Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 135 in window, 76384120 - 76384150, 31 bps 
B D                     Human  ggtgg------gc------tagg-------gc------------a-------------------------
B D                     Chimp  ggtgg------gc------tagg-------gc------------a-------------------------
B D                   Gorilla  ggtgg------gc------tagg-------gc------------a-------------------------
B D                    Gibbon  ggtgg------gc------tagg-------gc------------a-------------------------
B D       Crab-eating macaque  ggtgg------gc------tggg-------gc------------a-------------------------
B D                    Baboon  ggtgg------gc------tggg-------gc------------a-------------------------
B D              Green monkey  ggtgg------gc------tggg-------gc------------a-------------------------
B D                  Marmoset  ggtgg------gc------tggg-------gc------------c-------------------------
B D           Squirrel monkey  ggtgg------gc------tggg-------gc------------c-------------------------
B D                  Bushbaby  cgt-g------gc------tgga-------gc------------a-------------------------
B D                  Squirrel  -tccg------gg------tggg-----------------------------------------------
       Lesser Egyptian jerboa  ---gg------ga------cagg-------gc------------t-------------------------
                 Prairie vole  atcag------gc------tagg-------gc------------t-------------------------
B D           Chinese hamster  gtcag------gc------cggg-------gc------------t-------------------------
               Golden hamster  atcag------gc------tggggcta---gc------------t-------------------------
B D                     Mouse  -tcag------gc------tagg-------tc------------t-------------------------
B D                       Rat  atcag------gc------tagg-------gt------------c-------------------------
B D            Naked mole-rat  gt-gg------gc------tggg-------gc--------------------------------------
B D                Guinea pig  gt-gg------tc------tggg-------ac--------------------------------------
                   Chinchilla  ct-gg------gt------tggg-------gc--------------------------------------
             Brush-tailed rat  gt-gg------gc------tggg-------gc--------------------------------------
B D                    Rabbit  gt-gg------gc------tagg---------------------c-------------------------
B D                      Pika  gg--------------------------------------------------------------------
B D                       Pig  ggtgg------ga------tggg-------gc------------g-------------------------
B D                    Alpaca  gggg------------------------------------------------------------------
B D                   Dolphin  ggtgg------ga------tggg-------gc------------g-------------------------
                 Killer whale  ggtgg------ga------tggg-------gc------------g-------------------------
B D                       Cow  ggtgg------ga------ttgg-------gg------------g-------------------------
B D                     Horse  gggga------gc------ttgg-------gc------------g-------------------------
B D          White rhinoceros  agcgg------gc------tggg-------gt------------g-------------------------
B D                       Dog  -gtgg------gc------tggg-------gc------------g-------------------------
B D                     Panda  -ttgg------gc------tggg-------gc------------g-------------------------
               Pacific walrus  -gtgg------ac------tggg-------gc------------g-------------------------
                 Weddell seal  -gggg------ac------tggg-------gc------------g-------------------------
             Black flying-fox  ggtgg------gc------tgga-------gc------------g-------------------------
B D                   Megabat  ggtgg------gc------tgga-------gc------------g-------------------------
                Big brown bat  agtgg------gc------tgga-------gc------------c-------------------------
B D                  Microbat  caatg------gt------tgga-------ga------------t-------------------------
B D                  Hedgehog  ggcgg------gc------gggg-------g---------------------------------------
B D                  Elephant  ggtgg------gt------tgga-------gc------------c-------------------------
          Cape elephant shrew  ggtct------tt------ttga-------gc------------c-------------------------
             Cape golden mole  ggtga------ctagacggtaga-------gc------------t-------------------------
                     Aardvark  ggagg------gc------tagg-------gc------------c-------------------------
B D                 Armadillo  ggtgg------ac------tggg-------gc------------c-------------------------
B D                   Opossum  tcccg------gc------ccaa-------gc------------a-------------------------
B D           Tasmanian devil  tccct------gc------agat-------cc------------t-------------------------
B D                  Platypus  cgtgt------ac------cggg-------gc------------cccgccgccgctttcccacacgcttc
  D               Rock pigeon  gaggg------ac------cagg-------ga------------a-------------------------
  D              Saker falcon  aatca------cc------tggt-------gt------------a-------------------------
  D          Peregrine falcon  aatca------cc------tggt-------gc------------a-------------------------
  D       Collared flycatcher  gagcc-------g------cggt-------gg------------g-------------------------
B D               Zebra finch  aagcc------gg------cggt-------gg------------g-------------------------
B D                Budgerigar  ggaat------ga------tgtggctggttgg------------a-------------------------
  D                    Parrot  gggtt------gg------tggg-------gg------------a-------------------------
  D             Scarlet macaw  gggtt------gg------tggg-------gg------------a-------------------------
  D              Mallard duck  gggat------gc------tgcg-------gccggcgttgcgcaa-------------------------
B D                    Turkey  gtact------gc------cgca-------gc------------a-------------------------
B D        American alligator  gtggc------ag------tgtc-------ac------------a-------------------------
  D            Painted turtle  gcccctcccttgg------ctca-------gg------------t-------------------------
  D    Spiny softshell turtle  gacca------gg------ctct-------gg------------g-------------------------
B D                 Tetraodon  tccgg------ga------tgga-------ga------------a-------------------------
B D                      Fugu  tccgg------ga------tgga-------ga------------a-------------------------
B D                    Tenrec  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ======================================================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ======================================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================================================
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
          Tibetan ground jay  ======================================================================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -g-------agcgc------------------------------gcaa----a---------------ag
                        Chimp  -g-------agcgc------------------------------gcaa----a---------------ag
                      Gorilla  -g-------agcgc------------------------------gcaa----a---------------ag
                       Gibbon  -g-------agcgc------------------------------gcaa----a---------------ag
          Crab-eating macaque  -g-------agcgc------------------------------gaaa----a---------------ag
                       Baboon  -g-------agcgc------------------------------gaaa----a---------------ag
                 Green monkey  -g-------agcgc------------------------------gaaa----a---------------ag
                     Marmoset  gc-------ggcgc------------------------------gcaa----a---------------gg
              Squirrel monkey  ---------------------------------------------------------------------g
                     Bushbaby  -g-------ggcgc------------------------------gcta----g---------------gg
                     Squirrel  -----------cgt------------------------------gcga----a---------------gg
       Lesser Egyptian jerboa  ag-------gcgg----------------------------------a----g---------------ag
                 Prairie vole  ag-------gcgat------------------------------gcca----a---------------ag
              Chinese hamster  ag-------gcgac------------------------------gcca----a---------------ag
               Golden hamster  ag-------gcgac------------------------------gcca----a---------------ag
                        Mouse  aa-------gcgac------------------------------gcca----a---------------ag
                          Rat  ag-------gggac------------------------------gcca----a---------------ag
               Naked mole-rat  --------------------------------------------------------------------gg
                   Guinea pig  --------------------------------------------------------------------ag
                   Chinchilla  --------------------------------------------------------------------ag
             Brush-tailed rat  --------------------------------------------------------------------ga
                       Rabbit  ag-------ggtgc------------------------------gcca----a---------------ag
                         Pika  --------------------------------------------gcca----a---------------gc
                          Pig  -g-------agcgc------------------------------gcga----a---------------gg
                       Alpaca  ------------gc------------------------------gcga----a---------------gg
                      Dolphin  -g-------agcgc------------------------------gcga----a---------------gc
                 Killer whale  -g-------agcgc------------------------------gcga----a---------------gc
                          Cow  -g-------cgcg---------------------------------------------------------
                        Horse  -g-------ggtgc------------------------------gcga----a---------------gg
             White rhinoceros  -g-------ggcgt------------------------------ggga----a---------------gg
                          Dog  -c-------agcgc------------------------------gcga----c---------------gg
                        Panda  -g-------ggcgc------------------------------gcga----a---------------gg
               Pacific walrus  -g-------ggcgc------------------------------gcgc----a---------------gg
                 Weddell seal  -g-------ggcgc------------------------------gcga----a---------------gg
             Black flying-fox  -g-------ggcgc------------------------------gtga----a---------------gg
                      Megabat  -g-------ggcgc------------------------------gtga----c---------------gg
                Big brown bat  -g-------ggcgc------------------------------gtga----a---------------gg
                     Microbat  -g-------ggcgc------------------------------gtga----a---------------gg
                     Hedgehog  ----------------------------------------------------------------------
                     Elephant  -g----------gc------------------------------ctgc----g---------------ca
          Cape elephant shrew  ------------gc------------------------------cgag----t---------------ca
             Cape golden mole  ------------gc------------------------------agcg----c---------------ca
                     Aardvark  cg----------gc------------------------------cgcg----c---------------ag
                    Armadillo  cg-------cgcgc------------------------------ggag----g---------------cg
                      Opossum  gg-------cgtgc------------------------------gggc----g---------------ag
              Tasmanian devil  gg-------cctct------------------------------ggga----a---------------ga
                     Platypus  cg-------caggc------------------------------ccga----t---------------gg
                  Rock pigeon  -ggctccgcagagc------------------------------ggggaccag---------------gg
                 Saker falcon  -t----------gc------------------------------aggt----g---------------ga
             Peregrine falcon  -t----------gc------------------------------aggt----g---------------ga
          Collared flycatcher  -t-------cgggctgtgcccccagaccactgtgaggctcaaccgtgg----g---------------g-
                  Zebra finch  -a-------agggc----------------------------ctgagg----g---------------a-
                   Budgerigar  -g-------acggt------------------------------gtgg----gtttcaaaacagcattga
                       Parrot  -g-------aaagg------------------------------gggg----g---------------aa
                Scarlet macaw  -g-------aaaga------------------------------ggga----g---------------aa
                 Mallard duck  -g-------gggaa------------------------------ggga----t---------------g-
                       Turkey  -g-------ggggt------------------------------ccga----c---------------gt
           American alligator  -g-------gggga------------------------------cggg----g---------------a-
               Painted turtle  -t-------agtat------------------------------gaat----g---------------ga
       Spiny softshell turtle  -g-------gtgat------------------------------gaaa----t---------------gg
                    Tetraodon  -a-------gacgc------------------------------atcg----g---------------aa
                         Fugu  -a-------gacgc------------------------------atct----g---------------aa
                       Tenrec  ======================================================================
             Tibetan antelope  ======================================================================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Manatee  ======================================================================
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  ======================================================================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ======================================================================
                       Medaka  ======================================================================
                   Coelacanth  ======================================================================
                      Wallaby  ======================================================================
                       Lizard  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Atlantic cod  ======================================================================
     Chinese softshell turtle  ======================================================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  ======================================================================
              Green seaturtle  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
           Tibetan ground jay  ======================================================================
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gggc
                        Chimp  gggc
                      Gorilla  gggc
                       Gibbon  gggc
          Crab-eating macaque  gggc
                       Baboon  gggc
                 Green monkey  gggt
                     Marmoset  gggc
              Squirrel monkey  gggc
                     Bushbaby  gg--
                     Squirrel  agtc
       Lesser Egyptian jerboa  aggc
                 Prairie vole  aggc
              Chinese hamster  aggc
               Golden hamster  aggc
                        Mouse  aggc
                          Rat  aggc
               Naked mole-rat  gcgc
                   Guinea pig  gcgc
                   Chinchilla  gcgc
             Brush-tailed rat  gcgc
                       Rabbit  gggc
                         Pika  gggc
                          Pig  gggc
                       Alpaca  ggac
                      Dolphin  gggc
                 Killer whale  gggc
                          Cow  ----
                        Horse  ggac
             White rhinoceros  gggc
                          Dog  ----
                        Panda  ----
               Pacific walrus  ----
                 Weddell seal  ----
             Black flying-fox  gggt
                      Megabat  gggt
                Big brown bat  g---
                     Microbat  g---
                     Hedgehog  ----
                     Elephant  gggc
          Cape elephant shrew  ggga
             Cape golden mole  gcga
                     Aardvark  gggc
                    Armadillo  gcgc
                      Opossum  gg--
              Tasmanian devil  gc--
                     Platypus  ggac
                  Rock pigeon  ccag
                 Saker falcon  cagc
             Peregrine falcon  cagc
          Collared flycatcher  --tc
                  Zebra finch  ----
                   Budgerigar  gatt
                       Parrot  aatc
                Scarlet macaw  aatc
                 Mallard duck  ----
                       Turkey  catc
           American alligator  ---t
               Painted turtle  agtg
       Spiny softshell turtle  agac
                    Tetraodon  ccgg
                         Fugu  ccgg
                       Tenrec  ====
             Tibetan antelope  ====
                        Shrew  NNNN
         David's myotis (bat)  NNNN
                Domestic goat  ====
                        Sheep  ====
              Star-nosed mole  NNNN
                      Manatee  ====
           Chinese tree shrew  NNNN
                          Cat  NNNN
               Bactrian camel  ====
                      Ferret   NNNN
       Yellowbelly pufferfish  ====
                       Medaka  ====
                   Coelacanth  ====
                      Wallaby  ====
                       Lizard  ====
           Southern platyfish  ====
                      Chicken  ====
                 Atlantic cod  ====
     Chinese softshell turtle  ====
                       Rhesus  NNNN
                X. tropicalis  ====
              Green seaturtle  ====
          Medium ground finch  ====
       White-throated sparrow  ====
           Tibetan ground jay  ====
                    Orangutan  NNNN

