DQ580661
 

Information on mRNA DQ580661

Description: Homo sapiens piRNA piR-48773, complete sequence.
Gene: n/a
Product: n/a
Author: Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
Organism: Homo sapiens
Tissue: n/a
Development stage: n/a
Cell line: n/a
Sex: n/a
Library: n/a
Clone: n/a
CDS: n/a
Date: 2008-11-02
Version: 1
mRNA sequence: DQ580661
Position: chr17:35195935-35195964

mRNA/Genomic Alignments

The alignment you clicked on is first in the table below.
BROWSER | SIZE IDENTITY CHROMOSOME  STRAND    START     END              QUERY      START  END  TOTAL
-----------------------------------------------------------------------------------------------------
browser |    30  100.0%         17     +  35195935  35195964              DQ580661     1    30    30
browser |    30  100.0%          1     -  10028418  10028447              DQ580661     1    30    30
browser |    30  100.0%          1     +  11306503  11306532              DQ580661     1    30    30
browser |    30  100.0%          1     -  12042730  12042759              DQ580661     1    30    30
browser |    30  100.0%          1     -  12902450  12902479              DQ580661     1    30    30
browser |    30  100.0%          1     +  13299312  13299341              DQ580661     1    30    30
browser |    30  100.0%          1     -  21023325  21023354              DQ580661     1    30    30
browser |    30  100.0%          1     -  21052637  21052666              DQ580661     1    30    30
browser |    30  100.0%          1     -  23503325  23503354              DQ580661     1    30    30
browser |    30  100.0%          1     -  23688244  23688273              DQ580661     1    30    30
browser |    30  100.0%          1     -  23935047  23935076              DQ580661     1    30    30
browser |    30  100.0%          1     +  24032810  24032839              DQ580661     1    30    30
browser |    30  100.0%          1     -  25603316  25603345              DQ580661     1    30    30
browser |    30  100.0%          1     -  26595533  26595562              DQ580661     1    30    30
browser |    29  100.0%          1     +  26804788  26804816              DQ580661     2    30    30
browser |    30  100.0%          1     +  27289917  27289946              DQ580661     1    30    30
browser |    30  100.0%          1     -  27852204  27852233              DQ580661     1    30    30
browser |    30  100.0%          1     -  38646865  38646894              DQ580661     1    30    30
browser |    30  100.0%          1     -  39999110  39999139              DQ580661     1    30    30
browser |    30  100.0%          1     -  44875841  44875870              DQ580661     1    30    30
browser |    30  100.0%          1     -  45724038  45724067              DQ580661     1    30    30
browser |    30  100.0%          1     -  48478794  48478823              DQ580661     1    30    30
browser |    30  100.0%          1     +  51712334  51712363              DQ580661     1    30    30
browser |    30  100.0%          1     +  76113271  76113300              DQ580661     1    30    30
browser |    30  100.0%          1     -  86215169  86215198              DQ580661     1    30    30
browser |    30  100.0%          1     +  86900520  86900549              DQ580661     1    30    30
browser |    30  100.0%          1     +  86964570  86964599              DQ580661     1    30    30
browser |    27  100.0%          1     +  90892474  90892500              DQ580661     4    30    30
browser |    30  100.0%          1     +  96470525  96470554              DQ580661     1    30    30
browser |    30  100.0%          1     -  99823012  99823041              DQ580661     1    30    30
browser |    30  100.0%          1     + 108160882 108160911              DQ580661     1    30    30
browser |    30  100.0%          1     + 108490751 108490780              DQ580661     1    30    30
browser |    30   96.7%          1     + 108536750 108536779              DQ580661     1    30    30
browser |    30  100.0%          1     - 108675137 108675166              DQ580661     1    30    30
browser |    30  100.0%          1     + 111608833 111608862              DQ580661     1    30    30
browser |    30  100.0%          1     + 114805263 114805292              DQ580661     1    30    30
browser |    30  100.0%          1     + 117431131 117431160              DQ580661     1    30    30
browser |    30  100.0%          1     - 143702120 143702149              DQ580661     1    30    30
browser |    30  100.0%          1     - 145763970 145763999              DQ580661     1    30    30
browser |    30  100.0%          1     + 147950865 147950894              DQ580661     1    30    30
browser |    30  100.0%          1     + 150729907 150729936              DQ580661     1    30    30
browser |    30  100.0%          1     - 150780932 150780961              DQ580661     1    30    30
browser |    30  100.0%          1     + 151652123 151652152              DQ580661     1    30    30
browser |    30  100.0%          1     + 151770004 151770033              DQ580661     1    30    30
browser |    30  100.0%          1     + 152197156 152197185              DQ580661     1    30    30
browser |    30  100.0%          1     + 152257081 152257110              DQ580661     1    30    30
browser |    30  100.0%          1     - 153582371 153582400              DQ580661     1    30    30
browser |    30  100.0%          1     + 161282319 161282348              DQ580661     1    30    30
browser |    30  100.0%          1     - 162465459 162465488              DQ580661     1    30    30
browser |    30  100.0%          1     - 170418308 170418337              DQ580661     1    30    30
browser |    30  100.0%          1     - 173612647 173612676              DQ580661     1    30    30
browser |    30  100.0%          1     + 174351012 174351041              DQ580661     1    30    30
browser |    30  100.0%          1     + 179041558 179041587              DQ580661     1    30    30
browser |    30  100.0%          1     + 179419546 179419575              DQ580661     1    30    30
browser |    30  100.0%          1     - 197405132 197405161              DQ580661     1    30    30
browser |    30  100.0%          1     + 199905272 199905301              DQ580661     1    30    30
browser |    30  100.0%          1     + 202452482 202452511              DQ580661     1    30    30
browser |    30  100.0%          1     + 203842530 203842559              DQ580661     1    30    30
browser |    30  100.0%          1     - 209128534 209128563              DQ580661     1    30    30
browser |    30  100.0%          1     + 212322120 212322149              DQ580661     1    30    30
browser |    30  100.0%          1     - 212778455 212778484              DQ580661     1    30    30
browser |    30  100.0%          1     + 217524793 217524822              DQ580661     1    30    30
browser |    30  100.0%          1     + 220467450 220467479              DQ580661     1    30    30
browser |    30  100.0%          1     - 222487055 222487084              DQ580661     1    30    30
browser |    30  100.0%          1     + 226115881 226115910              DQ580661     1    30    30
browser |    30  100.0%          1     + 227711783 227711812              DQ580661     1    30    30
browser |    30  100.0%          1     - 231127956 231127985              DQ580661     1    30    30
browser |    30  100.0%          1     - 236385980 236386009              DQ580661     1    30    30
browser |    30  100.0%          1     + 237128306 237128335              DQ580661     1    30    30
browser |    30  100.0%          1     - 245774757 245774786              DQ580661     1    30    30
browser |    30  100.0%          1     - 246362517 246362546              DQ580661     1    30    30
browser |    30  100.0%          1     - 247220045 247220074              DQ580661     1    30    30
browser |    30  100.0%          1     - 248829827 248829856              DQ580661     1    30    30
browser |    30  100.0%         10     +   2806912   2806941              DQ580661     1    30    30
browser |    30  100.0%         10     +   6207369   6207398              DQ580661     1    30    30
browser |    30  100.0%         10     +  12523677  12523706              DQ580661     1    30    30
browser |    30  100.0%         10     +  27297415  27297444              DQ580661     1    30    30
browser |    29  100.0%         10     -  29696008  29696036              DQ580661     2    30    30
browser |    30  100.0%         10     -  34352402  34352431              DQ580661     1    30    30
browser |    30   96.7%         10     -  42137599  42137628              DQ580661     1    30    30
browser |    30  100.0%         10     +  43466120  43466149              DQ580661     1    30    30
browser |    30  100.0%         10     +  45330841  45330870              DQ580661     1    30    30
browser |    30  100.0%         10     -  45391149  45391178              DQ580661     1    30    30
browser |    30  100.0%         10     -  45511464  45511493              DQ580661     1    30    30
browser |    30  100.0%         10     +  45866297  45866326              DQ580661     1    30    30
browser |    30  100.0%         10     -  49969847  49969876              DQ580661     1    30    30
browser |    30  100.0%         10     -  62947081  62947110              DQ580661     1    30    30
browser |    30  100.0%         10     +  70688789  70688818              DQ580661     1    30    30
browser |    30  100.0%         10     +  71870377  71870406              DQ580661     1    30    30
browser |    30  100.0%         10     +  78469616  78469645              DQ580661     1    30    30
browser |    30  100.0%         10     -  80533445  80533474              DQ580661     1    30    30
browser |    30  100.0%         10     -  98152009  98152038              DQ580661     1    30    30
browser |    30  100.0%         10     -  99891240  99891269              DQ580661     1    30    30
browser |    30  100.0%         10     - 100092247 100092276              DQ580661     1    30    30
browser |    29  100.0%         10     - 100276558 100276586              DQ580661     2    30    30
browser |    30  100.0%         10     - 102035460 102035489              DQ580661     1    30    30
browser |    30  100.0%         10     - 103128132 103128161              DQ580661     1    30    30
browser |    30  100.0%         10     + 110768162 110768191              DQ580661     1    30    30
browser |    30  100.0%         10     - 118894991 118895020              DQ580661     1    30    30
browser |    30  100.0%         10     - 119721414 119721443              DQ580661     1    30    30
browser |    30  100.0%         10     + 120215974 120216003              DQ580661     1    30    30
browser |    30  100.0%         10     - 125517825 125517854              DQ580661     1    30    30
browser |    30  100.0%  10_GL383545v1_alt     +     11761     11790              DQ580661     1    30    30
browser |    30  100.0%  10_GL383546v1_alt     +    155608    155637              DQ580661     1    30    30
browser |    30  100.0%  10_GL383546v1_alt     -    231980    232009              DQ580661     1    30    30
browser |    30   96.7%  10_KI270824v1_alt     -     34360     34389              DQ580661     1    30    30
browser |    30  100.0%         11     -   2331814   2331843              DQ580661     1    30    30
browser |    30  100.0%         11     -  16906377  16906406              DQ580661     1    30    30
browser |    30  100.0%         11     +  19860963  19860992              DQ580661     1    30    30
