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Gencode Genes

ELF3-AS1 (ENST00000419190.2) at chr1:201995696-202010463 - ELF3 antisense RNA 1 (from HGNC ELF3-AS1)
ELF3 (ENST00000359651.7) at chr1:202007945-202016009 - Transcriptional activator that binds and transactivates  ETS sequences containing the consensus nucleotide core sequence  GGA[AT]. Acts synergistically with POU2F3 to transactivate the  SPRR2A promoter and with RUNX1 to transactivate the ANGPT1  promoter. Also transactivates collagenase, CCL20, CLND7, FLG,  KRT8, NOS2, PTGS2, SPRR2B, TGFBR2 and TGM3 promoters. Represses  KRT4 promoter activity. Involved in mediating vascular  inflammation. May play an important role in epithelial cell  differentiation and tumorigenesis. May be a critical downstream  effector of the ERBB2 signaling pathway. May be associated with  mammary gland development and involution. Plays an important role  in the regulation of transcription with TATA-less promoters in  preimplantation embryos, which is essential in preimplantation  development (By similarity). (from UniProt P78545)
ELF3 (ENST00000498017.1) at chr1:202010625-202011808 - E74 like ETS transcription factor 3 (from HGNC ELF3)
ELF3 (ENST00000495848.1) at chr1:202010594-202012571 - E74 like ETS transcription factor 3 (from HGNC ELF3)
ELF3 (ENST00000490203.5) at chr1:202010599-202013268 - E74 like ETS transcription factor 3 (from HGNC ELF3)
ELF3 (ENST00000479874.1) at chr1:202012569-202012995 - E74 like ETS transcription factor 3 (from HGNC ELF3)
ELF3 (ENST00000475698.1) at chr1:202013778-202015794 - E74 like ETS transcription factor 3 (from HGNC ELF3)
ELF3 (ENST00000470384.1) at chr1:202012445-202013276 - E74 like ETS transcription factor 3 (from HGNC ELF3)
ELF3 (ENST00000446188.1) at chr1:202010644-202013197 - E74 like ETS transcription factor 3 (from HGNC ELF3)
ELF3-AS1 (ENST00000415582.1) at chr1:202000101-202001283 - ELF3 antisense RNA 1 (from HGNC ELF3-AS1)
ELF3 (ENST00000367284.10) at chr1:202010587-202017183 - Homo sapiens E74 like ETS transcription factor 3 (ELF3), transcript variant 1, mRNA. (from RefSeq NM_004433)
ELF3 (ENST00000367283.7) at chr1:202010587-202016009 - Transcriptional activator that binds and transactivates  ETS sequences containing the consensus nucleotide core sequence  GGA[AT]. Acts synergistically with POU2F3 to transactivate the  SPRR2A promoter and with RUNX1 to transactivate the ANGPT1  promoter. Also transactivates collagenase, CCL20, CLND7, FLG,  KRT8, NOS2, PTGS2, SPRR2B, TGFBR2 and TGM3 promoters. Represses  KRT4 promoter activity. Involved in mediating vascular  inflammation. May play an important role in epithelial cell  differentiation and tumorigenesis. May be a critical downstream  effector of the ERBB2 signaling pathway. May be associated with  mammary gland development and involution. Plays an important role  in the regulation of transcription with TATA-less promoters in  preimplantation embryos, which is essential in preimplantation  development (By similarity). (from UniProt P78545)
GANAB (ENST00000534613.5) at chr11:62633057-62646616 - Cleaves sequentially the 2 innermost alpha-1,3-linked  glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide  precursor of immature glycoproteins. (from UniProt Q14697)
GANAB (ENST00000532402.5) at chr11:62624826-62646602 - Cleaves sequentially the 2 innermost alpha-1,3-linked  glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide  precursor of immature glycoproteins. (from UniProt Q14697)
GANAB (ENST00000526210.1) at chr11:62634753-62646613 - Cleaves sequentially the 2 innermost alpha-1,3-linked  glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide  precursor of immature glycoproteins. (from UniProt Q14697)
GANAB (ENST00000346178.8) at chr11:62624826-62646615 - Homo sapiens glucosidase II alpha subunit (GANAB), transcript variant 3, mRNA. (from RefSeq NM_198335)
TBP (ENST00000230354.10) at chr6:170554379-170572870 - General transcription factor that functions at the core  of the DNA-binding multiprotein factor TFIID. Binding of TFIID to  the TATA box is the initial transcriptional step of the pre-  initiation complex (PIC), playing a role in the activation of  eukaryotic genes transcribed by RNA polymerase II. Component of  the transcription factor SL1/TIF-IB complex, which is involved in  the assembly of the PIC (preinitiation complex) during RNA  polymerase I-dependent transcription. The rate of PIC formation  probably is primarily dependent on the rate of association of SL1  with the rDNA promoter. SL1 is involved in stabilization of  nucleolar transcription factor 1/UBTF on rDNA. (from UniProt P20226)