Inserts between block 1 and 2 in window
B D          Tasmanian devil 23bp

Alignment block 2 of 135 in window, 76384151 - 76384156, 6 bps 
B D                     Human  gctgca--
B D                     Chimp  gctgca--
B D                   Gorilla  gctgca--
B D                    Gibbon  gctgca--
B D       Crab-eating macaque  gctgca--
B D                    Baboon  gctgca--
B D              Green monkey  gctgcc--
B D                  Marmoset  gctgca--
B D           Squirrel monkey  gctgca--
B D                  Squirrel  acggca--
       Lesser Egyptian jerboa  gctgca--
                 Prairie vole  gccgcc--
B D           Chinese hamster  gctgcc--
               Golden hamster  gctgcc--
B D                     Mouse  gctgca--
B D                       Rat  gctgcc--
B D            Naked mole-rat  gctgca--
B D                Guinea pig  actgca--
                   Chinchilla  cctgct--
             Brush-tailed rat  gctgca--
B D                    Rabbit  tctgca--
B D                      Pika  tcctca--
B D                       Pig  gctgct--
B D                    Alpaca  gctgca--
B D                   Dolphin  gctgct--
                 Killer whale  gctgct--
B D                     Horse  tctgta--
B D          White rhinoceros  gctgca--
             Black flying-fox  gctgca--
B D                   Megabat  gctgca--
B D                  Elephant  gctgca--
          Cape elephant shrew  gctaaa--
             Cape golden mole  aataaa--
                     Aardvark  gctgca--
B D                 Armadillo  ggtgcg--
B D                   Opossum  gcggca--
B D           Tasmanian devil  caggca--
B D                  Platypus  -cggga--
  D               Rock pigeon  ---ccc--
  D              Saker falcon  ---ccc--
  D          Peregrine falcon  ---ccc--
  D       Collared flycatcher  ---ccc--
B D                Budgerigar  ---cct--
  D                    Parrot  ---ccc--
  D             Scarlet macaw  ---ccc--
  D              Mallard duck  -----c--
B D                    Turkey  ---tcc--
B D        American alligator  ---gcc--
  D            Painted turtle  ---act--
  D    Spiny softshell turtle  ---acc--
B D                 Tetraodon  ---acccg
B D                      Fugu  ---accca
B D                    Tenrec  ========
B D                  Hedgehog  --------
            Tibetan antelope  ========
B D                     Shrew  NNNNNNNN
        David's myotis (bat)  NNNNNNNN
               Domestic goat  ========
B D                     Sheep  ========
B D                       Cow  --------
             Star-nosed mole  NNNNNNNN
B D                   Manatee  ========
          Chinese tree shrew  NNNNNNNN
              Pacific walrus  --------
B D                       Dog  --------
B D                       Cat  NNNNNNNN
B D                  Microbat  --------
B D                  Bushbaby  --------
               Big brown bat  --------
              Bactrian camel  ========
B D                     Panda  --------
B D                   Ferret   NNNNNNNN
                Weddell seal  --------
      Yellowbelly pufferfish  ========
B D                    Medaka  ========
B D                Coelacanth  ========
B D                   Wallaby  ========
B D                    Lizard  ========
          Southern platyfish  ========
B D                   Chicken  ========
B D              Atlantic cod  ========
  D  Chinese softshell turtle  ========
B D               Zebra finch  --------
B D                    Rhesus  NNNNNNNN
B D             X. tropicalis  ========
  D           Green seaturtle  ========
B D       Medium ground finch  ========
  D    White-throated sparrow  ========
          Tibetan ground jay  ========
B D                 Orangutan  NNNNNNNN

Inserts between block 2 and 3 in window
  D              Rock pigeon 4bp
  D             Saker falcon 4bp
  D         Peregrine falcon 4bp
  D      Collared flycatcher 4bp
B D               Budgerigar 6bp
  D             Mallard duck 10bp
B D                   Turkey 10bp
  D           Painted turtle 4bp
  D   Spiny softshell turtle 4bp