browser |    30  100.0%         11     -  28429424  28429453              DQ580661     1    30    30
browser |    30  100.0%         11     -  33985610  33985639              DQ580661     1    30    30
browser |    30  100.0%         11     -  36143985  36144014              DQ580661     1    30    30
browser |    30  100.0%         11     -  41303154  41303183              DQ580661     1    30    30
browser |    30  100.0%         11     -  44662998  44663027              DQ580661     1    30    30
browser |    30   96.7%         11     +  50063689  50063718              DQ580661     1    30    30
browser |    30  100.0%         11     +  57717635  57717664              DQ580661     1    30    30
browser |    30  100.0%         11     +  60073867  60073896              DQ580661     1    30    30
browser |    30  100.0%         11     -  60621433  60621462              DQ580661     1    30    30
browser |    30  100.0%         11     -  60814537  60814566              DQ580661     1    30    30
browser |    30  100.0%         11     +  61167187  61167216              DQ580661     1    30    30
browser |    30  100.0%         11     -  62277987  62278016              DQ580661     1    30    30
browser |    30  100.0%         11     +  64173379  64173408              DQ580661     1    30    30
browser |    30  100.0%         11     -  65238685  65238714              DQ580661     1    30    30
browser |    30  100.0%         11     +  65763601  65763630              DQ580661     1    30    30
browser |    29  100.0%         11     -  66587054  66587082              DQ580661     1    29    30
browser |    28  100.0%         11     +  68476397  68476424              DQ580661     3    30    30
browser |    30  100.0%         11     +  70296614  70296643              DQ580661     1    30    30
browser |    30  100.0%         11     +  72503462  72503491              DQ580661     1    30    30
browser |    29  100.0%         11     +  73937606  73937634              DQ580661     2    30    30
browser |    30  100.0%         11     +  74130005  74130034              DQ580661     1    30    30
browser |    30  100.0%         11     +  75878793  75878822              DQ580661     1    30    30
browser |    30  100.0%         11     +  76934617  76934646              DQ580661     1    30    30
browser |    30  100.0%         11     +  77099651  77099680              DQ580661     1    30    30
browser |    30  100.0%         11     -  77489505  77489534              DQ580661     1    30    30
browser |    29  100.0%         11     -  79191183  79191211              DQ580661     2    30    30
browser |    30  100.0%         11     -  82181259  82181288              DQ580661     1    30    30
browser |    30  100.0%         11     +  83317729  83317758              DQ580661     1    30    30
browser |    30  100.0%         11     -  85852430  85852459              DQ580661     1    30    30
browser |    30  100.0%         11     -  86109995  86110024              DQ580661     1    30    30
browser |    30  100.0%         11     -  86731622  86731651              DQ580661     1    30    30
browser |    30  100.0%         11     +  86771400  86771429              DQ580661     1    30    30
browser |    30  100.0%         11     -  86878319  86878348              DQ580661     1    30    30
browser |    30  100.0%         11     -  89860079  89860108              DQ580661     1    30    30
browser |    30  100.0%         11     +  89984401  89984430              DQ580661     1    30    30
browser |    30  100.0%         11     -  91062912  91062941              DQ580661     1    30    30
browser |    30  100.0%         11     -  92156958  92156987              DQ580661     1    30    30
browser |    30  100.0%         11     +  93948168  93948197              DQ580661     1    30    30
browser |    30  100.0%         11     +  95321998  95322027              DQ580661     1    30    30
browser |    30  100.0%         11     -  95481874  95481903              DQ580661     1    30    30
browser |    30  100.0%         11     - 107911861 107911890              DQ580661     1    30    30
browser |    30  100.0%         11     + 118332658 118332687              DQ580661     1    30    30
browser |    30  100.0%         11     + 119508804 119508833              DQ580661     1    30    30
browser |    30  100.0%         11     + 130092643 130092672              DQ580661     1    30    30
browser |    30   96.7%  11_KN196481v1_fix     +     81450     81479              DQ580661     1    30    30
browser |    30   96.7%  11_KV766195v1_fix     +    105315    105344              DQ580661     1    30    30
browser |    30  100.0%  11_KZ559111v1_alt     +    167756    167785              DQ580661     1    30    30
browser |    30  100.0%         12     -   1817540   1817569              DQ580661     1    30    30
browser |    29  100.0%         12     +   7200823   7200851              DQ580661     2    30    30
browser |    30  100.0%         12     +   7591076   7591105              DQ580661     1    30    30
browser |    30  100.0%         12     -   9952242   9952271              DQ580661     1    30    30
browser |    30   96.7%         12     -  12565466  12565495              DQ580661     1    30    30
browser |    30  100.0%         12     -  27873388  27873417              DQ580661     1    30    30
browser |    30  100.0%         12     +  28201960  28201989              DQ580661     1    30    30
browser |    30  100.0%         12     +  32563933  32563962              DQ580661     1    30    30
browser |    30  100.0%         12     +  37815840  37815869              DQ580661     1    30    30
browser |    30  100.0%         12     +  48501441  48501470              DQ580661     1    30    30
browser |    30  100.0%         12     +  49437761  49437790              DQ580661     1    30    30
browser |    30  100.0%         12     -  49860289  49860318              DQ580661     1    30    30
browser |    30  100.0%         12     -  52409128  52409157              DQ580661     1    30    30
browser |    30  100.0%         12     +  54489175  54489204              DQ580661     1    30    30
browser |    30  100.0%         12     +  55480003  55480032              DQ580661     1    30    30
browser |    30  100.0%         12     +  56076658  56076687              DQ580661     1    30    30
browser |    30  100.0%         12     +  56784609  56784638              DQ580661     1    30    30
browser |    30  100.0%         12     -  56962903  56962932              DQ580661     1    30    30
browser |    30  100.0%         12     -  66133989  66134018              DQ580661     1    30    30
browser |    30  100.0%         12     -  75941099  75941128              DQ580661     1    30    30
browser |    30  100.0%         12     -  89503171  89503200              DQ580661     1    30    30
browser |    30  100.0%         12     +  95236355  95236384              DQ580661     1    30    30
browser |    30  100.0%         12     -  95946682  95946711              DQ580661     1    30    30
browser |    30  100.0%         12     + 100295631 100295660              DQ580661     1    30    30
browser |    30  100.0%         12     - 110172443 110172472              DQ580661     1    30    30
browser |    30  100.0%         12     + 110868653 110868682              DQ580661     1    30    30
browser |    30  100.0%         12     + 119919657 119919686              DQ580661     1    30    30
browser |    30  100.0%         12     - 121993034 121993063              DQ580661     1    30    30
browser |    30  100.0%         12     - 122356694 122356723              DQ580661     1    30    30
browser |    30  100.0%         12     + 130998106 130998135              DQ580661     1    30    30
browser |    30   96.7%  12_KN538369v1_fix     +    384485    384514              DQ580661     1    30    30
browser |    30  100.0%  12_KZ208916v1_fix     -    159684    159713              DQ580661     1    30    30
browser |    30   96.7%  12_KZ208917v1_fix     +     40408     40437              DQ580661     1    30    30
browser |    30  100.0%         13     -  19778438  19778467              DQ580661     1    30    30
browser |    27  100.0%         13     +  21187335  21187361              DQ580661     1    27    30
browser |    30  100.0%         13     +  25481088  25481117              DQ580661     1    30    30
browser |    30  100.0%         13     -  26723215  26723244              DQ580661     1    30    30
browser |    30  100.0%         13     -  31999536  31999565              DQ580661     1    30    30
browser |    30  100.0%         13     -  32715715  32715744              DQ580661     1    30    30
browser |    30  100.0%         13     -  34539900  34539929              DQ580661     1    30    30
browser |    30  100.0%         13     -  37279709  37279738              DQ580661     1    30    30
browser |    30  100.0%         13     -  40899805  40899834              DQ580661     1    30    30
browser |    30  100.0%         13     -  40954504  40954533              DQ580661     1    30    30
browser |    30  100.0%         13     +  41882736  41882765              DQ580661     1    30    30
browser |    30  100.0%         13     -  42965850  42965879              DQ580661     1    30    30
browser |    30  100.0%         13     +  45486233  45486262              DQ580661     1    30    30
browser |    30  100.0%         13     -  49377458  49377487              DQ580661     1    30    30
browser |    30  100.0%         13     -  49565071  49565100              DQ580661     1    30    30
browser |    30  100.0%         13     -  49592208  49592237              DQ580661     1    30    30
browser |    30  100.0%         13     -  49761295  49761324              DQ580661     1    30    30
browser |    30  100.0%         13     -  51077206  51077235              DQ580661     1    30    30
browser |    30  100.0%         13     -  52079356  52079385              DQ580661     1    30    30
browser |    30  100.0%         13     +  87977472  87977501              DQ580661     1    30    30
browser |    30  100.0%         13     + 110607218 110607247              DQ580661     1    30    30
browser |    30  100.0%         14     -  21188273  21188302              DQ580661     1    30    30
browser |    30  100.0%         14     -  23231696  23231725              DQ580661     1    30    30
browser |    30  100.0%         14     +  31438106  31438135              DQ580661     1    30    30
browser |    30  100.0%         14     +  33985020  33985049              DQ580661     1    30    30
browser |    30  100.0%         14     +  35153322  35153351              DQ580661     1    30    30
browser |    30  100.0%         14     +  35825515  35825544              DQ580661     1    30    30
browser |    30  100.0%         14     +  35978565  35978594              DQ580661     1    30    30
browser |    30  100.0%         14     +  41675535  41675564              DQ580661     1    30    30
browser |    30  100.0%         14     -  44600872  44600901              DQ580661     1    30    30
browser |    30  100.0%         14     -  54202675  54202704              DQ580661     1    30    30
browser |    30  100.0%         14     -  57333146  57333175              DQ580661     1    30    30
browser |    30  100.0%         14     +  59059599  59059628              DQ580661     1    30    30
browser |    30  100.0%         14     -  63164892  63164921              DQ580661     1    30    30
browser |    30  100.0%         14     -  63522000  63522029              DQ580661     1    30    30
