UCSC Genome Browser on D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) Assembly
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chr2R:10,670,360-10,718,153 47,794 bp.
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Bulk ATAC DGRP regions
Color - Standarized R2G Coor+Genie3 50Kb
Ctx_regions
Janelia lines
Optix-GFPVSRest_logFC1
RedFly (BED)
Score - Standarized R2G Coor+Genie3 50Kb
So ChIPseq peaks
-   Eye-Antennal Disc hub (Bravo et al, 2019) @ aertslab.org
10X topics
Aggregate scATAC - Cell sorting
ATAC DGRP - Eye disc
ATAC_Aggr_EAD_Clusters
Bulk ATAC - Cell sorting
ENCODE_ChIP-seq
ENCODE_Normalized_ChIP-seq
Grh_ChIP-seq
Predictive_Accessibility
RNA_Aggr_EAD_Clusters
scRNA_GeneExpression_gene
scRNA_GeneExpression_transcript
so_ChIP-seq
TF_perturbations
-   Mapping and Sequencing
Base Position
Chromosome Band
Assembly
Gap
GC Percent
INSDC
RefSeq Acc
Restr Enzymes
Short Match
-   Genes and Gene Predictions
NCBI RefSeq
Other RefSeq
AUGUSTUS
CRISPR...
updated Ensembl Genes
Genscan Genes
Pfam in RefSeq
updated UniProt
-   mRNA and EST
D. melanogaster mRNAs
Spliced ESTs
D. melanogaster ESTs
Other mRNAs
-   Expression and Regulation
CpG Islands...
ORegAnno
-   Comparative Genomics
Conservation
Cons 124 Insects
Insects Chain/Net
-   Variation and Repeats
Interrupted Rpts
Microsatellite
Simple Repeats
UniProt Variants
WM + SDust
RepeatMasker