Alignment block 3 of 135 in window, 76384157 - 76384214, 58 bps 
B D                     Human  tcccggc-----------------------gccga------------cagca------c-cc--------
B D                     Chimp  tcccggc-----------------------gccga------------cagca------c-cc--------
B D                   Gorilla  tcccggc-----------------------gccgg------------cagca------c-cc--------
B D                    Gibbon  tcccggc-----------------------gccgg------------cagca------c-cc--------
B D       Crab-eating macaque  tcccggc-----------------------tccgg------------cagca------c-cc--------
B D                    Baboon  tcccggc-----------------------tccgg------------cagct------c-cc--------
B D              Green monkey  tcccggc-----------------------tccgg------------cagca------c-cc--------
B D                  Marmoset  acccggc-----------------------gcggg------------cagca------c-cc--------
B D           Squirrel monkey  actcggc-----------------------gcggg------------cagca------c-cc--------
B D                  Bushbaby  ---cggc-----------------------gcgggaggttctgcttacagca------c-ct--------
B D                  Squirrel  tcctggct----------------------tcgag------------cagcgaggacag-gtctgccggt
       Lesser Egyptian jerboa  tccctgat----------------------gcggg--gtggcgc---cggcg------g-atctgcaggc
                 Prairie vole  tccctact----------------------gtgag------------cagca------g-tt--------
B D           Chinese hamster  tccctgcg----------------------gtgag------------ccgcg------g-tt--------
               Golden hamster  tccctact----------------------gtgag------------cagcg------g-tt--------
B D                     Mouse  tccctact----------------------gtgaa------------cagca------g-tt--------
B D                       Rat  tccctact----------------------gtgag------------ccgcg------g-tt--------
B D            Naked mole-rat  tcccggct----------------------gcccg------------cagcg------c-gc--------
B D                Guinea pig  tcgcggct----------------------gcgag------------ccacg------c--g--------
                   Chinchilla  tcgtggct----------------------gctag------------cagcg------c-ag--------
             Brush-tailed rat  tcctggct----------------------gcctg------------ctgca------c-tc--------
B D                    Rabbit  ttcccgattct-------------------gcagg------------cagtg------c-cc--------
B D                      Pika  tccctgcctcccgcggcgtaa---------actgg------------tcgtc------a-cc--------
B D                       Pig  tgccgggcgcgggcggcggggcc-agttctgccag------------gagac------t-cc--------
B D                    Alpaca  cgtccgg---------------c-agttttggggg------------aagat------cccc--------
B D                   Dolphin  tgcccggagccgggagcggggcc-agttctgccag------------gagac------t-cc--------
                 Killer whale  tgcccggagccgggagcggggcc-agttctgccag------------gagac------t-cc--------
B D                       Cow  -----------ggcagcggggca-ggttccgccag------------gagac------t-----------
B D                     Horse  tgcccgccgcctgccgcgcgggt-agttatgcgga------------aagac------c-ct--------
B D          White rhinoceros  tgcccgttgcgggccgcgcgggtaagttctgcggg------------aagac------c-ct--------
B D                       Dog  --------------------------------ggg------------aagac------c-cc--------
B D                     Panda  --------------------------------ggg------------aagac------c-cc--------
               Pacific walrus  --------------------------------ggg------------aagac------c-cc--------
                 Weddell seal  --------------------------------ggg------------aagac------c-cc--------
             Black flying-fox  cgcccgccgcaggcagcacaggt-agttcttccgg------------gagac------c-cc--------
B D                   Megabat  cgcccgccgcaggcagcacaggc-agttcttccgg------------gagac------c-cc--------
                Big brown bat  ---------------------------------gg------------aagac------c-c---------
B D                  Microbat  ---------------------------------gg------------aagac------c-c---------
B D                  Hedgehog  --------------------------------gag------------ctgag------t-ct--------
B D                  Elephant  ----------------------------------------------------------------------
          Cape elephant shrew  ----------------------------------------------------------------------
             Cape golden mole  ----------------------------------------------------------------------
B D                 Armadillo  ----------------------------------------------------------------------
B D                   Opossum  ----------------------------------------------------------------------
B D           Tasmanian devil  ----------------------------------------------------------------------
B D                  Platypus  ----------------------------------------------------------------------
  D               Rock pigeon  ----------------------------------------------------------------------
  D              Saker falcon  ----------------------------------------------------------------------
  D          Peregrine falcon  ----------------------------------------------------------------------
  D       Collared flycatcher  ----------------------------------------------------------------------
B D               Zebra finch  ----------------------------------------------------------------------
B D                Budgerigar  ----------------------------------------------------------------------
  D                    Parrot  ----------------------------------------------------------------------
  D             Scarlet macaw  ----------------------------------------------------------------------
  D              Mallard duck  ----------------------------------------------------------------------
B D                    Turkey  ----------------------------------------------------------------------
B D        American alligator  ----------------------------------------------------------------------
  D            Painted turtle  ----------------------------------------------------------------------
  D    Spiny softshell turtle  ----------------------------------------------------------------------
B D                 Tetraodon  ----------------------------------------------------------------------
B D                      Fugu  ----------------------------------------------------------------------
B D                    Tenrec  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ======================================================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ======================================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
          Tibetan ground jay  ======================================================================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -------gcgggggc----------gagg------t-c-----gtggcgt---------c--gagg----
                        Chimp  -------gcgggggc----------gagg------t-c-----gtggcgt---------c--gagg----
                      Gorilla  -------gcgggggc----------gagg------t-c-----gtggcgt---------c--gagg----
                       Gibbon  -------gcgggggc----------gagg------t-c-----gtggcgt---------c--gagg----
          Crab-eating macaque  -------ggagcggc----------aagg------t-c-----gtggcgt---------c--gagg----
                       Baboon  -------ggagcggc----------aagg------t-c-----gtggcgt---------c--gagg----
                 Green monkey  -------ggagcggc----------aagg------t-c-----gtggcgt---------c--gagg----
                     Marmoset  -------ggagcggc----------gagg------t-c-----gcggcgt---------c--gagg----
              Squirrel monkey  -------ggggcggc----------gagg------t-c-----gcggcgt---------c--gagg----
                     Bushbaby  -------ggggcggc----------aacg------g-c-----gcggcgt---------c--gagg----
                     Squirrel  agcgctgggggctgc----------gaaa------t-c-----gcggtgt---------c--cagg----
       Lesser Egyptian jerboa  tttacttagggctgt----------gtgg------t-c-----ctgccat---------c--gagg----
                 Prairie vole  --------------------------------------------------------------gagg----
              Chinese hamster  -------------------------------------------------g---------c--gaggcgca
               Golden hamster  -------------------------------------------------t---------c--gaggcgca
                        Mouse  -------------------------------------------------t---------c--gagg----
                          Rat  -------------------------------------------------t---------c--gagg----
               Naked mole-rat  -------ggggctgc----------gagg------t-c-----gcgacga---------c--gggg----
                   Guinea pig  -------actgctgc----------gagg------t-c-----gcgacgt---------c--gggg----
                   Chinchilla  -------ggagctgc----------tagg------t-c-----gcgacgt---------c--tggg----
             Brush-tailed rat  -------agagctgc----------gggg------t-c-----gcggcat---------c--gctg----
                       Rabbit  --------gggcgac----------gagg------t-c-----gcggtgt---------c--gaga----
                         Pika  --------cctcgcc----------ccgg--------------acggcgt---------c--gagg----
                          Pig  -------gggacga-----------aagg------t-c-----gcagcgt---------c--caga----
                       Alpaca  -------agggcag-----------gagg------t-c-----gtagcat---------c--cagg----
                      Dolphin  -------ggggcgg-----------aagg------t-c-----gcagcgt---------c--cagg----
                 Killer whale  -------ggggcgg-----------aagg------t-c-----gcagcgt---------c--cagg----
                          Cow  ------------------------------------------------at---------c--cagt----
                        Horse  --------gagcgg-----------cagg------t-c-----gcagcgt---------c--gagg----
             White rhinoceros  -------ggagcgg-----------gagg------t-c-----gtagcgt---------c--cagg----
                          Dog  -------gcggccg-----------gagg------t-g-----gcggcgt---------c--cggg----
                        Panda  -------gaggcgg-----------gagg------t-c-----gcagcgt---------c--cagg----
               Pacific walrus  -------gaggcgg-----------gagg------t-c-----gcagcgt---------c--cagg----
                 Weddell seal  -------gaggcgg-----------gagg------t-c-----gcagcgt---------c--cagg----
             Black flying-fox  -------ggggtgg-----------gagg------t-c-----gcagcgt---------g--cagg----
                      Megabat  -------ggggcgg-----------gagg------t-c-----gcagcgt---------g--cagg----
                Big brown bat  ----------------------------g------t-c-----cc-------------------------
                     Microbat  ----------------------------g------t-c-----tcc-------------------g----
                     Hedgehog  -------cgagcgg-----------gcag--------c-----tcggagt---------c--gggg----
                     Elephant  ---------tctggc----------------------c-----gcgggtg------------gcgc----
          Cape elephant shrew  ---------aatagctctcc---------------a-c-----gcggaac------------ggga----
             Cape golden mole  ---------aatagcgctccg-ctgtaaa------g-c-----gaggcgg------------gggc----
                    Armadillo  ----------------------------g------c-c-----gagggtc---------c-tgcgg----
                      Opossum  ----------------------gcgcggg------g-caggaggtggggg---------tgggggg----
              Tasmanian devil  ----------------------gcccagg------c-c---aggtggggc---------t---ggg----
                     Platypus  ---cgccgacgcgatctcacgtacccccg------c-c-----gccacgc---------t--acgg----
                  Rock pigeon  ----------------------------ctggggct-g-----ctgcccg---------t--catc----
                 Saker falcon  -----------------------------------c-c-----cgagctg---gatggcc--ctgc----
             Peregrine falcon  -----------------------------------c-c-----cgagctg---gatggcc--ctgc----
          Collared flycatcher  ----------------------------cccctt-g-g-----caggcag-ggcaagggc--ctcg----
                  Zebra finch  -----------------------------------a-g-----ccggcggtgggaagggc--ctga----
                   Budgerigar  ----------------------------cttcatgc-t-----ccaactg---------c--atcc----
                       Parrot  -----------------------------------c-c-----ccgcctg---------c--ctcc----
                Scarlet macaw  -----------------------------------c-a-----tcacctg---------c--ctcc----
                 Mallard duck  -----------------------------------tgc-----ccgccag-ggtggaggc--aggg----
                       Turkey  -----------------------------------t-c-----tcgtccg-agcagaacc----tg----
           American alligator  -----------------------------------g-c-----gcagcag--------------------
               Painted turtle  ----------------------------t------t-a-----ggggcca--------------------
       Spiny softshell turtle  ----------------------------cattca-t-a-----tggac----------------------
                    Tetraodon  -----------------------------------t-c-----ccgacac---------c--ggaa----
                         Fugu  -----------------------------------t-c-----ccgccac---------c--ggaa----
                       Tenrec  ======================================================================
             Tibetan antelope  ======================================================================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Manatee  ======================================================================
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  ======================================================================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ======================================================================
                     Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Medaka  ======================================================================
                   Coelacanth  ======================================================================
                      Wallaby  ======================================================================
                       Lizard  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Atlantic cod  ======================================================================
     Chinese softshell turtle  ======================================================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  ======================================================================
              Green seaturtle  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
           Tibetan ground jay  ======================================================================
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  t--gaaacc----------------------------------------------------a-aggg---
                        Chimp  t--gaaacc----------------------------------------------------a-aggg---
                      Gorilla  t--gaaacc----------------------------------------------------a-aggg---
                       Gibbon  t--gaaacc----------------------------------------------------a-aggg---
          Crab-eating macaque  t--gaagcc----------------------------------------------------a-aggg---
                       Baboon  t--gaagcc----------------------------------------------------a-aggg---
                 Green monkey  t--gaagcc----------------------------------------------------a-aggg---
                     Marmoset  t--gaaccc----------------------------------------------------a-agga---
              Squirrel monkey  t--gaagcc----------------------------------------------------a-aggg---
                     Bushbaby  tgagagggc----------------------------------------------------a-agag---
                     Squirrel  c--gcagtc----------------------------------------------------t-aggg---
       Lesser Egyptian jerboa  g--gcagct----------------------------------------------------tgggga---
                 Prairie vole  t--acagcc----------------------------------------------------c-aggg---
              Chinese hamster  c--gcagcc----------------------------------------------------c-ggga---
               Golden hamster  c--gcagcc----------------------------------------------------c-agca---
                        Mouse  ----------------------------------------------------------------------
                          Rat  ------------------------------------------------------------------g---
               Naked mole-rat  t--gcagct----------------------------------------------------c-tgga---
                   Guinea pig  t--gcagct----------------------------------------------------c-taga---
                   Chinchilla  t--gcagtt----------------------------------------------------c-tgga---
             Brush-tailed rat  t--gcagtt----------------------------------------------------c-tgga---
                       Rabbit  t--gctgcg----------------------------------------------------g-gggg---
                         Pika  t--g------------------------------------------------------------------
                          Pig  g--gcagcc----------------------------------------------------g-aggg---
                       Alpaca  g--gcaggc----------------------------------------------------g-aggg---
                      Dolphin  g--acagcc----------------------------------------------------g-aggg---
                 Killer whale  g--acagcc----------------------------------------------------g-aggg---
                          Cow  g--acaggc----------------------------------------------------a-aggg---
                        Horse  g--gcagcc----------------------------------------------------g-aggg---
             White rhinoceros  g--gcagcc----------------------------------------------------g-aagg---
                          Dog  g--acagcc----------------------------------------------------g-aggg---
                        Panda  g--gcagca----------------------------------------------------g-aggg---
               Pacific walrus  g--gcagcc----------------------------------------------------t-aggg---
                 Weddell seal  g--gcagcc----------------------------------------------------t-aggg---
             Black flying-fox  g--gcagcg----------------------------------------------------g-agaa---
                      Megabat  g--gcagcg----------------------------------------------------g-agaa---
                Big brown bat  g--gccgct----------------------------------------------------a-cgac---
                     Microbat  g--cccgcc----------------------------------------------------a-cgac---
                     Hedgehog  c--gcc----------------------------------------------------------------
                     Elephant  g--gtcgcg----------------------------------------------------g-aggc---
          Cape elephant shrew  a--gcagga----------------------------------------------------g-aagg---
             Cape golden mole  g--ggcgcg----------------------------------------------------g-aggg---
                    Armadillo  g--gccgcc----------------------------------------------------g-aggg---
                      Opossum  t--ggggta----------------------------------------------------g-gggt---
              Tasmanian devil  t--ggggcc----------------------------------------------------a-tggc---
                     Platypus  a--gacgtg----------------------------------------------------c-gggg---
                  Rock pigeon  c--ctgacc----------------------------------------------------a-aagc---
                 Saker falcon  c--caggtt----------------------------------------------------a-gagg---
             Peregrine falcon  c--caggtt----------------------------------------------------a-gagg---
          Collared flycatcher  c--tcggct----------------------------------------------------g-gggg---
                  Zebra finch  -------------------------------------------------------------g-ggaa---
                   Budgerigar  t--ccagggctggcgggggagaaagagggaggaaatcccccatcacctgcctccatcagctg-gggc---
                       Parrot  a--tcagcc----------------------------------------------------g-gagc---
                Scarlet macaw  a--tcagcc----------------------------------------------------g-gggc---
                 Mallard duck  a--gaggag----------------------------------------------------a-ggaa---
                       Turkey  c--gcggcc----------------------------------------------------c-gggc---
           American alligator  ----cggac----------------------------------------------------g-gggg---
               Painted turtle  t--ggagac----------------------------------------------------a-gggt---
       Spiny softshell turtle  -----aacc----------------------------------------------------a-ggaa---
                    Tetraodon  c--ggcccg----------------------------------------------------g-tgggcgt
                         Fugu  c--gggccg----------------------------------------------------g-tgggcgt
                       Tenrec  ======================================================================
             Tibetan antelope  ======================================================================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Manatee  ======================================================================
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  ======================================================================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ======================================================================
                     Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Medaka  ======================================================================
                   Coelacanth  ======================================================================
                      Wallaby  ======================================================================
                       Lizard  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Atlantic cod  ======================================================================
     Chinese softshell turtle  ======================================================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  ======================================================================
              Green seaturtle  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
           Tibetan ground jay  ======================================================================
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -------------
                        Chimp  -------------
                      Gorilla  -------------
                       Gibbon  -------------
          Crab-eating macaque  -------------
                       Baboon  -------------
                 Green monkey  -------------
                     Marmoset  -------------
              Squirrel monkey  -------------
                     Bushbaby  -------------
                     Squirrel  -------------
       Lesser Egyptian jerboa  -------------
                 Prairie vole  -------------
              Chinese hamster  -------------
               Golden hamster  -------------
                        Mouse  -------------
                          Rat  -------------
               Naked mole-rat  -------------
                   Guinea pig  -------------
                   Chinchilla  -------------
             Brush-tailed rat  -------------
                       Rabbit  -------------
                         Pika  -------------
                          Pig  -------------
                       Alpaca  -------------
                      Dolphin  -------------
                 Killer whale  -------------
                          Cow  -------------
                        Horse  -------------
             White rhinoceros  -------------
                          Dog  -------------
                        Panda  -------------
               Pacific walrus  -------------
                 Weddell seal  -------------
             Black flying-fox  -------------
                      Megabat  -------------
                Big brown bat  -------------
                     Microbat  -------------
                     Hedgehog  -------------
                     Elephant  -------------
          Cape elephant shrew  -------------
             Cape golden mole  -------------
                    Armadillo  -------------
                      Opossum  -------------
              Tasmanian devil  -------------
                     Platypus  -------------
                  Rock pigeon  -------------
                 Saker falcon  -------------
             Peregrine falcon  -------------
          Collared flycatcher  -------------
                  Zebra finch  -------------
                   Budgerigar  -------------
                       Parrot  -------------
                Scarlet macaw  -------------
                 Mallard duck  -------------
                       Turkey  -------------
           American alligator  -------------
               Painted turtle  -------------
       Spiny softshell turtle  -------------
                    Tetraodon  gttgtacggggag
                         Fugu  gttgtacggggag
                       Tenrec  =============
             Tibetan antelope  =============
                        Shrew  NNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNN
                Domestic goat  =============
                        Sheep  =============
              Star-nosed mole  NNNNNNNNNNNNN
                      Manatee  =============
           Chinese tree shrew  NNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNN
               Bactrian camel  =============
                      Ferret   NNNNNNNNNNNNN
       Yellowbelly pufferfish  =============
                     Aardvark  NNNNNNNNNNNNN
                       Medaka  =============
                   Coelacanth  =============
                      Wallaby  =============
                       Lizard  =============
           Southern platyfish  =============
                      Chicken  =============
                 Atlantic cod  =============
     Chinese softshell turtle  =============
                       Rhesus  NNNNNNNNNNNNN
                X. tropicalis  =============
              Green seaturtle  =============
          Medium ground finch  =============
       White-throated sparrow  =============
           Tibetan ground jay  =============
                    Orangutan  NNNNNNNNNNNNN

