UCSC Genome Browser on SARS-CoV-2 Jan. 2020/NC_045512.2 Assembly (wuhCor1)
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NC_045512v2:1-29,903 29,903 bp.   Quick start guide
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-   ORF Predictions
Predic ORFs
Calu3 7hpi
Vero6 5hpi
Vero6 24hpi
-   Mapping and Sequencing
Base Position
Kim IVT Cov
ARTIC Primers V3
ARTIC Primers V4
RAPID/Midnight Primers
Swift Primers
Crowd-Sourced Data
Addgene Plasmids
CRISPR Detection
GC Percent
updated Problematic Sites
RefSeq Acc
Restr Enzymes
RT-PCR Primers
Short Match
-   Genes and Gene Predictions
NCBI Genes
NCBI Proteins
Transcriptome Kim
Protein Interact.
Weizman ORFs
PDB Structures
PDB Ligand Contacts
Genscan Genes
Nextstrain Genes
PhyloCSF Genes
-   UniProt Protein Annotations
Precurs. Proteins
Protein Alignments
Protein Products
Signal Peptides
Transmem. Domains
Disulf. Bonds
Protein Domains
Other Annot.
Protease Cleavage
-   Immunology
RBD Mut Bind
RBD Mut Expr
Antib Pept Array
S Antib Pept Array
Antibody Escape
CD8 Escape Muts
CD8 RosettaMHC
IEDB Predictions
Poran HLA I
Poran HLA II
T-React. Epitopes
Validated epitopes from IEDB
-   mRNA and EST
SHAPE Struct Pyle
icSHAPE RNA Struct
Rangan RNA
-   Expression and Regulation
Kim Transcripts
Kim RNA Brkpts
Kim RNA Modific.
CpG Islands
-   Comparative Genomics
44 Bat CoVs
119 Vertebrate CoVs
Human CoV
-   Variation and Repeats
Phylogeny: Public
Phylogeny: GISAID
updated Nextstrain Clades
updated Nextstrain Mutations
Intrahost SNPs
Natural Selection
B.1.1.7 in USA
updated Nextstrain Frequency
updated Nextstrain Parsimony
Pot. pathogenic indels
Simple Repeats
Spike Mutations
updated Variants of Concern
WM + SDust

For information about this browser and related resources, see COVID-19 Research at UCSC.

GISAID data displayed in the Genome Browser are subject to GISAID's Terms and Conditions. SARS-CoV-2 genome sequences and metadata are available for download from GISAID EpiCoV™.