CREBBP (ENST00000262367.9) at chr16:3725054-3880726 - Homo sapiens CREB binding protein (CREBBP), transcript variant 1, mRNA. (from RefSeq NM_004380)
CREBBP (ENST00000382070.7) at chr16:3727539-3880120 - Homo sapiens CREB binding protein (CREBBP), transcript variant 2, mRNA. (from RefSeq NM_001079846)
XRCC6 (ENST00000360079.7) at chr22:41621119-41664039 - Homo sapiens X-ray repair cross complementing 6 (XRCC6), transcript variant 1, mRNA. (from RefSeq NM_001469)
XRCC6 (ENST00000402580.7) at chr22:41621295-41664048 - Homo sapiens X-ray repair cross complementing 6 (XRCC6), transcript variant 3, mRNA. (from RefSeq NM_001288977)
XRCC6 (ENST00000359308.8) at chr22:41621350-41664039 - Homo sapiens X-ray repair cross complementing 6 (XRCC6), transcript variant 2, mRNA. (from RefSeq NM_001288976)
EP300 (ENST00000263253.9) at chr22:41092592-41180077 - Homo sapiens E1A binding protein p300 (EP300), transcript variant 1, mRNA. (from RefSeq NM_001429)
TBP (ENST00000540980.5) at chr6:170554333-170572869 - Homo sapiens TATA-box binding protein (TBP), transcript variant 2, mRNA. (from RefSeq NM_001172085)
TBP (ENST00000392092.7) at chr6:170554369-170572859 - Homo sapiens TATA-box binding protein (TBP), transcript variant 1, mRNA. (from RefSeq NM_003194)
XRCC6 (ENST00000405878.5) at chr22:41621461-41664039 - Single stranded DNA-dependent ATP-dependent helicase.  Has a role in chromosome translocation. The DNA helicase II  complex binds preferentially to fork-like ends of double-stranded  DNA in a cell cycle-dependent manner. It works in the 3'-5'  direction. Binding to DNA may be mediated by XRCC6. Involved in  DNA non-homologous end joining (NHEJ) required for double-strand  break repair and V(D)J recombination. The XRCC5/6 dimer acts as  regulatory subunit of the DNA-dependent protein kinase complex  DNA-PK by increasing the affinity of the catalytic subunit PRKDC  to DNA by 100-fold. The XRCC5/6 dimer is probably involved in  stabilizing broken DNA ends and bringing them together. The  assembly of the DNA-PK complex to DNA ends is required for the  NHEJ ligation step. Required for osteocalcin gene expression.  Probably also acts as a 5'-deoxyribose-5-phosphate lyase (5'-dRP  lyase), by catalyzing the beta-elimination of the 5' deoxyribose-  5-phosphate at an abasic site near double-strand breaks. 5'-dRP  lyase activity allows to 'clean' the termini of abasic sites, a  class of nucleotide damage commonly associated with strand breaks,  before such broken ends can be joined. The XRCC5/6 dimer together  with APEX1 acts as a negative regulator of transcription. (from UniProt P12956)
XRCC5 (ENST00000392132.7) at chr2:216109348-216206293 - Homo sapiens X-ray repair cross complementing 5 (XRCC5), mRNA. (from RefSeq NM_021141)
XRCC5 (ENST00000392133.7) at chr2:216107464-216206303 - Single stranded DNA-dependent ATP-dependent helicase.  Has a role in chromosome translocation. The DNA helicase II  complex binds preferentially to fork-like ends of double-stranded  DNA in a cell cycle-dependent manner. It works in the 3'-5'  direction. Binding to DNA may be mediated by XRCC6. Involved in  DNA non-homologous end joining (NHEJ) required for double-strand  break repair and V(D)J recombination. The XRCC5/6 dimer acts as  regulatory subunit of the DNA-dependent protein kinase complex  DNA-PK by increasing the affinity of the catalytic subunit PRKDC  to DNA by 100-fold. The XRCC5/6 dimer is probably involved in  stabilizing broken DNA ends and bringing them together. The  assembly of the DNA-PK complex to DNA ends is required for the  NHEJ ligation step. In association with NAA15, the XRCC5/6 dimer  binds to the osteocalcin promoter and activates osteocalcin  expression. The XRCC5/6 dimer probably also acts as a 5'-  deoxyribose-5-phosphate lyase (5'-dRP lyase), by catalyzing the  beta-elimination of the 5' deoxyribose-5-phosphate at an abasic  site near double-strand breaks. XRCC5 probably acts as the  catalytic subunit of 5'-dRP activity, and allows to 'clean' the  termini of abasic sites, a class of nucleotide damage commonly  associated with strand breaks, before such broken ends can be  joined. The XRCC5/6 dimer together with APEX1 acts as a negative  regulator of transcription. (from UniProt P13010)