browser |    30  100.0%         14     +  63751990  63752019              DQ580661     1    30    30
browser |    30  100.0%         14     -  65633075  65633104              DQ580661     1    30    30
browser |    30  100.0%         14     +  66546704  66546733              DQ580661     1    30    30
browser |    30  100.0%         14     +  73185527  73185556              DQ580661     1    30    30
browser |    30  100.0%         14     -  80286054  80286083              DQ580661     1    30    30
browser |    30  100.0%         14     +  85830563  85830592              DQ580661     1    30    30
browser |    30   96.7%         14     +  91558279  91558308              DQ580661     1    30    30
browser |    30  100.0%         14     +  92912612  92912641              DQ580661     1    30    30
browser |    30  100.0%         14     -  94657480  94657509              DQ580661     1    30    30
browser |    30  100.0%         14     - 100180345 100180374              DQ580661     1    30    30
browser |    30  100.0%         14     - 100344139 100344168              DQ580661     1    30    30
browser |    30  100.0%         14     + 105079978 105080007              DQ580661     1    30    30
browser |    30   96.7%  14_KI270844v1_alt     +     22415     22444              DQ580661     1    30    30
browser |    30  100.0%  14_KI270847v1_alt     +     27174     27203              DQ580661     1    30    30
browser |    30  100.0%  14_KZ208919v1_alt     +     87942     87971              DQ580661     1    30    30
browser |    30  100.0%         15     -  28069469  28069498              DQ580661     1    30    30
browser |    30  100.0%         15     +  28850573  28850602              DQ580661     1    30    30
browser |    30  100.0%         15     +  39895152  39895181              DQ580661     1    30    30
browser |    30  100.0%         15     -  40682153  40682182              DQ580661     1    30    30
browser |    30  100.0%         15     -  41320334  41320363              DQ580661     1    30    30
browser |    30  100.0%         15     -  43013938  43013967              DQ580661     1    30    30
browser |    30  100.0%         15     +  45293883  45293912              DQ580661     1    30    30
browser |    30  100.0%         15     -  51293613  51293642              DQ580661     1    30    30
browser |    30  100.0%         15     +  51886598  51886627              DQ580661     1    30    30
browser |    30  100.0%         15     -  52285540  52285569              DQ580661     1    30    30
browser |    30  100.0%         15     -  56109102  56109131              DQ580661     1    30    30
browser |    30  100.0%         15     +  62690946  62690975              DQ580661     1    30    30
browser |    30  100.0%         15     -  63098331  63098360              DQ580661     1    30    30
browser |    30  100.0%         15     +  64799977  64800006              DQ580661     1    30    30
browser |    30  100.0%         15     +  68136525  68136554              DQ580661     1    30    30
browser |    30  100.0%         15     +  68861026  68861055              DQ580661     1    30    30
browser |    30  100.0%         15     +  68965448  68965477              DQ580661     1    30    30
browser |    30  100.0%         15     +  72808001  72808030              DQ580661     1    30    30
browser |    30  100.0%         15     -  74728328  74728357              DQ580661     1    30    30
browser |    30  100.0%         15     +  82999092  82999121              DQ580661     1    30    30
browser |    30  100.0%         15     +  83823128  83823157              DQ580661     1    30    30
browser |    30  100.0%         15     +  88554400  88554429              DQ580661     1    30    30
browser |    30  100.0%         15     +  88942632  88942661              DQ580661     1    30    30
browser |    30  100.0%         15     +  89297683  89297712              DQ580661     1    30    30
browser |    30  100.0%         15     + 100774928 100774957              DQ580661     1    30    30
browser |    30  100.0%  15_KI270905v1_alt     -    203772    203801              DQ580661     1    30    30
browser |    30  100.0%  15_KN538374v1_fix     -    203772    203801              DQ580661     1    30    30
browser |    30  100.0%  15_KN538374v1_fix     +   1012558   1012587              DQ580661     1    30    30
browser |    30  100.0%         16     +   2400695   2400724              DQ580661     1    30    30
browser |    30  100.0%         16     +   2802803   2802832              DQ580661     1    30    30
browser |    30  100.0%         16     -   8114470   8114499              DQ580661     1    30    30
browser |    30  100.0%         16     +   8733753   8733782              DQ580661     1    30    30
browser |    30  100.0%         16     -   8981532   8981561              DQ580661     1    30    30
browser |    30  100.0%         16     +  14533338  14533367              DQ580661     1    30    30
browser |    30  100.0%         16     +  17506742  17506771              DQ580661     1    30    30
browser |    30  100.0%         16     +  24110028  24110057              DQ580661     1    30    30
browser |    30  100.0%         16     +  24575695  24575724              DQ580661     1    30    30
browser |    30  100.0%         16     +  34246799  34246828              DQ580661     1    30    30
browser |    30  100.0%         16     -  47180439  47180468              DQ580661     1    30    30
browser |    30  100.0%         16     +  56740947  56740976              DQ580661     1    30    30
browser |    30  100.0%         16     +  57201891  57201920              DQ580661     1    30    30
browser |    30  100.0%         16     +  58397739  58397768              DQ580661     1    30    30
browser |    30  100.0%         16     +  68164323  68164352              DQ580661     1    30    30
browser |    30  100.0%         16     -  70203929  70203958              DQ580661     1    30    30
browser |    30  100.0%         16     -  80242609  80242638              DQ580661     1    30    30
browser |    30  100.0%         16     -  89462136  89462165              DQ580661     1    30    30
browser |    30  100.0%  16_KI270853v1_alt     +    106195    106224              DQ580661     1    30    30
browser |    30  100.0%         17     -    598028    598057              DQ580661     1    30    30
browser |    30  100.0%         17     -   1215295   1215324              DQ580661     1    30    30
browser |    30  100.0%         17     +   1403952   1403981              DQ580661     1    30    30
browser |    30  100.0%         17     +   1690541   1690570              DQ580661     1    30    30
browser |    30  100.0%         17     +   3113538   3113567              DQ580661     1    30    30
browser |    30  100.0%         17     +   3372756   3372785              DQ580661     1    30    30
browser |    30  100.0%         17     -   3464037   3464066              DQ580661     1    30    30
browser |    30  100.0%         17     +   3564939   3564968              DQ580661     1    30    30
browser |    30  100.0%         17     -   3853707   3853736              DQ580661     1    30    30
browser |    28  100.0%         17     +  16312855  16312882              DQ580661     3    30    30
browser |    30  100.0%         17     +  17913119  17913148              DQ580661     1    30    30
browser |    30  100.0%         17     +  19628815  19628844              DQ580661     1    30    30
browser |    30  100.0%         17     -  22740565  22740594              DQ580661     1    30    30
browser |    30  100.0%         17     -  26637597  26637626              DQ580661     1    30    30
browser |    30  100.0%         17     -  27033188  27033217              DQ580661     1    30    30
browser |    30  100.0%         17     -  28223133  28223162              DQ580661     1    30    30
browser |    30  100.0%         17     -  28458239  28458268              DQ580661     1    30    30
browser |    30  100.0%         17     +  29533773  29533802              DQ580661     1    30    30
browser |    30  100.0%         17     -  30522872  30522901              DQ580661     1    30    30
browser |    30  100.0%         17     +  30736670  30736699              DQ580661     1    30    30
browser |    30  100.0%         17     -  38630287  38630316              DQ580661     1    30    30
browser |    30  100.0%         17     -  39337042  39337071              DQ580661     1    30    30
browser |    30  100.0%         17     -  41875498  41875527              DQ580661     1    30    30
browser |    30  100.0%         17     -  42448549  42448578              DQ580661     1    30    30
browser |    30  100.0%         17     -  42972389  42972418              DQ580661     1    30    30
browser |    30  100.0%         17     -  47397068  47397097              DQ580661     1    30    30
browser |    30  100.0%         17     +  58075145  58075174              DQ580661     1    30    30
browser |    30  100.0%         17     +  80537961  80537990              DQ580661     1    30    30
browser |    30  100.0%         17     -  81617715  81617744              DQ580661     1    30    30
browser |    30   96.7%  17_GL000258v2_alt     -    532910    532939              DQ580661     1    30    30
browser |    30  100.0%  17_GL000258v2_alt     +    712000    712029              DQ580661     1    30    30
browser |    30  100.0%  17_GL000258v2_alt     -   1235134   1235163              DQ580661     1    30    30
browser |    30  100.0%  17_KI270857v1_alt     -   2665606   2665635              DQ580661     1    30    30
browser |    30  100.0%  17_KI270861v1_alt     +    120569    120598              DQ580661     1    30    30
browser |    30  100.0%  17_KI270862v1_alt     +    345978    346007              DQ580661     1    30    30
browser |    30  100.0%  17_KV766196v1_fix     -    157505    157534              DQ580661     1    30    30
browser |    30  100.0%         18     +   6828283   6828312              DQ580661     1    30    30
browser |    30  100.0%         18     +   7204166   7204195              DQ580661     1    30    30
browser |    30  100.0%         18     -  12873344  12873373              DQ580661     1    30    30
browser |    30  100.0%         18     +  13099112  13099141              DQ580661     1    30    30
browser |    30  100.0%         18     +  21593522  21593551              DQ580661     1    30    30
browser |    30  100.0%         18     +  36078583  36078612              DQ580661     1    30    30
browser |    30  100.0%         18     +  49081436  49081465              DQ580661     1    30    30
browser |    30  100.0%         18     +  49578944  49578973              DQ580661     1    30    30
browser |    30  100.0%         18     -  49799271  49799300              DQ580661     1    30    30
browser |    30  100.0%         18     -  54342528  54342557              DQ580661     1    30    30
browser |    30  100.0%         18     +  67127598  67127627              DQ580661     1    30    30
browser |    30  100.0%         18     +  77029343  77029372              DQ580661     1    30    30
browser |    30  100.0%         19     -   6354879   6354908              DQ580661     1    30    30
browser |    30  100.0%         19     -   8738835   8738864              DQ580661     1    30    30
browser |    30  100.0%         19     +  20065180  20065209              DQ580661     1    30    30
browser |    30  100.0%         19     +  20176757  20176786              DQ580661     1    30    30
