Genotype
HapMap SNPs
HGDP Allele Freq
Platinum Genomes
SNP/CNV Arrays
-   Repeats
RepeatMasker
Interrupted Rpts
Microsatellite
NumtS Sequence
Segmental Dups
Self Chain
Simple Repeats
WM + SDust