Inserts between block 3 and 4 in window
B D                    Panda 38bp
              Pacific walrus 3bp
                Weddell seal 3bp
B D                 Elephant 4bp
         Cape elephant shrew 14bp
            Cape golden mole 3bp
B D                Armadillo 20bp
B D                  Opossum 20bp
B D          Tasmanian devil 14bp
B D                 Platypus 5bp
  D              Rock pigeon 11bp
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
  D      Collared flycatcher 15bp
B D              Zebra finch 22bp
B D               Budgerigar 11bp
  D                   Parrot 11bp
  D            Scarlet macaw 11bp
  D             Mallard duck 17bp
B D                   Turkey 29bp
B D       American alligator 15bp
  D           Painted turtle 11bp
  D   Spiny softshell turtle 11bp

Alignment block 4 of 135 in window, 76384215 - 76384227, 13 bps 
B D                     Human  t---cc-------cc-----cgg--g---ag----ag-
B D                     Chimp  ----cc-------cc-----cgg--g---ag----ag-
B D                   Gorilla  t---cc-------cc-----cgg--g---ag----ag-
B D                    Gibbon  t---cc-------cc-----tgg--g---ag----ag-
B D       Crab-eating macaque  t---ct-------cc-----tgg--g---ag----ag-
B D                    Baboon  t---ct-------cc-----tgg--g---ag----ag-
B D              Green monkey  t---ct-------cc-----tgg--g---ag----ag-
B D                  Marmoset  t----t-------cc-----agg--g---ag----ag-
B D           Squirrel monkey  t---cc-------cc-----aag--g---ag----ag-
B D                  Bushbaby  t---cg-------ag-----atg--a---agccgagg-
B D                  Squirrel  t---ct-------tc-----cca--g---ag----ct-
       Lesser Egyptian jerboa  t---ct-------tc-----cgc--g---gg----tg-
                 Prairie vole  t---cc-------tc-----agagag---ag----cg-
B D           Chinese hamster  c---cc-------tc-----ggcgag---ag----cg-
               Golden hamster  t---cc-------tc-----agcgag---ag----cg-
B D                     Mouse  -----t-------tc-----agt--a---ag----cg-
B D                       Rat  t---cc-------tc-----agc--c---ag----cg-
B D            Naked mole-rat  t---cg-------tg-----agc--g---ag----cg-
B D                Guinea pig  t---cc-------tg-----cgc--g---ag----ca-
                   Chinchilla  t---ct-------tg-----ccc--g---ag----ca-
             Brush-tailed rat  t---cg-------tg-----cgc--g---ct----ca-
B D                    Rabbit  ca--tc-------tc-----cga--g---ag----cg-
B D                      Pika  ----tg-------tc-----ccg--g---gg----cg-
B D                       Pig  t---ct-------gc-----ccg--g---ag----cc-
B D                    Alpaca  t---ct-------gc-----ccg--g---ag----cc-
B D                   Dolphin  t---ct-------gc-----ccg--g---ag----cc-
                 Killer whale  t---ct-------gc-----ccg--g---ag----cc-
B D                       Cow  t---ct-------aa-----cca--g---ag----cc-
B D                     Horse  g---ca-------gc-----ccg--g---ag----cg-
B D          White rhinoceros  t---ct-------gc-----ccg--g---ag----cg-
B D                       Dog  -------------gc-----c-----------------
               Pacific walrus  -------------gc-----ccc--c---ag----ct-
                 Weddell seal  -------------gc-----ccc--c---ag----ct-
             Black flying-fox  t---ct-------gc-----ccc--c---ag----cg-
B D                   Megabat  t---ct-------gc-----gcc--c---ag----cg-
                Big brown bat  t---tg-------ag-----------------------
B D                  Microbat  t---tc-------gg-----------------------
B D                  Elephant  t---gc-------aa-----ccg--a---gg----gg-
          Cape elephant shrew  c---cc-------ag-----tgg--g---ag----cc-
             Cape golden mole  ----cc-------gg-----tgg--t---tg----ac-
B D                 Armadillo  t---cc-------tg-----cgg-------g----gc-
B D                   Opossum  -----g-------ac-----acc--g---ag----gg-
B D           Tasmanian devil  -----t-------gc-----atg--g---gg----ag-
B D                  Platypus  -ctccc-------cg-----gcc--g---ag-------
  D               Rock pigeon  ---cgc-------tgctgtcccc--a---ag----gg-
  D              Saker falcon  ---ccc-------tg-----gcc--t---gg----gg-
  D          Peregrine falcon  ---tcc-------tg-----gcc--t---gg----gg-
  D       Collared flycatcher  ---ccc-------tg-----ggc--g---ag----tg-
B D               Zebra finch  ---tcc-------c------gcc--g---gg----cg-
B D                Budgerigar  ---ccc-------tg-----cct------gg----gg-
  D                    Parrot  ---tcc-------tg-----cct--g---gg----gg-
  D             Scarlet macaw  ---cac-------tg-----cct--g---gg----gg-
  D              Mallard duck  ---tcc-------tc-----acg--gcctgg----ct-
B D                    Turkey  ---tcc-------cc-----cag--g---gg----ag-
B D        American alligator  ---cag-------ca-----gac--a---ga----ca-
  D            Painted turtle  ---tcc-------ct-----ggc--t---aa----ga-
  D    Spiny softshell turtle  ---gtcacgtcatcc-----agg--t---ga----cg-
B D                 Tetraodon  ----tt-------ta-----ccg--a---ca----tgc
B D                      Fugu  ----tt-------ca-----ccg--a---ca----tgc
B D                    Tenrec  ======================================
B D                  Hedgehog  --------------------------------------
            Tibetan antelope  ======================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================
B D                     Sheep  ======================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ======================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ======================================
B D                     Panda  ======================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================================
B D                Coelacanth  ======================================
B D                   Wallaby  ======================================
B D                    Lizard  ======================================
          Southern platyfish  ======================================
B D                   Chicken  ======================================
B D              Atlantic cod  ======================================
  D  Chinese softshell turtle  ======================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================
  D           Green seaturtle  ======================================
B D       Medium ground finch  ======================================
  D    White-throated sparrow  ======================================
          Tibetan ground jay  ======================================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 4 and 5 in window
B D                      Dog 3bp
B D                  Opossum 2bp