browser |    30  100.0%         19     +  20953358  20953387              DQ580661     1    30    30
browser |    30   96.7%         19     -  21720405  21720434              DQ580661     1    30    30
browser |    30  100.0%         19     -  21775250  21775279              DQ580661     1    30    30
browser |    30  100.0%         19     +  21866789  21866818              DQ580661     1    30    30
browser |    30  100.0%         19     +  22108641  22108670              DQ580661     1    30    30
browser |    30  100.0%         19     -  23172623  23172652              DQ580661     1    30    30
browser |    30  100.0%         19     +  34080514  34080543              DQ580661     1    30    30
browser |    30  100.0%         19     +  34922944  34922973              DQ580661     1    30    30
browser |    30  100.0%         19     +  38124934  38124963              DQ580661     1    30    30
browser |    30  100.0%         19     +  40109638  40109667              DQ580661     1    30    30
browser |    30  100.0%         19     -  40117246  40117275              DQ580661     1    30    30
browser |    30  100.0%         19     +  40649097  40649126              DQ580661     1    30    30
browser |    30  100.0%         19     +  42611203  42611232              DQ580661     1    30    30
browser |    30  100.0%         19     +  42640470  42640499              DQ580661     1    30    30
browser |    30  100.0%         19     -  44488321  44488350              DQ580661     1    30    30
browser |    30  100.0%         19     -  45647609  45647638              DQ580661     1    30    30
browser |    30  100.0%         19     -  50085812  50085841              DQ580661     1    30    30
browser |    30  100.0%         19     +  53270602  53270631              DQ580661     1    30    30
browser |    30  100.0%         19     -  57482635  57482664              DQ580661     1    30    30
browser |    30  100.0%  19_GL383573v1_alt     +    296634    296663              DQ580661     1    30    30
browser |    30   96.7%  19_GL383575v2_alt     -     81595     81624              DQ580661     1    30    30
browser |    30  100.0%  19_GL383575v2_alt     -    136440    136469              DQ580661     1    30    30
browser |    30   96.7%  19_KQ458386v1_fix     +    266287    266316              DQ580661     1    30    30
browser |    30  100.0%  1_KI270766v1_alt     +    242780    242809              DQ580661     1    30    30
browser |    30  100.0%  1_KN196473v1_fix     -     83151     83180              DQ580661     1    30    30
browser |    30  100.0%  1_KQ031383v1_fix     -     83963     83992              DQ580661     1    30    30
browser |    30  100.0%  1_KQ031383v1_fix     +    453652    453681              DQ580661     1    30    30
browser |    30  100.0%  1_KQ458383v1_alt     -    273304    273333              DQ580661     1    30    30
browser |    30  100.0%  1_KQ983255v1_alt     +    265168    265197              DQ580661     1    30    30
browser |    30  100.0%  1_KV880763v1_alt     +    173050    173079              DQ580661     1    30    30
browser |    30  100.0%  1_KV880763v1_alt     +    502364    502393              DQ580661     1    30    30
browser |    30   96.7%  1_KV880763v1_alt     +    548346    548375              DQ580661     1    30    30
browser |    30  100.0%          2     +   3569925   3569954              DQ580661     1    30    30
browser |    30  100.0%          2     +   3616691   3616720              DQ580661     1    30    30
browser |    30  100.0%          2     +  15612939  15612968              DQ580661     1    30    30
browser |    30  100.0%          2     -  25633220  25633249              DQ580661     1    30    30
browser |    30  100.0%          2     +  25911539  25911568              DQ580661     1    30    30
browser |    30  100.0%          2     -  27358822  27358851              DQ580661     1    30    30
browser |    30  100.0%          2     +  32294999  32295028              DQ580661     1    30    30
browser |    30  100.0%          2     +  32755515  32755544              DQ580661     1    30    30
browser |    30  100.0%          2     -  38402752  38402781              DQ580661     1    30    30
browser |    30  100.0%          2     +  38756637  38756666              DQ580661     1    30    30
browser |    30  100.0%          2     -  41746145  41746174              DQ580661     1    30    30
browser |    30  100.0%          2     +  42607001  42607030              DQ580661     1    30    30
browser |    30  100.0%          2     +  43063940  43063969              DQ580661     1    30    30
browser |    30  100.0%          2     +  43678642  43678671              DQ580661     1    30    30
browser |    30  100.0%          2     +  44068266  44068295              DQ580661     1    30    30
browser |    30  100.0%          2     +  47434458  47434487              DQ580661     1    30    30
browser |    30  100.0%          2     +  50829161  50829190              DQ580661     1    30    30
browser |    30  100.0%          2     +  55774663  55774692              DQ580661     1    30    30
browser |    30  100.0%          2     -  63721796  63721825              DQ580661     1    30    30
browser |    30  100.0%          2     -  63808398  63808427              DQ580661     1    30    30
browser |    30  100.0%          2     +  64042394  64042423              DQ580661     1    30    30
browser |    30  100.0%          2     +  64513141  64513170              DQ580661     1    30    30
browser |    29  100.0%          2     -  65338354  65338382              DQ580661     2    30    30
browser |    30  100.0%          2     -  71160510  71160539              DQ580661     1    30    30
browser |    28  100.0%          2     -  75724650  75724677              DQ580661     3    30    30
browser |    30  100.0%          2     -  85487120  85487149              DQ580661     1    30    30
browser |    30  100.0%          2     -  96460858  96460887              DQ580661     1    30    30
browser |    30  100.0%          2     - 105250710 105250739              DQ580661     1    30    30
browser |    30  100.0%          2     + 119845174 119845203              DQ580661     1    30    30
browser |    30  100.0%          2     - 121892133 121892162              DQ580661     1    30    30
browser |    30  100.0%          2     - 127352755 127352784              DQ580661     1    30    30
browser |    30  100.0%          2     + 127789623 127789652              DQ580661     1    30    30
browser |    30  100.0%          2     - 134063469 134063498              DQ580661     1    30    30
browser |    30  100.0%          2     + 134969284 134969313              DQ580661     1    30    30
browser |    30  100.0%          2     + 135034731 135034760              DQ580661     1    30    30
browser |    30  100.0%          2     - 142701974 142702003              DQ580661     1    30    30
browser |    30  100.0%          2     + 156452475 156452504              DQ580661     1    30    30
browser |    30  100.0%          2     - 169326272 169326301              DQ580661     1    30    30
browser |    30  100.0%          2     - 169505010 169505040              DQ580661     1    30    30
browser |    30  100.0%          2     + 169787293 169787322              DQ580661     1    30    30
browser |    30  100.0%          2     - 170149094 170149123              DQ580661     1    30    30
browser |    30  100.0%          2     + 171867554 171867583              DQ580661     1    30    30
browser |    30  100.0%          2     - 171899295 171899324              DQ580661     1    30    30
browser |    30  100.0%          2     - 172537249 172537278              DQ580661     1    30    30
browser |    30  100.0%          2     - 182385916 182385945              DQ580661     1    30    30
browser |    30  100.0%          2     + 190431637 190431666              DQ580661     1    30    30
browser |    30  100.0%          2     - 195567250 195567279              DQ580661     1    30    30
browser |    30  100.0%          2     + 197697344 197697373              DQ580661     1    30    30
browser |    30  100.0%          2     + 197924079 197924108              DQ580661     1    30    30
browser |    30  100.0%          2     + 201166895 201166924              DQ580661     1    30    30
browser |    30  100.0%          2     + 202716014 202716043              DQ580661     1    30    30
browser |    29  100.0%          2     + 206172532 206172560              DQ580661     2    30    30
browser |    30  100.0%          2     - 210950197 210950226              DQ580661     1    30    30
browser |    30  100.0%          2     - 218845967 218845996              DQ580661     1    30    30
browser |    30  100.0%          2     - 229742235 229742264              DQ580661     1    30    30
browser |    30  100.0%          2     + 233725119 233725148              DQ580661     1    30    30
browser |    30  100.0%          2     + 239450310 239450339              DQ580661     1    30    30
browser |    30  100.0%         20     -   5026952   5026981              DQ580661     1    30    30
browser |    30  100.0%         20     -   5701408   5701437              DQ580661     1    30    30
browser |    30  100.0%         20     +  11514122  11514151              DQ580661     1    30    30
browser |    30  100.0%         20     -  18193962  18193991              DQ580661     1    30    30
browser |    30  100.0%         20     +  19679435  19679464              DQ580661     1    30    30
browser |    30  100.0%         20     -  30404274  30404303              DQ580661     1    30    30
browser |    30  100.0%         20     -  31426356  31426385              DQ580661     1    30    30
browser |    30  100.0%         20     +  31472335  31472364              DQ580661     1    30    30
browser |    30  100.0%         20     -  32175399  32175428              DQ580661     1    30    30
browser |    30  100.0%         20     -  32723201  32723230              DQ580661     1    30    30
browser |    30  100.0%         20     -  33115019  33115048              DQ580661     1    30    30
browser |    30  100.0%         20     +  33537419  33537448              DQ580661     1    30    30
browser |    30  100.0%         20     -  34131901  34131930              DQ580661     1    30    30
browser |    30  100.0%         20     -  34222695  34222724              DQ580661     1    30    30
browser |    30  100.0%         20     +  34475587  34475616              DQ580661     1    30    30
browser |    30  100.0%         20     -  34658049  34658078              DQ580661     1    30    30
browser |    30  100.0%         20     -  35152930  35152959              DQ580661     1    30    30
browser |    30  100.0%         20     +  36002329  36002358              DQ580661     1    30    30
browser |    30  100.0%         20     -  36999548  36999577              DQ580661     1    30    30
browser |    30  100.0%         20     -  37011932  37011961              DQ580661     1    30    30
browser |    30  100.0%         20     -  38378225  38378254              DQ580661     1    30    30
browser |    30  100.0%         20     +  38462473  38462502              DQ580661     1    30    30
browser |    30  100.0%         20     +  41556184  41556213              DQ580661     1    30    30
browser |    30  100.0%         20     +  45646710  45646739              DQ580661     1    30    30
browser |    30  100.0%         20     -  53853872  53853901              DQ580661     1    30    30
browser |    30  100.0%         20     +  61654357  61654386              DQ580661     1    30    30
