UCSC Genome Browser on Ambystoma mexicanum Axolotl assembly V6, 2020 (AmexG.v6)
move zoom in zoom out
chr1p:1-1,417,697,632 1,417,697,632 bp.
move start
  Click on a feature for details. Click+shift+drag to zoom in. Click side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position. Press "?" for keyboard shortcuts.   move end
  
Use drop-down controls below and press refresh to alter tracks displayed.
Tracks with lots of items will automatically be displayed in more compact modes.
-   Gene Models
reduced_gm
filt_gm
full_gm
-   Track Collections
Normalized coverage
Homozygous
Heterozygous
A.tig. like at homozygous
A.tig. like at heterozygous
-   Transcriptomes
Nowoshilow_trans
V3_sal-site_trans
V4_sal-site_trans
Bryant_trans
Jiang_Embryo_trans
SingleCell_trans
-   Mapping and Sequencing
Base Position
Restr Enzymes
Short Match
-   Coverage tracks (short read data)
cov_A.mac
cov_A.tig
cov_AGSC_AM
cov_dd
-   SNPs density per kb
het_AGSC_AM
het_Atig
het_dd
homoz_AGSC_AM
homoz_Atig
homoz_dd
tig_as_AGSC_at_AGSC_het
tig_as_AGSC_at_AGSC_homoz
tig_as_dd_at_AGSC_het
tig_as_dd_at_AGSC_homoz
-   Sequence Variants (SNPs and small indels)
A.mac_homSNPs
A.tig_SNPs
AGSC_SNPs
dd_SNPs
-   Nowoshilov_Multitissue_PRJNA378982
brain
cell_culture_new_batch
cell_culture_old_batch
forelimb_blastema_15DPI
forelimb_blastema_9DPI
head
heart
injured_spinal_cord(Rep1)
injured_spinal_cord(Rep2)
intact_spinal_cord
islets
limb_bud(St44)
liver
lung
ovaries
spleen
tail_blastema
tail_bud(5_days
testes
whole_embryo(St10)
whole_embryo(St19)
-   Bryant_Multitissue_PRJNA300706
blood_vessel(Rep1)
blood_vessel(Rep2)
blood_vessel(Rep3)
bone(Rep1)
bone(Rep2)
bone(Rep3)
distal_blastema(Rep1)
distal_blastema(Rep2)
elbow(Rep1)
elbow(Rep2)
forearm(Rep1)
forearm(Rep2)
forearm_cartilage(Rep1)
forearm_cartilage(Rep2)
forearm_cartilage(Rep3)
gill_filament(Rep1)
hand(Rep1)
hand(Rep2)
hand(Rep3)
heart(Rep1)
heart(Rep2)
heart(Rep3)
ovaries(Rep1)
ovaries(Rep2)
ovaries(Rep3)
proximal_blastema(Rep1)
proximal_blastema(Rep2)
skeletal_muscle(Rep1)
skeletal_muscle(Rep2)
skeletal_muscle(Rep3)
skeletal_muscle(Rep4)
testes(Rep1)
testes(Rep2)
testes(Rep3)
testes(Rep4)
upper_arm(Rep1)
upper_arm(Rep2)
upper_arm(Rep3)
wrist_cartilage(Rep1)
wrist_cartilage(Rep2)
wrist_cartilage(Rep3)
-   Dwaraka_Regeneration_PRJNA480225(and unpublished)
0DPA_A.and(Rep1)
0DPA_A.and(Rep2)
0DPA_A.and(Rep3)
0DPA_A.mac(Rep1)
0DPA_A.mac(Rep2)
0DPA_A.mac(Rep3)
0DPA_A.mex(Rep1)
0DPA_A.mex(Rep2)
0DPA_A.mex(Rep3)
1DPA_A.and(Rep1)
1DPA_A.and(Rep2)
1DPA_A.and(Rep3)
1DPA_A.mac(Rep1)
1DPA_A.mac(Rep2)
1DPA_A.mac(Rep3)
1DPA_A.mex(Rep1)
1DPA_A.mex(Rep2)
1DPA_A.mexi(Rep3)
2DPA_A.mex(Rep1)
2DPA_A.mex(Rep2)
2DPA_A.mex(Rep3)
3DPA_A.mex(Rep1)
3DPA_A.mex(Rep2)
3DPA_A.mex(Rep3)
4DPA_A.mex(Rep1)
4DPA_A.mex(Rep2)
4DPA_A.mex(Rep3)
5DPA_A.mex(Rep1)
5DPA_A.mex(Rep2)
5DPA_A.mex(Rep3)
-   Dwaraka_Embryo_Tail_Regeneration (unpublished)
0HPA_embryo_tail(Rep1)
0HPA_embryo_tail(Rep2)
0HPA_embryo_tail(Rep3)
12HPA_embryo_tail(Rep1)
12HPA_embryo_tail(Rep2)
12HPA_embryo_tail(Rep3)
24HPA_embryo_tail(Rep1)
24HPA_embryo_tail(Rep2)
24HPA_embryo_tail(Rep3)