Alignment block 5 of 135 in window, 76384228 - 76384242, 15 bps 
B D                     Human  -------cggagccgcg-cg-cgc
B D                     Chimp  -------cggaaccgcg-cg-cgc
B D                   Gorilla  -------cggaaccgcg-cg-cgc
B D                    Gibbon  -------cggaaccgcg-cg-cgc
B D       Crab-eating macaque  -------cggaaccgcg-cg-cgc
B D                    Baboon  -------cggaaccgcg-cg-cgc
B D              Green monkey  -------cggaaccgcg-cg-cgc
B D                  Marmoset  -------cggaaccgcg-cg-cgt
B D           Squirrel monkey  -------cggaaccgcg-cg-cgc
B D                  Bushbaby  -------tgaagccgca-cg-ttc
B D                  Squirrel  -------caagatcaca-cg-cgc
       Lesser Egyptian jerboa  -------caga-----------ac
                 Prairie vole  -------cggaaccacg-cg-cac
B D           Chinese hamster  -------cggaagcgcg-cg-gac
               Golden hamster  -------cagaaccacg-cg-cac
B D                     Mouse  -------cagacccacg-cg-tac
B D                       Rat  -------cagaaccacg-cg-tgc
B D            Naked mole-rat  -------cagagccacg-cg-cgg
B D                Guinea pig  -------cagagccgcg-ct-cgg
                   Chinchilla  -------caaagccacg-ca-cgg
             Brush-tailed rat  -------cagagccacg-cg-cgg
B D                    Rabbit  -------tggaagggcg-cg-cgc
B D                      Pika  -------tgaaagggcg-cg-cgc
B D                       Pig  -------ctgagccaca-ag-cgc
B D                    Alpaca  -------ctgaaccaca-tg-cgc
B D                   Dolphin  -------ctgagccacg-tg-tgc
                 Killer whale  -------ctgagccacg-tg-tgc
B D                       Cow  -------ctgagccacg-cg-cgc
B D                     Horse  -------ctgagccacc-cg-caa
B D          White rhinoceros  -------ctgagccgcc-cg-cgc
B D                       Dog  -------ccgacccggg-------
               Pacific walrus  -------tcgagccgcg-cg-cgc
                 Weddell seal  -------ccgagccgcg-cg-cgc
             Black flying-fox  -------ccgagcagcg-cg-cgc
B D                   Megabat  -------gcgagcagcg-cg-cgc
B D                  Hedgehog  -------cggggctgcggcg-cgc
B D                  Elephant  ------------cgtcg-gg-agc
          Cape elephant shrew  ------------cggtg-gg-agc
             Cape golden mole  ------------cggta-tgcagc
B D                 Armadillo  ------------cgccg-ag-ggt
B D                   Opossum  -----------ggcatc-c-----
B D           Tasmanian devil  ------------------t-----
B D                  Platypus  ---------ggatcccc-tg-cac
  D               Rock pigeon  -----------------------c
  D              Saker falcon  -----------------------c
  D          Peregrine falcon  -----------------------c
  D       Collared flycatcher  -----------------------c
B D               Zebra finch  -----------------------c
B D                Budgerigar  -----------------------c
  D                    Parrot  -----------------------c
  D             Scarlet macaw  -----------------------c
  D              Mallard duck  -----------------------c
B D                    Turkey  -----------------------c
B D        American alligator  -----------------------c
  D            Painted turtle  -----------------------a
  D    Spiny softshell turtle  -----------------------c
B D                 Tetraodon  tgaacgaccgggt-----------
B D                      Fugu  tgaacgacagggt-----------
B D                    Tenrec  ========================
            Tibetan antelope  ========================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ========================
B D                     Sheep  ========================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ========================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNN
B D                  Microbat  ------------------------
               Big brown bat  ------------------------
              Bactrian camel  ========================
B D                     Panda  ========================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ========================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ========================
B D                Coelacanth  ========================
B D                   Wallaby  ========================
B D                    Lizard  ========================
          Southern platyfish  ========================
B D                   Chicken  ========================
B D              Atlantic cod  ========================
  D  Chinese softshell turtle  ========================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ========================
  D           Green seaturtle  ========================
B D       Medium ground finch  ========================
  D    White-throated sparrow  ========================
          Tibetan ground jay  ========================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 5 and 6 in window
B D                      Pig 14bp
B D                   Alpaca 383bp
B D                  Dolphin 13bp
                Killer whale 13bp
B D                      Cow 13bp
B D                 Elephant 3bp
         Cape elephant shrew 12bp
            Cape golden mole 7bp
B D                Armadillo 20bp
B D                 Platypus 2bp
  D              Rock pigeon 12bp
  D             Saker falcon 13bp
  D         Peregrine falcon 13bp
  D      Collared flycatcher 12bp
B D              Zebra finch 15bp
B D               Budgerigar 13bp
  D                   Parrot 13bp
  D            Scarlet macaw 13bp
  D             Mallard duck 13bp
B D                   Turkey 21bp
B D       American alligator 16bp
  D           Painted turtle 15bp
  D   Spiny softshell turtle 13bp

Alignment block 6 of 135 in window, 76384243 - 76384249, 7 bps 
B D                     Human  cc-ggcgc
B D                     Chimp  cc-ggcgc
B D                   Gorilla  cc-ggcgc
B D                    Gibbon  cc-ggcgc
B D       Crab-eating macaque  cc-ggcgc
B D                    Baboon  cc-ggcgc
B D              Green monkey  cc-ggcgc
B D                  Marmoset  cc-ggcgc
B D           Squirrel monkey  cc-ggcgt
B D                  Bushbaby  tt-ggcgc
B D                  Squirrel  cc-ggtgc
       Lesser Egyptian jerboa  cc-gaggc
                 Prairie vole  cc-gaggc
B D           Chinese hamster  gg-acgct
               Golden hamster  cc-ggacc
B D                     Mouse  cc-gaagc
B D                       Rat  cc-gaagc
B D            Naked mole-rat  cc-agtgt
B D                Guinea pig  ccgggcgt
                   Chinchilla  cc-agtgt
             Brush-tailed rat  tc-agcgt
B D                    Rabbit  ct-gaagc
B D                      Pika  cc-gaagc
B D                       Pig  cg-ggag-
B D                   Dolphin  cg-gggg-
                 Killer whale  cg-gggg-
B D                       Cow  cg-gggg-
B D                     Horse  cc-ggcgc
B D          White rhinoceros  cc-ggcgc
B D                     Panda  -g-ggcgc
               Pacific walrus  ca-cgcgc
                 Weddell seal  ca-ggcgc
             Black flying-fox  cc-ggcgc
B D                   Megabat  cc-ggcgc
B D                  Hedgehog  ct-ggc--
B D                  Elephant  ag-gccgc
          Cape elephant shrew  gg-gtggg
             Cape golden mole  cg-gggag
B D                 Armadillo  cc-tgcgg
B D                   Opossum  ct-ggctc
B D           Tasmanian devil  tt-ggctc
B D                  Platypus  cc-tcctc
  D               Rock pigeon  -----cgc
  D              Saker falcon  ------gc
  D          Peregrine falcon  ------gc
B D                 Tetraodon  cc-ggtac
B D                      Fugu  cc-ggtac
B D                    Tenrec  ========
            Tibetan antelope  ========
B D                     Shrew  NNNNNNNN
        David's myotis (bat)  NNNNNNNN
               Domestic goat  ========
B D                     Sheep  ========
B D                    Alpaca  ========
             Star-nosed mole  NNNNNNNN
B D                   Manatee  ========
          Chinese tree shrew  NNNNNNNN
B D                       Dog  --------
B D                       Cat  NNNNNNNN
B D                  Microbat  --------
               Big brown bat  --------
              Bactrian camel  ========
B D                   Ferret   NNNNNNNN
      Yellowbelly pufferfish  ========
                    Aardvark  NNNNNNNN
B D                    Medaka  ========
B D                Coelacanth  ========
B D                    Turkey  ========
  D              Mallard duck  ========
  D             Scarlet macaw  ========
  D                    Parrot  ========
B D                Budgerigar  ========
B D                   Wallaby  ========
  D    Spiny softshell turtle  ========
B D                    Lizard  ========
          Southern platyfish  ========
  D            Painted turtle  ========
B D                   Chicken  ========
B D              Atlantic cod  ========
  D       Collared flycatcher  ========
  D  Chinese softshell turtle  ========
B D               Zebra finch  ========
B D                    Rhesus  NNNNNNNN
B D             X. tropicalis  ========
  D           Green seaturtle  ========
B D       Medium ground finch  ========
B D        American alligator  ========
  D    White-throated sparrow  ========
          Tibetan ground jay  ========
B D                 Orangutan  NNNNNNNN

Inserts between block 6 and 7 in window
B D                      Pig 13bp
B D                  Dolphin 13bp
                Killer whale 13bp
B D                      Cow 13bp
B D                    Horse 24bp
B D         White rhinoceros 24bp
B D                    Panda 4bp
              Pacific walrus 5bp
                Weddell seal 23bp
            Black flying-fox 334bp
B D                  Megabat 24bp
B D                  Opossum 4bp
B D          Tasmanian devil 4bp
  D              Rock pigeon 2bp
  D             Saker falcon 2bp
  D         Peregrine falcon 2bp