browser |    30  100.0%         21     +   9594456   9594485              DQ580661     1    30    30
browser |    30  100.0%         21     +  17293015  17293044              DQ580661     1    30    30
browser |    30  100.0%         21     +  25696320  25696349              DQ580661     1    30    30
browser |    30  100.0%         21     -  28563266  28563295              DQ580661     1    30    30
browser |    29  100.0%         21     -  39156685  39156713              DQ580661     2    30    30
browser |    30  100.0%         21     -  44824138  44824167              DQ580661     1    30    30
browser |    30  100.0%         21     -  45784517  45784546              DQ580661     1    30    30
browser |    30  100.0%  21_KI270874v1_alt     +    149325    149354              DQ580661     1    30    30
browser |    30  100.0%         22     -  17560686  17560715              DQ580661     1    30    30
browser |    30  100.0%         22     +  18042290  18042319              DQ580661     1    30    30
browser |    30  100.0%         22     -  19083775  19083804              DQ580661     1    30    30
browser |    30  100.0%         22     +  21677629  21677658              DQ580661     1    30    30
browser |    30  100.0%         22     +  21884713  21884742              DQ580661     1    30    30
browser |    30  100.0%         22     +  24065936  24065965              DQ580661     1    30    30
browser |    30  100.0%         22     +  24318453  24318482              DQ580661     1    30    30
browser |    30  100.0%         22     +  25278554  25278583              DQ580661     1    30    30
browser |    30  100.0%         22     +  31593917  31593946              DQ580661     1    30    30
browser |    30  100.0%         22     +  34626909  34626938              DQ580661     1    30    30
browser |    30  100.0%         22     +  34685207  34685236              DQ580661     1    30    30
browser |    30  100.0%         22     -  38806362  38806391              DQ580661     1    30    30
browser |    30  100.0%         22     +  41632060  41632089              DQ580661     1    30    30
browser |    29  100.0%  2_KQ983256v1_alt     +    281550    281578              DQ580661     2    30    30
browser |    30  100.0%          3     +   5243412   5243441              DQ580661     1    30    30
browser |    30  100.0%          3     -   8439108   8439137              DQ580661     1    30    30
browser |    30  100.0%          3     -   9559453   9559482              DQ580661     1    30    30
browser |    30  100.0%          3     -   9591354   9591383              DQ580661     1    30    30
browser |    30  100.0%          3     +   9940600   9940629              DQ580661     1    30    30
browser |    30  100.0%          3     -  10069518  10069547              DQ580661     1    30    30
browser |    30  100.0%          3     +  12850454  12850483              DQ580661     1    30    30
browser |    30  100.0%          3     -  15061272  15061301              DQ580661     1    30    30
browser |    30  100.0%          3     +  15164073  15164102              DQ580661     1    30    30
browser |    30  100.0%          3     +  20867722  20867751              DQ580661     1    30    30
browser |    30  100.0%          3     +  23872305  23872334              DQ580661     1    30    30
browser |    30  100.0%          3     -  32169147  32169176              DQ580661     1    30    30
browser |    30  100.0%          3     -  32663531  32663560              DQ580661     1    30    30
browser |    30  100.0%          3     -  41305287  41305316              DQ580661     1    30    30
browser |    30  100.0%          3     -  42797015  42797044              DQ580661     1    30    30
browser |    30  100.0%          3     -  46493969  46493998              DQ580661     1    30    30
browser |    30  100.0%          3     -  46963512  46963541              DQ580661     1    30    30
browser |    30  100.0%          3     -  47255816  47255845              DQ580661     1    30    30
browser |    30  100.0%          3     -  48055271  48055300              DQ580661     1    30    30
browser |    30  100.0%          3     -  48733563  48733592              DQ580661     1    30    30
browser |    30  100.0%          3     +  50312908  50312937              DQ580661     1    30    30
browser |    30  100.0%          3     +  51309516  51309545              DQ580661     1    30    30
browser |    30  100.0%          3     -  51858047  51858076              DQ580661     1    30    30
browser |    30  100.0%          3     +  56585024  56585053              DQ580661     1    30    30
browser |    30  100.0%          3     +  58291310  58291339              DQ580661     1    30    30
browser |    30  100.0%          3     +  58551053  58551082              DQ580661     1    30    30
browser |    30  100.0%          3     +  58891346  58891375              DQ580661     1    30    30
browser |    30  100.0%          3     -  75288765  75288794              DQ580661     1    30    30
browser |    30  100.0%          3     +  78584241  78584270              DQ580661     1    30    30
browser |    30  100.0%          3     +  98838968  98838997              DQ580661     1    30    30
browser |    30  100.0%          3     + 103255833 103255862              DQ580661     1    30    30
browser |    30  100.0%          3     + 108026817 108026846              DQ580661     1    30    30
browser |    30  100.0%          3     + 113047473 113047502              DQ580661     1    30    30
browser |    30  100.0%          3     - 117050102 117050131              DQ580661     1    30    30
browser |    30  100.0%          3     - 120413848 120413877              DQ580661     1    30    30
browser |    30  100.0%          3     - 121688242 121688271              DQ580661     1    30    30
browser |    30  100.0%          3     - 122163759 122163788              DQ580661     1    30    30
browser |    30  100.0%          3     + 122202350 122202379              DQ580661     1    30    30
browser |    30  100.0%          3     - 122746709 122746738              DQ580661     1    30    30
browser |    30  100.0%          3     + 122781487 122781516              DQ580661     1    30    30
browser |    30  100.0%          3     + 124368982 124369011              DQ580661     1    30    30
browser |    30  100.0%          3     + 124751280 124751309              DQ580661     1    30    30
browser |    30  100.0%          3     - 128953672 128953701              DQ580661     1    30    30
browser |    30  100.0%          3     + 129340730 129340759              DQ580661     1    30    30
browser |    30  100.0%          3     + 129364271 129364300              DQ580661     1    30    30
browser |    30  100.0%          3     - 131951619 131951648              DQ580661     1    30    30
browser |    30  100.0%          3     + 132472168 132472197              DQ580661     1    30    30
browser |    30  100.0%          3     - 136722748 136722777              DQ580661     1    30    30
browser |    30  100.0%          3     + 137199212 137199241              DQ580661     1    30    30
browser |    30  100.0%          3     + 143087520 143087549              DQ580661     1    30    30
browser |    30  100.0%          3     + 186812363 186812392              DQ580661     1    30    30
browser |    30  100.0%          3     - 186873315 186873344              DQ580661     1    30    30
browser |    30  100.0%          3     - 190472758 190472787              DQ580661     1    30    30
browser |    30  100.0%          3     + 195600397 195600426              DQ580661     1    30    30
browser |    30  100.0%          4     +   3539641   3539670              DQ580661     1    30    30
browser |    30  100.0%          4     -   6977177   6977206              DQ580661     1    30    30
browser |    30  100.0%          4     +  16394233  16394262              DQ580661     1    30    30
browser |    30  100.0%          4     +  28515710  28515739              DQ580661     1    30    30
browser |    30  100.0%          4     -  38806897  38806926              DQ580661     1    30    30
browser |    30  100.0%          4     +  40148383  40148412              DQ580661     1    30    30
browser |    29  100.0%          4     -  48291825  48291853              DQ580661     1    29    30
browser |    27  100.0%          4     +  48364800  48364826              DQ580661     4    30    30
browser |    30  100.0%          4     -  52464171  52464200              DQ580661     1    30    30
browser |    30  100.0%          4     +  53239282  53239311              DQ580661     1    30    30
browser |    30  100.0%          4     +  53256797  53256826              DQ580661     1    30    30
browser |    30  100.0%          4     -  54032322  54032351              DQ580661     1    30    30
browser |    30  100.0%          4     +  54326443  54326472              DQ580661     1    30    30
browser |    30  100.0%          4     +  56694220  56694249              DQ580661     1    30    30
browser |    30  100.0%          4     -  69761417  69761446              DQ580661     1    30    30
browser |    30  100.0%          4     +  77984696  77984725              DQ580661     1    30    30
browser |    30  100.0%          4     -  83181533  83181562              DQ580661     1    30    30
browser |    30  100.0%          4     -  94157341  94157370              DQ580661     1    30    30
browser |    30  100.0%          4     + 109598528 109598557              DQ580661     1    30    30
browser |    29  100.0%          4     + 112958527 112958555              DQ580661     2    30    30
browser |    30  100.0%          4     + 123017054 123017083              DQ580661     1    30    30
browser |    30  100.0%          4     + 128084557 128084586              DQ580661     1    30    30
browser |    30  100.0%          4     + 159940576 159940605              DQ580661     1    30    30
browser |    30  100.0%          4     - 174691446 174691475              DQ580661     1    30    30
browser |    30  100.0%          4     + 183041582 183041611              DQ580661     1    30    30
browser |    30  100.0%          5     -   1585466   1585495              DQ580661     1    30    30
browser |    30  100.0%          5     +  16277781  16277810              DQ580661     1    30    30
browser |    30  100.0%          5     -  18309040  18309069              DQ580661     1    30    30
browser |    30  100.0%          5     +  34307631  34307660              DQ580661     1    30    30
browser |    30  100.0%          5     +  37416441  37416470              DQ580661     1    30    30
browser |    30  100.0%          5     +  37484487  37484516              DQ580661     1    30    30
browser |    30  100.0%          5     +  37564459  37564488              DQ580661     1    30    30
browser |    30  100.0%          5     -  42979889  42979918              DQ580661     1    30    30
browser |    30  100.0%          5     -  43510497  43510526              DQ580661     1    30    30
browser |    30  100.0%          5     -  43521557  43521586              DQ580661     1    30    30
browser |    30  100.0%          5     +  43579081  43579110              DQ580661     1    30    30
browser |    30  100.0%          5     -  45890032  45890061              DQ580661     1    30    30
browser |    29  100.0%          5     -  54380837  54380865              DQ580661     2    30    30
browser |    30  100.0%          5     +  56015905  56015934              DQ580661     1    30    30
