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Configure Tracks on UCSC Genome Browser: C. elegans May 2008 (WS190/ce6)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   tracks for doRiNA2    
     CLIPSeq_alg1_Zisoulis2010_ce6     alg1 CLIP-Seq (Zisoulis 2010)
Grosswendt-miRNA:targets Grosswendt-miRNA:targets
     grosswendt_mirna_ce6     Grosswendt-miRNA:targets
     PARCLIP_GLD1_Jungkamp2011_ce6     GLD1 PAR-CLIP (Jungkamp 2011)
PicTar2-3species-Cons.-miRNA:targets PicTar2-3species-Cons.-miRNA:targets
     pictar_mirna_3speciesCons_ce6     PicTar2-3species-Cons.-miRNA:targets
PicTar2-5species-Cons.-miRNA:targets PicTar2-5species-Cons.-miRNA:targets
     pictar_mirna_5speciesCons_ce6     PicTar2-5species-Cons.-miRNA:targets
     RIP-CHIP_rnp8_Kim2010a_ce6     rnp8 RIP-CHIP (Kim 2010)
     RIP-CHIP_gld2_Kim2010b_ce6     gld2 RIP-CHIP (Kim 2010)
     RIP-CHIP_gld1_Wright2011_ce6     gld1 RIP-CHIP (Wright 2011)
     RIP-CHIP_fbf-1_Kershner2010_ce6     fbf-1 RIP-CHIP (Kershner 2010)
TargetScan-Cons.-miRNA:targets TargetScan-Cons.-miRNA:targets
     TargetScanCons_mirna_ce6     TargetScan-Cons.-miRNA:targets
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
Nucleosome Nucleosome predictions from SOLiD Core Alignments
MNase Coverage Micrococcal nuclease control coverage
NSome Coverage Coverage of nucleosome predictions from SOLiD Core Alignments
Adj NSome Covrg Adjusted nucleosome coverage (25bp)
NSome Stringency Nucleosome Positioning Stringency from SOLiD Core Alignments
-   Genes and Gene Predictions    
WormBase Genes WormBase Gene Annotations
WormBase RNAs WormBase RNA Annotations
WormBase PseudoGenes WormBase PseudoGene Annotations
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
updated Ensembl Genes Ensembl Genes
Other RefSeq Non-C. elegans RefSeq Genes
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
-   Literature    
Publications Publications: Sequences in Scientific Articles
-   mRNA and EST    
Spliced ESTs C. elegans ESTs That Have Been Spliced
C. elegans ESTs C. elegans ESTs Including Unspliced
C. elegans mRNAs C. elegans mRNAs from GenBank
Other mRNAs Non-C. elegans mRNAs from GenBank
-   Expression and Regulation    
ALG-1 binding ALG-1 Argonaute binding sites
-   Comparative Genomics    
Conservation Multiz Alignment & Conservation (6 nematodes)
P. pacificus Chain P. pacificus (Feb. 2007 (WUGSC 5.0/priPac1)) Chained Alignments
P. pacificus Net P. pacificus (Feb. 2007 (WUGSC 5.0/priPac1)) Alignment Net
C. japonica Chain C. japonica (Mar. 2008 (WUGSC 3.0.2/caeJap1)) Chained Alignments
C. japonica Net C. japonica (Mar. 2008 (WUGSC 3.0.2/caeJap1)) Alignment Net
C. brenneri Chain C. brenneri (Feb. 2008 (WUGSC 6.0.1/caePb2)) Chained Alignments
C. brenneri Net C. brenneri (Feb. 2008 (WUGSC 6.0.1/caePb2)) Alignment Net
C. briggsae Chain C. briggsae (Jan. 2007 (WUGSC 1.0/cb3)) Chained Alignments
C. briggsae Net C. briggsae (Jan. 2007 (WUGSC 1.0/cb3)) Alignment Net
C. remanei Chain C. remanei (May 2007 (WUGSC 15.0.1/caeRem3)) Chained Alignments
C. remanei Net C. remanei (May 2007 (WUGSC 15.0.1/caeRem3)) Alignment Net
-   Variation and Repeats    
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
RepeatMasker Repeating Elements by RepeatMasker
25mers 25mers repeat annotation
Self Chain C. elegans Chained Self Alignments