Alignment block 7 of 135 in window, 76384250 - 76384257, 8 bps 
B D                     Human  tcgct----------------ccg----
B D                     Chimp  tcgct----------------ccg----
B D                   Gorilla  tcgct----------------ccg----
B D                    Gibbon  tcgct----------------ccg----
B D       Crab-eating macaque  tcgct----------------ccg----
B D                    Baboon  tcgct----------------ccg----
B D              Green monkey  tcgct----------------ccg----
B D                  Marmoset  tcgct----------------ccc----
B D           Squirrel monkey  tcgct----------------ccc----
B D                  Bushbaby  ccgcccatccgacatcgggcaccg----
B D                  Squirrel  ctact----------------caa----
       Lesser Egyptian jerboa  ccgcg----------------cgg----
                 Prairie vole  ccact----------------cgg----
B D           Chinese hamster  gggcg----------------cgg----
               Golden hamster  ggatg----------------ccg----
B D                     Mouse  ccgct----------------cgg----
B D                       Rat  ccact----------------cgg----
B D            Naked mole-rat  cggcg----------------cgg----
B D                Guinea pig  cggcg----------------cga----
                   Chinchilla  ccgcg----------------cgg----
             Brush-tailed rat  cagcg----------------cgg----
B D                    Rabbit  ccgct----------------cag----
B D                      Pika  ccgtt----------------cag----
B D                       Pig  gggag----------------ccg----
B D                   Dolphin  gggcg----------------ccg----
                 Killer whale  gggcg----------------ccg----
B D                       Cow  gtgcg----------------cgg----
B D                     Horse  gcgcg----------------ccg----
B D          White rhinoceros  gagcg----------------ccg----
                 Weddell seal  gggcg----------------ccg----
B D                   Megabat  gggcg----------------ccg----
                Big brown bat  --gcg----------------ccg----
B D                  Microbat  --gcg----------------acg----
B D                  Elephant  tcgcg----------------cca----
          Cape elephant shrew  agacg----------------gtg----
             Cape golden mole  gggcg----------------cc-----
B D                 Armadillo  gggcg----------------ccg----
B D                   Opossum  ttgcg----------------ggg----
B D           Tasmanian devil  ccggc----------------ccg----
B D                  Platypus  ccgga----------------cgg----
  D               Rock pigeon  ---------------------ctg----
  D              Saker falcon  ---------------------tct----
  D          Peregrine falcon  ---------------------tct----
  D              Mallard duck  ---------------------tcg----
B D                    Turkey  ---------------------tcg----
B D        American alligator  ---------------------tgg----
  D            Painted turtle  ----------------------gg----
  D    Spiny softshell turtle  ----------------------ca----
B D                 Tetraodon  tcggt----------------cagcctg
B D                      Fugu  tcggt----------------cagcttg
B D                    Tenrec  ============================
B D                  Hedgehog  ----------------------------
            Tibetan antelope  ============================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ============================
B D                     Sheep  ============================
B D                    Alpaca  ============================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ============================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ============================
B D                       Dog  ----------------------------
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ============================
B D                     Panda  ============================
            Black flying-fox  ============================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ============================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ============================
B D                Coelacanth  ============================
  D             Scarlet macaw  ============================
  D                    Parrot  ============================
B D                Budgerigar  ============================
B D                   Wallaby  ============================
B D                    Lizard  ============================
          Southern platyfish  ============================
B D                   Chicken  ============================
B D              Atlantic cod  ============================
  D       Collared flycatcher  ============================
  D  Chinese softshell turtle  ============================
B D               Zebra finch  ============================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ============================
  D           Green seaturtle  ============================
B D       Medium ground finch  ============================
  D    White-throated sparrow  ============================
          Tibetan ground jay  ============================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 7 and 8 in window
B D                 Squirrel 3bp
      Lesser Egyptian jerboa 7bp
                Prairie vole 3bp
B D          Chinese hamster 110bp
B D                    Mouse 3bp
B D                      Rat 3bp
B D           Naked mole-rat 12bp
B D               Guinea pig 12bp
                  Chinchilla 12bp
            Brush-tailed rat 12bp
B D                   Rabbit 1bp
B D                     Pika 1bp
B D                  Opossum 3bp
B D          Tasmanian devil 3bp
  D              Rock pigeon 5bp
  D             Saker falcon 5bp
  D         Peregrine falcon 5bp
  D             Mallard duck 5bp
B D                   Turkey 5bp
B D       American alligator 5bp
  D           Painted turtle 5bp
  D   Spiny softshell turtle 5bp

Alignment block 8 of 135 in window, 76384258 - 76384270, 13 bps 
B D                     Human  -acacgagtt----------cgcg
B D                     Chimp  -acacgagtt----------cgcg
B D                   Gorilla  -acacgagtt----------cgcg
B D                    Gibbon  -acacgagtt----------cgcg
B D       Crab-eating macaque  -acacgagtt----------cgcg
B D                    Baboon  -acacgagtt----------cgcg
B D              Green monkey  -acacgagtt----------cgcg
B D                  Marmoset  -acacgagtt----------cgcg
B D           Squirrel monkey  -acacgagtt----------cgcg
B D                  Bushbaby  -agacgagtt----------cgct
B D                  Squirrel  -ctgggcacccaggcgtattcgcg
       Lesser Egyptian jerboa  -cgaggagtt----------ggca
                 Prairie vole  -ctgggcgcg----------ggga
               Golden hamster  ----ggcgcg----------ggga
B D                     Mouse  -ctgggcgcc----------ggca
B D                       Rat  -ctgggcgcc----------ggta
B D            Naked mole-rat  -aggcgagct----------c---
B D                Guinea pig  -aggggagct----------cgcg
                   Chinchilla  -agggaagct----------tgca
             Brush-tailed rat  -agggaagcc----------cgtg
B D                    Rabbit  -ctttgggca----------ggga
B D                      Pika  -tgttgggca----------tccg
B D                       Pig  ----------------------cg
B D                   Dolphin  -aggcgagat----------cgcg
                 Killer whale  -aggcgagat----------cgcg
B D                     Horse  -cggcgagtt----------cgcg
B D          White rhinoceros  -cggcgagtt----------cgcg
B D                     Panda  ---gcgagtt----------cgcg
                 Weddell seal  -cggcgagtt----------cgcg
B D                   Megabat  -cgtcgagac----------cgcg
                Big brown bat  -cggcgagtt----------cccg
B D                  Microbat  -cgacgagtt----------cgcg
B D                  Elephant  -------g----------------
          Cape elephant shrew  -------g----------------
B D                 Armadillo  -------a----------------
B D                   Opossum  -tcccaagct----------cgga
B D           Tasmanian devil  -cccccgctt----------tgca
B D                  Platypus  -atacgtgtc----------cgcg
  D               Rock pigeon  --------------------cact
  D              Saker falcon  --------------------cctg
  D          Peregrine falcon  --------------------cctg
  D              Mallard duck  --------------------t---
B D                    Turkey  --------------------cccg
B D        American alligator  --------------------tcag
  D            Painted turtle  --------------------cgtg
  D    Spiny softshell turtle  --------------------cgtg
B D                 Tetraodon  acggagagcg----------cc--
B D                      Fugu  acggagagcg----------cc--
B D                    Tenrec  ========================
B D                  Hedgehog  ------------------------
B D           Chinese hamster  ========================
            Tibetan antelope  ========================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ========================
B D                     Sheep  ========================
B D                       Cow  ------------------------
B D                    Alpaca  ========================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ========================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ========================
B D                       Dog  ------------------------
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ========================
            Black flying-fox  ========================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNN
            Cape golden mole  ------------------------
      Yellowbelly pufferfish  ========================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ========================
B D                Coelacanth  ========================
  D             Scarlet macaw  ========================
  D                    Parrot  ========================
B D                Budgerigar  ========================
B D                   Wallaby  ========================
B D                    Lizard  ========================
          Southern platyfish  ========================
B D                   Chicken  ========================
B D              Atlantic cod  ========================
  D       Collared flycatcher  ========================
  D  Chinese softshell turtle  ========================
B D               Zebra finch  ========================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ========================
  D           Green seaturtle  ========================
B D       Medium ground finch  ========================
  D    White-throated sparrow  ========================
          Tibetan ground jay  ========================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 8 and 9 in window
  D              Rock pigeon 9bp
  D             Saker falcon 9bp
  D         Peregrine falcon 9bp
  D             Mallard duck 9bp
B D                   Turkey 9bp
B D       American alligator 9bp
  D           Painted turtle 9bp
  D   Spiny softshell turtle 9bp

Alignment block 9 of 135 in window, 76384271 - 76384274, 4 bps 
B D                     Human  c-----------gga
B D                     Chimp  c-----------gga
B D                   Gorilla  c-----------gga
B D                    Gibbon  c-----------gga
B D       Crab-eating macaque  c-----------gca
B D                    Baboon  c-----------gca
B D              Green monkey  c-----------gca
B D                  Marmoset  c-----------gga
B D           Squirrel monkey  t-----------gga
B D                  Bushbaby  c-----------cga
B D                  Squirrel  c-----------ggg
       Lesser Egyptian jerboa  c-----------ggg
                 Prairie vole  t-----------ctg
               Golden hamster  t-----------ctg
B D                     Mouse  t-----------gtg
B D                       Rat  t-----------ctg
B D                Guinea pig  c-----------aag
                   Chinchilla  c-----------aag
             Brush-tailed rat  c-----------aag
B D                    Rabbit  g-----------ccg
B D                      Pika  g-----------gca
B D                       Pig  t-----------tga
B D                   Dolphin  t-----------gag
                 Killer whale  t-----------gag
B D                  Elephant  ------------gaa
          Cape elephant shrew  ------------gac
             Cape golden mole  ------------gca
B D                 Armadillo  ------------ggg
B D                   Opossum  c-----------gag
B D           Tasmanian devil  ct----------gac
B D                  Platypus  -c----------aga
  D               Rock pigeon  ------------ctg
  D              Saker falcon  ------------ctg
  D          Peregrine falcon  ------------ctg
B D                Budgerigar  ------------ccg
  D                    Parrot  ------------ccg
  D             Scarlet macaw  ------------ccg
  D              Mallard duck  ------------gag
B D                    Turkey  ------------atg
B D        American alligator  ------------aag
  D            Painted turtle  ------------agg
  D    Spiny softshell turtle  ------------acg
B D                 Tetraodon  -ct---------ga-
B D                      Fugu  -ctgtccatccaga-
B D                    Tenrec  ===============
B D                  Hedgehog  ---------------
B D           Chinese hamster  ===============
            Tibetan antelope  ===============
B D                     Shrew  NNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNN
B D                     Horse  ---------------
               Domestic goat  ===============
B D                     Sheep  ===============
B D                       Cow  ---------------
B D                    Alpaca  ===============
             Star-nosed mole  NNNNNNNNNNNNNNN
B D                   Manatee  ===============
B D          White rhinoceros  ---------------
          Chinese tree shrew  NNNNNNNNNNNNNNN
              Pacific walrus  ===============
B D                       Dog  ---------------
B D                       Cat  NNNNNNNNNNNNNNN
B D                  Microbat  ---------------
               Big brown bat  ---------------
B D            Naked mole-rat  ---------------
              Bactrian camel  ===============
B D                     Panda  ---------------
            Black flying-fox  ===============
B D                   Ferret   NNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ===============
                    Aardvark  NNNNNNNNNNNNNNN
B D                    Medaka  ===============
B D                Coelacanth  ===============
B D                   Wallaby  ===============
B D                    Lizard  ===============
          Southern platyfish  ===============
B D                   Chicken  ===============
B D              Atlantic cod  ===============
  D       Collared flycatcher  ===============
  D  Chinese softshell turtle  ===============
B D               Zebra finch  ===============
B D                    Rhesus  NNNNNNNNNNNNNNN
B D             X. tropicalis  ===============
  D           Green seaturtle  ===============
B D       Medium ground finch  ===============
  D    White-throated sparrow  ===============
          Tibetan ground jay  ===============
B D                   Megabat  ---------------
B D                 Orangutan  NNNNNNNNNNNNNNN