browser |    29  100.0%          5     +  62514525  62514553              DQ580661     2    30    30
browser |    30  100.0%          5     -  65939603  65939632              DQ580661     1    30    30
browser |    30  100.0%          5     +  69063629  69063658              DQ580661     1    30    30
browser |    30  100.0%          5     +  69516429  69516458              DQ580661     1    30    30
browser |    30  100.0%          5     +  71552752  71552781              DQ580661     1    30    30
browser |    30  100.0%          5     -  76811661  76811690              DQ580661     1    30    30
browser |    30  100.0%          5     -  78096067  78096096              DQ580661     1    30    30
browser |    30  100.0%          5     +  78391939  78391968              DQ580661     1    30    30
browser |    30  100.0%          5     -  80300627  80300656              DQ580661     1    30    30
browser |    30  100.0%          5     -  82138909  82138938              DQ580661     1    30    30
browser |    30  100.0%          5     +  90596722  90596751              DQ580661     1    30    30
browser |    30  100.0%          5     + 108560062 108560091              DQ580661     1    30    30
browser |    30  100.0%          5     + 108993471 108993500              DQ580661     1    30    30
browser |    30  100.0%          5     - 109340707 109340736              DQ580661     1    30    30
browser |    30  100.0%          5     + 122914042 122914071              DQ580661     1    30    30
browser |    30  100.0%          5     + 132983863 132983892              DQ580661     1    30    30
browser |    30  100.0%          5     + 134882772 134882801              DQ580661     1    30    30
browser |    30  100.0%          5     + 138811851 138811880              DQ580661     1    30    30
browser |    30  100.0%          5     - 139055727 139055756              DQ580661     1    30    30
browser |    30  100.0%          5     - 139111901 139111930              DQ580661     1    30    30
browser |    30  100.0%          5     - 139169923 139169952              DQ580661     1    30    30
browser |    30  100.0%          5     - 139223934 139223963              DQ580661     1    30    30
browser |    30  100.0%          5     + 142077264 142077293              DQ580661     1    30    30
browser |    30  100.0%          5     + 151714778 151714807              DQ580661     1    30    30
browser |    30  100.0%          5     - 157013599 157013628              DQ580661     1    30    30
browser |    30  100.0%          5     - 157419005 157419034              DQ580661     1    30    30
browser |    30  100.0%          5     - 158581854 158581883              DQ580661     1    30    30
browser |    30  100.0%          5     + 168644350 168644379              DQ580661     1    30    30
browser |    30  100.0%          5     + 176253071 176253100              DQ580661     1    30    30
browser |    30  100.0%          5     - 176304254 176304283              DQ580661     1    30    30
browser |    30  100.0%          5     - 176960698 176960727              DQ580661     1    30    30
browser |    30  100.0%          5     + 179835618 179835647              DQ580661     1    30    30
browser |    30  100.0%  5_GL339449v2_alt     +    299329    299358              DQ580661     1    30    30
browser |    30  100.0%  5_GL339449v2_alt     +   1551237   1551266              DQ580661     1    30    30
browser |    30  100.0%  5_KI270897v1_alt     +   1082727   1082756              DQ580661     1    30    30
browser |    30  100.0%  5_KV575244v1_fix     +    601178    601207              DQ580661     1    30    30
browser |    30  100.0%          6     +   5836580   5836609              DQ580661     1    30    30
browser |    30  100.0%          6     +  15416620  15416649              DQ580661     1    30    30
browser |    30  100.0%          6     +  15727249  15727278              DQ580661     1    30    30
browser |    30  100.0%          6     +  17736410  17736439              DQ580661     1    30    30
browser |    30  100.0%          6     -  22835791  22835820              DQ580661     1    30    30
browser |    30  100.0%          6     +  25586886  25586915              DQ580661     1    30    30
browser |    30  100.0%          6     +  27486371  27486400              DQ580661     1    30    30
browser |    30  100.0%          6     -  29932120  29932149              DQ580661     1    30    30
browser |    30  100.0%          6     -  30474538  30474567              DQ580661     1    30    30
browser |    30  100.0%          6     +  31456435  31456464              DQ580661     1    30    30
browser |    30  100.0%          6     +  31855289  31855318              DQ580661     1    30    30
browser |    30   96.7%          6     -  32531600  32531629              DQ580661     1    30    30
browser |    30  100.0%          6     +  32596719  32596748              DQ580661     1    30    30
browser |    30  100.0%          6     +  33833478  33833507              DQ580661     1    30    30
browser |    30  100.0%          6     -  35339802  35339831              DQ580661     1    30    30
browser |    30  100.0%          6     +  47506723  47506752              DQ580661     1    30    30
browser |    30  100.0%          6     +  55910919  55910948              DQ580661     1    30    30
browser |    30  100.0%          6     -  56824065  56824094              DQ580661     1    30    30
browser |    30  100.0%          6     +  71267327  71267356              DQ580661     1    30    30
browser |    30  100.0%          6     +  73661631  73661660              DQ580661     1    30    30
browser |    30  100.0%          6     +  73851885  73851914              DQ580661     1    30    30
browser |    30  100.0%          6     +  74255897  74255926              DQ580661     1    30    30
browser |    30  100.0%          6     -  76743721  76743750              DQ580661     1    30    30
browser |    30  100.0%          6     -  88946711  88946740              DQ580661     1    30    30
browser |    30  100.0%          6     -  99141433  99141462              DQ580661     1    30    30
browser |    30  100.0%          6     +  99650964  99650993              DQ580661     1    30    30
browser |    30  100.0%          6     + 105854820 105854849              DQ580661     1    30    30
browser |    30  100.0%          6     - 107802800 107802829              DQ580661     1    30    30
browser |    30  100.0%          6     - 108269271 108269300              DQ580661     1    30    30
browser |    30  100.0%          6     - 109046150 109046179              DQ580661     1    30    30
browser |    30  100.0%          6     + 112529099 112529128              DQ580661     1    30    30
browser |    30  100.0%          6     - 117750445 117750474              DQ580661     1    30    30
browser |    30  100.0%          6     + 122850222 122850251              DQ580661     1    30    30
browser |    29  100.0%          6     + 125390060 125390088              DQ580661     2    30    30
browser |    30  100.0%          6     - 125770256 125770285              DQ580661     1    30    30
browser |    30  100.0%          6     + 144434275 144434304              DQ580661     1    30    30
browser |    30  100.0%          6     - 151449705 151449734              DQ580661     1    30    30
browser |    30  100.0%          6     - 156669692 156669721              DQ580661     1    30    30
browser |    30  100.0%          6     - 162338319 162338348              DQ580661     1    30    30
browser |    30  100.0%  6_GL000250v2_alt     +   3187905   3187934              DQ580661     1    30    30
browser |    30  100.0%  6_GL000251v2_alt     -   1954274   1954303              DQ580661     1    30    30
browser |    30  100.0%  6_GL000251v2_alt     +   3332705   3332734              DQ580661     1    30    30
browser |    30   96.7%  6_GL000251v2_alt     +   3410475   3410504              DQ580661     1    30    30
browser |    30   96.7%  6_GL000251v2_alt     +   3454403   3454432              DQ580661     1    30    30
browser |    30  100.0%  6_GL000252v2_alt     -   1730414   1730443              DQ580661     1    30    30
browser |    30  100.0%  6_GL000252v2_alt     +   3103067   3103096              DQ580661     1    30    30
browser |    30   96.7%  6_GL000252v2_alt     +   3180827   3180856              DQ580661     1    30    30
browser |    30   96.7%  6_GL000252v2_alt     +   3224750   3224779              DQ580661     1    30    30
browser |    29   96.6%  6_GL000252v2_alt     +   3627133   3627161              DQ580661     1    29    30
browser |    30  100.0%  6_GL000253v2_alt     -   1784773   1784802              DQ580661     1    30    30
browser |    30  100.0%  6_GL000253v2_alt     +   3160505   3160534              DQ580661     1    30    30
browser |    30   96.7%  6_GL000253v2_alt     -   4074615   4074644              DQ580661     1    30    30
browser |    30  100.0%  6_GL000254v2_alt     +   3197359   3197388              DQ580661     1    30    30
browser |    30   96.7%  6_GL000254v2_alt     +   3319013   3319042              DQ580661     1    30    30
browser |    30  100.0%  6_GL000255v2_alt     -   1729637   1729666              DQ580661     1    30    30
browser |    30  100.0%  6_GL000255v2_alt     +   3111261   3111290              DQ580661     1    30    30
browser |    30   96.7%  6_GL000255v2_alt     +   3189022   3189051              DQ580661     1    30    30
browser |    30   96.7%  6_GL000255v2_alt     +   3232947   3232976              DQ580661     1    30    30
browser |    30  100.0%  6_GL000256v2_alt     -   1775316   1775345              DQ580661     1    30    30
browser |    30  100.0%  6_GL000256v2_alt     +   3156516   3156545              DQ580661     1    30    30
browser |    30   96.7%  6_GL000256v2_alt     +   3234237   3234266              DQ580661     1    30    30
browser |    30   96.7%  6_GL000256v2_alt     +   3278165   3278194              DQ580661     1    30    30
browser |    30  100.0%          7     -   1037311   1037340              DQ580661     1    30    30
browser |    30  100.0%          7     -   1069416   1069445              DQ580661     1    30    30
browser |    30  100.0%          7     -   2267379   2267408              DQ580661     1    30    30
browser |    30  100.0%          7     -   2302159   2302188              DQ580661     1    30    30
browser |    30  100.0%          7     +   6672361   6672390              DQ580661     1    30    30
browser |    30  100.0%          7     -   8890016   8890045              DQ580661     1    30    30
browser |    30  100.0%          7     -  13102010  13102039              DQ580661     1    30    30
browser |    30  100.0%          7     -  22800303  22800332              DQ580661     1    30    30
browser |    30  100.0%          7     +  23047308  23047337              DQ580661     1    30    30
browser |    30  100.0%          7     -  26147552  26147581              DQ580661     1    30    30
browser |    30  100.0%          7     -  26261321  26261350              DQ580661     1    30    30
browser |    30  100.0%          7     -  27044137  27044166              DQ580661     1    30    30
browser |    30  100.0%          7     -  27986712  27986741              DQ580661     1    30    30
browser |    30  100.0%          7     -  28838248  28838277              DQ580661     1    30    30
browser |    30  100.0%          7     -  47958878  47958907              DQ580661     1    30    30
browser |    30  100.0%          7     -  50459013  50459042              DQ580661     1    30    30