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

NM_004433.4 at chr1:202010562-202017188
NM_001114309.1 at chr1:202010562-202017188
NR_146472.1 at chr1:202000051-202010353

NCBI RefSeq genes, predicted subset (XM_* or XR_*)

XM_005244942.3 at chr1:202010583-202013036

NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6)

ELF3 at chr1:202010587-202017183

RefSeq Genes

ELF3 at chr1:202010587-202017180 - (NM_001114309) ETS-related transcription factor Elf-3
ELF3 at chr1:202010587-202017180 - (NM_004433) ETS-related transcription factor Elf-3
ELF3-AS1 at chr1:202000051-202010353 - (NR_146472) 

NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)

ELF3 antisense RNA 1 at chr1:202000051-202010353 - (NR_146472.1)

Non-Human RefSeq Genes

ELF3 at chr1:202010625-202016520 - (NM_001133885) ETS-related transcription factor Elf-3
ELF3 at chr1:202011128-202016004 - (NM_001098909) ETS-related transcription factor Elf-3
Elf3 at chr1:202011128-202016004 - (NM_001024768) ETS-related transcription factor Elf-3
Elf3 at chr1:202011128-202016009 - (NM_001163131) ETS-related transcription factor Elf-3 isoform 1
Elf3 at chr1:202011128-202016009 - (NM_007921) ETS-related transcription factor Elf-3 isoform 2

Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010587-202017183

Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010587-202017183
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009

Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)

ELF3 at chr1:202007945-202016009
ELF3 at chr1:202010517-202017188
ELF3 at chr1:202010587-202016009
ELF3 at chr1:202010594-202012571
ELF3 at chr1:202010599-202013268
ELF3 at chr1:202010625-202011808
ELF3 at chr1:202010644-202013197
ELF3 at chr1:202012445-202013276
ELF3 at chr1:202012569-202012995
ELF3 at chr1:202013778-202015794

International Knockout Mouse Consortium Genes Mapped to Human Genome

Elf3_47014 at chr1:202010562-202017188
Elf3_79271 at chr1:202010562-202017188
Elf3_VG16621 at chr1:202010562-202017188

Human Aligned mRNA Search Results

BC003569 - Homo sapiens E74-like factor 3 (ets domain transcription factor, epithelial-specific), mRNA (cDNA clone MGC:2088 IMAGE:3537846), complete cds.
AF016295 - Homo sapiens Ets transcription factor (ELF3) mRNA, complete cds.
AF517841 - Homo sapiens E74-like factor 3 (ELF3) mRNA, complete cds.
CR457106 - Homo sapiens full open reading frame cDNA clone RZPDo834G1111D for gene ELF3, E74-like factor 3 (ets domain transcription factor, epithelial-specific); complete cds, incl. stopcodon.
KM576734 - Homo sapiens clone RNPEP-ELF3_Ri6middle-E1middle mRNA sequence.
AK312273 - Homo sapiens cDNA, FLJ92570, Homo sapiens E74-like factor 3 (ets domain transcription factor,epithelial-specific) (ELF3), mRNA.

Non-Human Aligned mRNA Search Results

BC145380 - Mus musculus E74-like factor 3, mRNA (cDNA clone MGC:178946 IMAGE:9053938), complete cds.
BC142205 - Bos taurus E74-like factor 3 (ets domain transcription factor, epithelial-specific), mRNA (cDNA clone MGC:139318 IMAGE:8209738), complete cds.
BC097980 - Rattus norvegicus E74-like factor 3, mRNA (cDNA clone MGC:116113 IMAGE:7443278), complete cds.
BC138692 - Mus musculus E74-like factor 3, mRNA (cDNA clone MGC:170319 IMAGE:8861714), complete cds.
AF016294 - Mus musculus Ets transcription factor (ELF3) mRNA, complete cds.
AY888164 - Synthetic construct Homo sapiens clone FLH117779.01X E74-like factor 3 (ELF3) mRNA, complete cds.
AY889551 - Synthetic construct Homo sapiens clone FLH116669.01X E74-like factor 3 (ELF3) mRNA, complete cds.
AY890742 - Synthetic construct Homo sapiens clone FLH117775.01L E74-like factor 3 (ELF3) mRNA, partial cds.
AY891117 - Synthetic construct Homo sapiens clone FLH007684.01L E74-like factor 3 (ELF3) mRNA, partial cds.
AY892014 - Synthetic construct Homo sapiens clone FLH116665.01L E74-like factor 3 (ELF3) mRNA, partial cds.
AY893240 - Synthetic construct Homo sapiens clone FLH058419.01X E74-like factor 3 (ELF3) mRNA, complete cds.
AY893693 - Synthetic construct Homo sapiens clone FLH058417.01L E74-like factor 3 (ELF3) mRNA, partial cds.
JU176119 - TSA: Crotalus adamanteus Cadam_TF-Elf3, mRNA sequence.