Inserts between block 9 and 10 in window
  D              Rock pigeon 6bp
  D             Saker falcon 10bp
  D         Peregrine falcon 10bp
B D               Budgerigar 6bp
  D                   Parrot 6bp
  D            Scarlet macaw 6bp
  D             Mallard duck 4bp
B D                   Turkey 4bp
B D       American alligator 1bp
  D           Painted turtle 37bp
  D   Spiny softshell turtle 50bp

Alignment block 10 of 135 in window, 76384275 - 76384282, 8 bps 
B D                     Human  --------------gcccgcgc
B D                     Chimp  --------------gcccgcgc
B D                   Gorilla  --------------gcccgcgc
B D                    Gibbon  --------------gcccgcgc
B D       Crab-eating macaque  --------------gcccacgc
B D                    Baboon  --------------gcccacgc
B D              Green monkey  --------------gcccacgc
B D                  Marmoset  --------------gcccgcgc
B D           Squirrel monkey  --------------gcccgcgc
B D                  Bushbaby  --------------gcccgcat
B D                  Squirrel  --------------gcttgcac
       Lesser Egyptian jerboa  --------------ccctgcgc
                 Prairie vole  --------------ggctgcgc
               Golden hamster  --------------ggctgcgc
B D                     Mouse  --------------ggctgcgc
B D                       Rat  --------------ggctgcgc
B D            Naked mole-rat  --------------gcctgcgc
B D                Guinea pig  --------------gcctacg-
                   Chinchilla  --------------gtctgctc
             Brush-tailed rat  --------------gcctgcgc
B D                    Rabbit  --------------gattcctg
B D                      Pika  --------------ggttttct
B D                       Pig  --------------gtttgtgc
B D                   Dolphin  --------------gcccgtgc
                 Killer whale  --------------gcccgtgc
B D                  Elephant  --------------cctagtgc
          Cape elephant shrew  --------------gctggtg-
             Cape golden mole  --------------tctagcgg
B D                 Armadillo  --------------tcctgcgg
B D                   Opossum  --------------aacca---
B D           Tasmanian devil  --------------actca---
B D                  Platypus  --------------gccggcgc
  D              Saker falcon  --------------ctctttgc
  D          Peregrine falcon  --------------ctctttgc
  D       Collared flycatcher  ------------------gcgc
B D               Zebra finch  ------------------gtgc
B D                Budgerigar  --------------tttagtgc
  D                    Parrot  --------------tttggtgc
  D             Scarlet macaw  --------------tttggtgc
  D              Mallard duck  --------------ttcggggc
B D                    Turkey  --------------caggggga
B D        American alligator  --------------------g-
  D            Painted turtle  --------------catag---
  D    Spiny softshell turtle  --------------cgcgg---
B D                 Tetraodon  ccatccagaagatctcct----
B D                      Fugu  agatct------ccgcgt----
B D                    Tenrec  ======================
B D                  Hedgehog  ----------------------
B D           Chinese hamster  ======================
            Tibetan antelope  ======================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNN
B D                     Horse  ----------------------
               Domestic goat  ======================
B D                     Sheep  ======================
B D                       Cow  ----------------------
B D                    Alpaca  ======================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ======================
B D          White rhinoceros  ----------------------
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ======================
B D                       Dog  ----------------------
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNN
B D                  Microbat  ----------------------
               Big brown bat  ----------------------
              Bactrian camel  ======================
B D                     Panda  ----------------------
            Black flying-fox  ======================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================
B D                Coelacanth  ======================
B D                   Wallaby  ======================
B D                    Lizard  ======================
          Southern platyfish  ======================
  D               Rock pigeon  ======================
B D                   Chicken  ======================
B D              Atlantic cod  ======================
  D  Chinese softshell turtle  ======================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================
  D           Green seaturtle  ======================
B D       Medium ground finch  ======================
  D    White-throated sparrow  ======================
          Tibetan ground jay  ======================
B D                   Megabat  ----------------------
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNN

Inserts between block 10 and 11 in window
  D             Saker falcon 28bp
  D         Peregrine falcon 28bp
  D      Collared flycatcher 21bp
B D              Zebra finch 11bp
B D               Budgerigar 9bp
  D                   Parrot 9bp
  D            Scarlet macaw 19bp
  D           Painted turtle 2bp
  D   Spiny softshell turtle 2bp

Alignment block 11 of 135 in window, 76384283 - 76384285, 3 bps 
B D                     Human  ---ctc
B D                     Chimp  ---ctc
B D                   Gorilla  ---ctc
B D                    Gibbon  ---ctc
B D       Crab-eating macaque  ---ctc
B D                    Baboon  ---ctc
B D              Green monkey  ---ctc
B D                  Marmoset  ---ctc
B D           Squirrel monkey  ---ctc
B D                  Bushbaby  ---ctc
B D                  Squirrel  ---ctc
       Lesser Egyptian jerboa  ---ct-
                 Prairie vole  ---c--
               Golden hamster  ---c--
B D                     Mouse  ---c--
B D                       Rat  ---c--
B D            Naked mole-rat  ---ctc
B D                Guinea pig  ---ctc
                   Chinchilla  ---ctc
             Brush-tailed rat  ---ctc
B D                    Rabbit  ---ggg
B D                      Pika  ---ccc
B D                       Pig  ---ctc
B D                   Dolphin  ---ctc
                 Killer whale  ---ctc
B D                       Cow  -----c
B D                     Horse  ---cgt
B D          White rhinoceros  ---cag
B D                     Panda  ---cgc
               Pacific walrus  ---cgg
B D                   Megabat  ---cgg
                Big brown bat  ---ggg
B D                  Microbat  ---ggg
B D                  Hedgehog  ----cg
B D                  Elephant  ---cgc
          Cape elephant shrew  ---aac
             Cape golden mole  ---cgc
B D                 Armadillo  ---ggc
B D                   Opossum  ---cgt
B D           Tasmanian devil  ---ccc
B D                  Platypus  ---ccc
  D              Saker falcon  ---c--
  D          Peregrine falcon  ---c--
  D       Collared flycatcher  ---c--
           Tibetan ground jay  ---c--
B D                Budgerigar  ---c--
  D                    Parrot  ---c--
  D              Mallard duck  ---t--
B D                    Turkey  ---t--
B D        American alligator  ---c--
  D            Painted turtle  ---c--
  D    Spiny softshell turtle  ---c--
B D                 Tetraodon  c-ct--
B D                      Fugu  cacc--
B D                    Tenrec  ======
B D           Chinese hamster  ======
            Tibetan antelope  ======
B D                     Shrew  NNNNNN
        David's myotis (bat)  NNNNNN
               Domestic goat  ======
B D                     Sheep  ======
B D                    Alpaca  ======
             Star-nosed mole  NNNNNN
B D                   Manatee  ======
          Chinese tree shrew  NNNNNN
B D                       Dog  ------
B D                       Cat  NNNNNN
              Bactrian camel  ======
            Black flying-fox  ======
B D                   Ferret   NNNNNN
                Weddell seal  NNNNNN
      Yellowbelly pufferfish  ======
                    Aardvark  NNNNNN
B D                    Medaka  ======
B D                Coelacanth  ======
  D             Scarlet macaw  ======
B D                   Wallaby  ======
B D                    Lizard  ======
          Southern platyfish  ======
  D               Rock pigeon  ======
B D                   Chicken  ======
B D              Atlantic cod  ======
  D  Chinese softshell turtle  ======
B D               Zebra finch  ======
B D                    Rhesus  NNNNNN
B D             X. tropicalis  ======
  D           Green seaturtle  ======
B D       Medium ground finch  ======
  D    White-throated sparrow  ======
B D                 Orangutan  NNNNNN

Inserts between block 11 and 12 in window
  D             Saker falcon 14bp
  D         Peregrine falcon 14bp
          Tibetan ground jay 1bp
B D               Budgerigar 9bp
  D                   Parrot 9bp
  D             Mallard duck 24bp
B D                   Turkey 22bp
  D           Painted turtle 6bp
  D   Spiny softshell turtle 6bp