browser |    30  100.0%          7     +  54668655  54668684              DQ580661     1    30    30
browser |    30  100.0%          7     +  55221111  55221140              DQ580661     1    30    30
browser |    30  100.0%          7     -  55311278  55311307              DQ580661     1    30    30
browser |    30  100.0%          7     +  55403375  55403404              DQ580661     1    30    30
browser |    30  100.0%          7     +  62600581  62600610              DQ580661     1    30    30
browser |    30  100.0%          7     -  64717380  64717409              DQ580661     1    30    30
browser |    30  100.0%          7     +  64810379  64810408              DQ580661     1    30    30
browser |    30  100.0%          7     +  64969002  64969031              DQ580661     1    30    30
browser |    30  100.0%          7     +  73285246  73285275              DQ580661     1    30    30
browser |    30  100.0%          7     +  75953251  75953280              DQ580661     1    30    30
browser |    30  100.0%          7     +  88267326  88267355              DQ580661     1    30    30
browser |    30  100.0%          7     -  99426245  99426275              DQ580661     1    30    30
browser |    30  100.0%          7     +  99889141  99889170              DQ580661     1    30    30
browser |    30  100.0%          7     + 100742788 100742817              DQ580661     1    30    30
browser |    30  100.0%          7     - 101091844 101091873              DQ580661     1    30    30
browser |    30  100.0%          7     + 101360228 101360257              DQ580661     1    30    30
browser |    30  100.0%          7     + 105411677 105411706              DQ580661     1    30    30
browser |    30  100.0%          7     - 111609366 111609395              DQ580661     1    30    30
browser |    30  100.0%          7     - 112551075 112551104              DQ580661     1    30    30
browser |    30  100.0%          7     - 112922012 112922041              DQ580661     1    30    30
browser |    30  100.0%          7     + 128577624 128577653              DQ580661     1    30    30
browser |    30  100.0%          7     - 132984119 132984148              DQ580661     1    30    30
browser |    30  100.0%          7     - 139100899 139100928              DQ580661     1    30    30
browser |    30  100.0%          7     + 147802708 147802737              DQ580661     1    30    30
browser |    30  100.0%          7     - 150197911 150197940              DQ580661     1    30    30
browser |    30  100.0%          7     + 153316091 153316120              DQ580661     1    30    30
browser |    30  100.0%          8     -   5724775   5724804              DQ580661     1    30    30
browser |    30  100.0%          8     +   9154808   9154837              DQ580661     1    30    30
browser |    30  100.0%          8     -  11329370  11329399              DQ580661     1    30    30
browser |    30  100.0%          8     +  21712939  21712968              DQ580661     1    30    30
browser |    30  100.0%          8     +  33659155  33659184              DQ580661     1    30    30
browser |    30  100.0%          8     +  34530128  34530157              DQ580661     1    30    30
browser |    30  100.0%          8     -  37927180  37927209              DQ580661     1    30    30
browser |    30  100.0%          8     +  41627198  41627227              DQ580661     1    30    30
browser |    30  100.0%          8     +  42940414  42940443              DQ580661     1    30    30
browser |    30  100.0%          8     +  43033907  43033936              DQ580661     1    30    30
browser |    30  100.0%          8     +  43688572  43688601              DQ580661     1    30    30
browser |    30  100.0%          8     -  51158507  51158536              DQ580661     1    30    30
browser |    30  100.0%          8     +  56105543  56105572              DQ580661     1    30    30
browser |    29  100.0%          8     -  57021290  57021318              DQ580661     2    30    30
browser |    30  100.0%          8     +  58677181  58677210              DQ580661     1    30    30
browser |    30  100.0%          8     +  61754003  61754032              DQ580661     1    30    30
browser |    30  100.0%          8     -  65616189  65616218              DQ580661     1    30    30
browser |    30  100.0%          8     -  65662154  65662183              DQ580661     1    30    30
browser |    30  100.0%          8     +  67168229  67168258              DQ580661     1    30    30
browser |    30  100.0%          8     -  67310164  67310193              DQ580661     1    30    30
browser |    30  100.0%          8     +  86695229  86695258              DQ580661     1    30    30
browser |    30  100.0%          8     +  99029708  99029737              DQ580661     1    30    30
browser |    30  100.0%          8     + 141203082 141203111              DQ580661     1    30    30
browser |    30  100.0%          8     + 142856909 142856938              DQ580661     1    30    30
browser |    30  100.0%  8_KV880766v1_fix     +     50062     50091              DQ580661     1    30    30
browser |    30  100.0%  8_KZ208915v1_fix     +   2017446   2017475              DQ580661     1    30    30
browser |    30  100.0%  8_KZ208915v1_fix     -   4196743   4196772              DQ580661     1    30    30
browser |    30  100.0%          9     -  15405893  15405922              DQ580661     1    30    30
browser |    30  100.0%          9     +  29189944  29189973              DQ580661     1    30    30
browser |    30  100.0%          9     -  38324092  38324121              DQ580661     1    30    30
browser |    30  100.0%          9     +  72807185  72807214              DQ580661     1    30    30
browser |    30  100.0%          9     +  72842293  72842322              DQ580661     1    30    30
browser |    30  100.0%          9     -  74196901  74196930              DQ580661     1    30    30
browser |    30  100.0%          9     -  76954920  76954949              DQ580661     1    30    30
browser |    30  100.0%          9     +  77061535  77061564              DQ580661     1    30    30
browser |    30  100.0%          9     -  77760263  77760292              DQ580661     1    30    30
browser |    30  100.0%          9     -  81709607  81709636              DQ580661     1    30    30
browser |    30  100.0%          9     -  83803309  83803338              DQ580661     1    30    30
browser |    30  100.0%          9     -  85573160  85573189              DQ580661     1    30    30
browser |    30  100.0%          9     +  87759826  87759855              DQ580661     1    30    30
browser |    30  100.0%          9     +  88245875  88245904              DQ580661     1    30    30
browser |    30  100.0%          9     - 100067247 100067276              DQ580661     1    30    30
browser |    30  100.0%          9     + 107258429 107258458              DQ580661     1    30    30
browser |    30  100.0%          9     - 107775423 107775452              DQ580661     1    30    30
browser |    30  100.0%          9     + 110098093 110098122              DQ580661     1    30    30
browser |    30  100.0%          9     - 111639993 111640022              DQ580661     1    30    30
browser |    30  100.0%          9     - 122866461 122866490              DQ580661     1    30    30
browser |    30  100.0%          9     + 125459747 125459776              DQ580661     1    30    30
browser |    30  100.0%          9     - 125622863 125622892              DQ580661     1    30    30
browser |    30  100.0%          9     - 128779574 128779603              DQ580661     1    30    30
browser |    30  100.0%          9     + 130507288 130507317              DQ580661     1    30    30
browser |    30  100.0%          9     - 134075216 134075245              DQ580661     1    30    30
browser |    30  100.0%  Un_KI270744v1     -     70833     70862              DQ580661     1    30    30
browser |    30  100.0%  Un_KI270750v1     +     97940     97969              DQ580661     1    30    30
browser |    30  100.0%          X     +  14303392  14303421              DQ580661     1    30    30
browser |    30  100.0%          X     +  30754698  30754727              DQ580661     1    30    30
browser |    30  100.0%          X     +  37708138  37708167              DQ580661     1    30    30
browser |    30  100.0%          X     -  39276945  39276974              DQ580661     1    30    30
browser |    30  100.0%          X     +  42474905  42474934              DQ580661     1    30    30
browser |    30  100.0%          X     -  46274776  46274805              DQ580661     1    30    30
browser |    30  100.0%          X     -  48221845  48221874              DQ580661     1    30    30
browser |    30  100.0%          X     -  51279353  51279382              DQ580661     1    30    30
browser |    30  100.0%          X     +  52827709  52827738              DQ580661     1    30    30
browser |    30  100.0%          X     -  53966288  53966317              DQ580661     1    30    30
browser |    30  100.0%          X     -  55747924  55747953              DQ580661     1    30    30
browser |    30  100.0%          X     +  63826250  63826279              DQ580661     1    30    30
browser |    30  100.0%          X     +  71342462  71342491              DQ580661     1    30    30
browser |    30  100.0%          X     -  74165767  74165796              DQ580661     1    30    30
browser |    28  100.0%          X     +  74413287  74413314              DQ580661     3    30    30
browser |    30  100.0%          X     +  76219142  76219171              DQ580661     1    30    30
browser |    30  100.0%          X     -  77278759  77278788              DQ580661     1    30    30
browser |    30  100.0%          X     +  77767152  77767181              DQ580661     1    30    30
browser |    30  100.0%          X     +  77932837  77932866              DQ580661     1    30    30
browser |    29  100.0%          X     +  78266373  78266401              DQ580661     2    30    30
browser |    30  100.0%          X     +  80397861  80397890              DQ580661     1    30    30
browser |    30  100.0%          X     -  80590445  80590474              DQ580661     1    30    30
browser |    30  100.0%          X     -  80712205  80712234              DQ580661     1    30    30
browser |    30  100.0%          X     +  97276209  97276238              DQ580661     1    30    30
browser |    30  100.0%          X     - 100723176 100723205              DQ580661     1    30    30
browser |    30  100.0%          X     - 119361452 119361481              DQ580661     1    30    30
browser |    30  100.0%          X     - 126640810 126640839              DQ580661     1    30    30
browser |    27  100.0%          X     - 129849838 129849864              DQ580661     4    30    30
browser |    30  100.0%          X     - 134838750 134838779              DQ580661     1    30    30
browser |    30  100.0%          X     - 134959796 134959825              DQ580661     1    30    30
browser |    30  100.0%          X     + 137001600 137001629              DQ580661     1    30    30
browser |    30  100.0%          X     - 145435683 145435712              DQ580661     1    30    30
browser |    30  100.0%          X     + 147993338 147993367              DQ580661     1    30    30
browser |    30  100.0%          X     - 149420195 149420224              DQ580661     1    30    30
browser |    30  100.0%          Y     -  12878189  12878218              DQ580661     1    30    30