48HPA_embryo_tail(Rep1)
48HPA_embryo_tail(Rep2)
48HPA_embryo_tail(Rep3)
6HPA_embryo_tail(Rep1)
6HPA_embryo_tail(Rep3)
-   Caballero-PĂ©rez_Multitissue_PRJNA354434
front_leg
gills
heart
liver
rear_leg
tail
-   Wu_Regeneration_PRJNA186654
Day14_blastema(Rep1)
Day14_blastema(Rep2)
-   Kerdivel_Metamorphosis_PRJNA306100
Tailfin
Tailfin_T3_10nM
-   Bryant_Repeat_Regen_PRJNA400170
Control_Limb_stump(Rep1)
Control_Limb_stump(Rep2)
Control_Limb_stump(Rep3)
Control_Limb_stump(Rep4)
Multi-amputation_Limb_stump(Rep1)
Multi-amputation_Limb_stump(Rep2)
Multi-amputation_Limb_stump(Rep3)
Multi-amputation_Limb_stump(Rep4)
-   Natarajan_Heart_Regen_PRJNA427437
apical_resection_12HPI(Rep1)
apical_resection_12HPI(Rep2)
apical_resection_12HPI(Rep3)
apical_resection_24HPI(Rep1)
apical_resection_24HPI(Rep2)
apical_resection_24HPI(Rep3)
apical_resection_48HPI(Rep1)
apical_resection_48HPI(Rep2)
apical_resection_48HPI(Rep3)
sham_surgery_12HPI(Rep1)
sham_surgery_12HPI(Rep2)
sham_surgery_12HPI(Rep3)
sham_surgery_24HPI(Rep1)
sham_surgery_24HPI(Rep2)
sham_surgery_24HPI(Rep3)
sham_surgery_48HPI(Rep1)
sham_surgery_48HPI(Rep2)
sham_surgery_48HPI(Rep3)
-   Echeverri: Regulation of stem cell identity by miR-200a during sp. cord regen, PRJNA312389
4dpi_Cntl_1_S4
4dpi_Cntl_5_S5
4dpi_Cntl_6_S6
4dpi_Inhib_5_S10
4dpi_Inhib_6_S11
4dpi_Inhib_7_S12
Cntl_Uninj_1_S1
Cntl_Uninj_5_S3
Cntl_Uninj_S2
Uninj_Inhib_5_S7
Uninj_Inhib_6_S8
Uninj_Inhib_7_S9
-   Sabin: Glial cell response spinal cord regen, PRJNA312389
4dpi_Cntl_1_S4
4dpi_Cntl_5_S5
4dpi_Cntl_6_S6
Cntl_Uninj_1_S1
Uninj_Cntl_5_S3
Uninj_RNA_S2
-   Jiang_Embryos_PRJNA312389
st1(Rep1)
st1(Rep2)
st1(Rep3)
st1(Rep4)
st10(Rep1)
st10(Rep2)
st10(Rep3)
st11(Rep1)
st11(Rep2)
st12(Rep1)
st12(Rep2)
st12(Rep3)
st14(Rep1)
st14(Rep2)
st14(Rep3)
st16(Rep1)
st16(Rep2)
st16(Rep3)
st19(Rep1)
st19(Rep2)
st19(Rep3)
st2(Rep1)
st2(Rep2)
st2(Rep3)
st2(Rep4)
st2(Rep5)
st2(Rep6)
st24(Rep1)
st24(Rep2)
st24(Rep3)
st3(Rep1)
st3(Rep2)
st3(Rep3)
st4(Rep1)
st4(Rep2)
st4(Rep3)
st40(Rep1)
st40(Rep2)
st40(Rep3)
st5(Rep1)
st5(Rep2)
st5(Rep3)
st6(Rep1)
st6(Rep2)
st6(Rep3)
st7(Rep1)
st7(Rep2)
st7(Rep3)
st8(Rep1)
st8(Rep2)
st8(Rep3)
st9(Rep1)
st9(Rep2)
st9(Rep3)
-   Day zero embryo tail amputation (unpublished)
H3K27ac_ChIPseqdepth
H3K9ac_ChIPseqdepth
RNA_PolII_ChIPseqdepth
-   Methylation tracks (unpublished)
0hr_WGBS
12hr_WGBS
24hr_WGBS
6hr_WGBS
-   ATACseq PRJNA682840
0hpa_forelimb_limb_bud_rep1
0hpa_forelimb_limb_bud_rep2
0hpa_forelimb_limb_bud_rep3
14dpa_forelimb_limb_bud_rep1
14dpa_forelimb_limb_bud_rep2
14dpa_forelimb_limb_bud_rep3
1dpa_forelimb_limb_bud_rep1
1dpa_forelimb_limb_bud_rep2
1dpa_forelimb_limb_bud_rep3
22dpa_forelimb_limb_bud_rep1
22dpa_forelimb_limb_bud_rep2
22dpa_forelimb_limb_bud_rep3
33dpa_forelimb_limb_bud_rep1
33dpa_forelimb_limb_bud_rep2
33dpa_forelimb_limb_bud_rep3
3dpa_forelimb_limb_bud_rep1
3dpa_forelimb_limb_bud_rep2
3dpa_forelimb_limb_bud_rep3
3hpa_forelimb_limb_bud_rep1
3hpa_forelimb_limb_bud_rep2
3hpa_forelimb_limb_bud_rep3
7dpa_forelimb_limb_bud_rep1
7dpa_forelimb_limb_bud_rep2
7dpa_forelimb_limb_bud_rep3
-   other
Gaps
GC_1K