View details of parts of alignment within browser window
.
View table schema

Go to Human mRNAs track controls

Data last updated: 2019-10-03


p12 Note: Includes annotations on GRCh38.p12 patch sequences

Description

The mRNA track shows alignments between human mRNAs in GenBank and the genome.

Display Conventions and Configuration

This track follows the display conventions for PSL alignment tracks. In dense display mode, the items that are more darkly shaded indicate matches of better quality.

The description page for this track has a filter that can be used to change the display mode, alter the color, and include/exclude a subset of items within the track. This may be helpful when many items are shown in the track display, especially when only some are relevant to the current task.

To use the filter:

  1. Type a term in one or more of the text boxes to filter the mRNA display. For example, to apply the filter to all mRNAs expressed in a specific organ, type the name of the organ in the tissue box. To view the list of valid terms for each text box, consult the table in the Table Browser that corresponds to the factor on which you wish to filter. For example, the "tissue" table contains all the types of tissues that can be entered into the tissue text box. Multiple terms may be entered at once, separated by a space. Wildcards may also be used in the filter.
  2. If filtering on more than one value, choose the desired combination logic. If "and" is selected, only mRNAs that match all filter criteria will be highlighted. If "or" is selected, mRNAs that match any one of the filter criteria will be highlighted.
  3. Choose the color or display characteristic that should be used to highlight or include/exclude the filtered items. If "exclude" is chosen, the browser will not display mRNAs that match the filter criteria. If "include" is selected, the browser will display only those mRNAs that match the filter criteria.

This track may also be configured to display codon coloring, a feature that allows the user to quickly compare mRNAs against the genomic sequence. For more information about this option, go to the Codon and Base Coloring for Alignment Tracks page. Several types of alignment gap may also be colored; for more information, go to the Alignment Insertion/Deletion Display Options page.

Methods

GenBank human mRNAs were aligned against the genome using the blat program. When a single mRNA aligned in multiple places, the alignment having the highest base identity was found. Only alignments having a base identity level within 0.5% of the best and at least 96% base identity with the genomic sequence were kept.

Credits

The mRNA track was produced at UCSC from mRNA sequence data submitted to the international public sequence databases by scientists worldwide.

References

Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42. PMID: 23193287; PMC: PMC3531190

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank: update. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6. PMID: 14681350; PMC: PMC308779

Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64. PMID: 11932250; PMC: PMC187518