Alignment block 12 of 135 in window, 76384286 - 76384301, 16 bps 
B D                     Human  cgtc------------t---gcgctg---------cgcgg---------
B D                     Chimp  cgtc------------t---gcgctg---------cgcgg---------
B D                   Gorilla  cgtc------------t--ggcgctg---------cgcgg---------
B D                    Gibbon  catc------------t---gcgctg---------cgcgg---------
B D       Crab-eating macaque  cgcc------------t---gcgc-----------cgcgg---------
B D                    Baboon  cgcc------------t---gcgc-----------cgcgg---------
B D              Green monkey  cgcc------------t---gcgc-----------tgcgg---------
B D                  Marmoset  tgct------------t---gctgcg---------cgcgg---------
B D           Squirrel monkey  tgct------------t---gcgctg---------cgcgg---------
B D                  Bushbaby  tgat------------t---gcgttg---------cgctc---------
B D                  Squirrel  ggct------------t---gtgcgg---------cgagc---------
       Lesser Egyptian jerboa  -----------------------------------cgagc---------
                 Prairie vole  ---------------------------------------c---------
               Golden hamster  ---------------------------------------c---------
B D                     Mouse  ---------------------------------------c---------
B D                       Rat  ---------------------------------------c---------
B D            Naked mole-rat  ctcc------------t---gtgcgg---------ggtgc---------
B D                Guinea pig  ctcc------------t---gcgcga---------ggtgt---------
                   Chinchilla  ctcc------------g---gtgctg---------gttgc---------
             Brush-tailed rat  ctcc------------g---gtgctg---------ggtgc---------
B D                    Rabbit  ggcc------------c---gcgctg---------cgcgc---------
B D                      Pika  ggcc------------c---gcgttg---------cgcgc---------
B D                       Pig  ggcc------------c---gcgctg---------cgcgt---------
B D                   Dolphin  ggcc------------t---gcgctg---------cgcgt---------
                 Killer whale  ggcc------------t---gcgctg---------cgcgt---------
B D                       Cow  ggcc------------t---gtgatg---------cgcgt---------
B D                     Horse  ggcc------------t---gcgctg---------cgcgt---------
B D          White rhinoceros  ggcc------------t---gcgctg---------cgcgt---------
B D                       Dog  --------------------gcgccgcggcgagttcgcgt---------
B D                     Panda  ggcc------------t---gcgctg---------cgcgt---------
               Pacific walrus  ggccgctccgactctgg---gcgccg---------cgcgt---------
B D                   Megabat  ggcc------------t---gcgctg---------cgcct---------
                Big brown bat  agcc------------t---gcgccg---------cgcgt---------
B D                  Microbat  agac------------t---gcgctg---------cgcgt---------
B D                  Hedgehog  ggcc------------t---ctgctc---------c-------------
B D                  Elephant  ccgc------------ccggctgctg---------cgaca---------
          Cape elephant shrew  aggc------------ccgggc-ctg---------caaga---------
             Cape golden mole  gagg------------ctaggtgtag---------cccag---------
B D                 Armadillo  cgcc------------gagggtcctg---------caggg---------
B D                   Opossum  gggg------------t---gccctg---------agctt---------
B D           Tasmanian devil  cggt------------g---gccttg---------catgt---------
B D                  Platypus  cgtc------------c---ttgaga---------ctcgc---------
B D                 Tetraodon  -------------------------------cacccggccggaccaggg
B D                      Fugu  -------------------------------cggccggacgaa----gg
B D                    Tenrec  =================================================
B D           Chinese hamster  =================================================
            Tibetan antelope  =================================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  =================================================
B D                     Sheep  =================================================
B D                    Alpaca  =================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  =================================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  =================================================
            Black flying-fox  =================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  =================================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  =================================================
B D                Coelacanth  =================================================
B D                    Turkey  =================================================
  D              Mallard duck  =================================================
  D             Scarlet macaw  =================================================
  D                    Parrot  =================================================
B D                Budgerigar  =================================================
B D                   Wallaby  =================================================
  D    Spiny softshell turtle  =================================================
B D                    Lizard  =================================================
          Southern platyfish  =================================================
  D          Peregrine falcon  =================================================
  D               Rock pigeon  =================================================
  D            Painted turtle  =================================================
B D                   Chicken  =================================================
B D              Atlantic cod  =================================================
  D       Collared flycatcher  =================================================
  D  Chinese softshell turtle  =================================================
B D               Zebra finch  =================================================
  D              Saker falcon  =================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  =================================================
  D           Green seaturtle  =================================================
B D       Medium ground finch  =================================================
B D        American alligator  -------------------------------------------------
  D    White-throated sparrow  =================================================
          Tibetan ground jay  =================================================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 12 and 13 in window
         Cape elephant shrew 1bp
B D                  Opossum 26bp
B D          Tasmanian devil 4bp
B D                 Platypus 3bp

Alignment block 13 of 135 in window, 76384302 - 76384321, 20 bps 
B D                     Human  ------tcgctttc----gc-----gcgc------cccaga
B D                     Chimp  ------tcgctttc----gc-----gcgc------cccaga
B D                   Gorilla  ------tcgctttc----gc-----gcgc------cccaga
B D                    Gibbon  ------tcgctttc----gc-----gcgc------cccaga
B D       Crab-eating macaque  ------tcactttc----gc-----gcgc------cccaga
B D                    Baboon  ------tcactttc----gc-----gcgc------cccaga
B D              Green monkey  ------tcactttc----gc-----gcgc------cccaga
B D                  Marmoset  ------tcactttc----gc-----gcgc------cccaga
B D           Squirrel monkey  ------tcactttc----gc-----gcgc------cccaga
B D                  Bushbaby  ------tcaccttc----gc-----gc--------------
B D                  Squirrel  ------tcaccttc----gc-----gcgc------cgggga
       Lesser Egyptian jerboa  ------tcactatc----gc-----gttc------cgggga
                 Prairie vole  ------tcgctttc----gc---------------------
               Golden hamster  ------tcactttc----gc-----gctc------ccggga
B D                     Mouse  ------tcgctttc----gc-----gctc------cgcgga
B D                       Rat  ------tcactttc----gc-----gctc------cgtgga
B D            Naked mole-rat  ------tcacctgc----gc-----gcgc------ctggga
B D                Guinea pig  ------tcaccgtc----gc-----gcgc------ctggga
                   Chinchilla  ------tcatcttc----gt-----gcgc------ctggaa
             Brush-tailed rat  ------tcaccgtc----gc-----gcgc------ctggga
B D                    Rabbit  ------tcgctttc----gc-----gccc------ccgacg
B D                      Pika  ------t-gccggc----acaggctgcag------ccgccg
B D                       Pig  ------tcacaccc----gc-----gcgc------tccaga
B D                   Dolphin  ------tcaccgtc----gc-----gcgc------ccggga
                 Killer whale  ------tcaccgtc----gc-----gcgc------ccggga
B D                       Cow  ------tcaccctt----gc-----gcgc------ccggga
B D                     Horse  ------tcaccctc----gc-----tcgc------ccggga
B D          White rhinoceros  ------tcaccctc----ac-----gcgc------ccggga
B D                       Dog  ------cc-cccct----gc-----gc--------------
B D                     Panda  ------tcaccctc----gc-----gcg-------caggga
               Pacific walrus  ------tcaccctt----gc-----gcgc------ccggga
B D                   Megabat  ------tcaccttc----ac-----gtgc------ccgcga
                Big brown bat  ------tcaccttc----ac-----gcgc------ccggaa
B D                  Microbat  ------tcaccctc----ac-----gcgc------cccgaa
B D                  Hedgehog  ---------cctcc----gc-----gggc------c-----
B D                  Elephant  ------ccgagcgc-----c-----tcgg------tctgag
          Cape elephant shrew  ------ccgcgccc-----t-----ctgggttgtacatggg
             Cape golden mole  ------gggcgccc-ctagc-----ctgg------tctgtg
B D                 Armadillo  ------cgccgagc-----c-----acgc------gctcgg
B D           Tasmanian devil  --------------------cggctgcgc------cctaga
B D                  Platypus  ------accccttctcgaga-----gtgc------cctc--
  D              Saker falcon  ------gcaccctg----gt-----gggc------acctac
  D          Peregrine falcon  ------gcaccctg----gt-----gggc------acctac
  D       Collared flycatcher  --------------------------cat------cccagc
B D               Zebra finch  --------------------------gga------cccagc
           Tibetan ground jay  -----------tgt----gt-----gggc------acttgt
B D                Budgerigar  ------gcggctgt----gt-----ccag------cccagc
  D                    Parrot  ------gcgactgt----gt-----ccag------cccagc
  D             Scarlet macaw  ------gcgactgt----gt-----ccag------cccagc
  D              Mallard duck  ------ggggtttg----ga-----gtgg------ccgagc
B D                    Turkey  ------ggagctga----gc-----ggga------ttagaa
B D        American alligator  -------cggccga----g-------gag------ccctgt
  D            Painted turtle  ------gattcaag----at-----aggg------ttgggg
  D    Spiny softshell turtle  ------gagacacg----gg-----gggc------ttggtc
B D                 Tetraodon  tagtcttccacctg----ac-----g---------------
B D                      Fugu  tagtgtttcacctg----gc-----g---------------
B D                    Tenrec  =========================================
B D           Chinese hamster  =========================================
            Tibetan antelope  =========================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  =========================================
B D                     Sheep  =========================================
B D                    Alpaca  =========================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  =========================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  =========================================
            Black flying-fox  =========================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  =========================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  =========================================
B D                Coelacanth  =========================================
B D                   Wallaby  =========================================
B D                    Lizard  =========================================
          Southern platyfish  =========================================
  D               Rock pigeon  =========================================
B D                   Chicken  =========================================
B D              Atlantic cod  =========================================
  D  Chinese softshell turtle  =========================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  =========================================
  D           Green seaturtle  =========================================
B D       Medium ground finch  =========================================
B D                   Opossum  =========================================
  D    White-throated sparrow  =========================================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 13 and 14 in window
      Lesser Egyptian jerboa 9bp
B D                      Dog 4bp
B D          Tasmanian devil 5bp
B D                 Platypus 6bp

Alignment block 14 of 135 in window, 76384322 - 76384336, 15 bps 
B D                     Human  ---------cactgcgc------------tcgcg----gc
B D                     Chimp  ---------cactgcgc------------tcgcg----gc
B D                   Gorilla  ---------cactgcg------------------------
B D                    Gibbon  ---------cactgcgc------------tcgcg----gc
B D       Crab-eating macaque  ---------cactgcgc------------tcgcg----gc
B D                    Baboon  ---------cactgcgc------------tcgcg----gc
B D              Green monkey  ---------cactgcgc------------tcgcg----gc
B D                  Marmoset  ---------cgctgcac------------tcgcg----gc
B D           Squirrel monkey  ---------cgctgtcc------------tcgcg----gc
B D                  Bushbaby  ----------------c------------tcg--------
B D                  Squirrel  ---------cgctgtgc------------tc---------
       Lesser Egyptian jerboa  ---------cgcgacgc------------tcgtg----gc
                 Prairie vole  ------------gctac------------ttaaa----gc
               Golden hamster  ---------cgtgctgc------------ttaaa----gc
B D                     Mouse  ---------tgcgctgc------------ttcag----gc
B D                       Rat  ---------tgcgctgc------------ttcag----gc
B D            Naked mole-rat  ---------tactgtgt------------ccgggactcgc
B D                Guinea pig  ---------cgctgcgt------------ccggggcgcgc
                   Chinchilla  ---------ttctgcgt------------cccgggcgcgc
             Brush-tailed rat  ---------tgttgcgt------------cccgggcacgc
B D                    Rabbit  ---------cgcgccgc------------cagcg----gc
B D                      Pika  ---------ggcgccgc------------tagcg----gc
B D                       Pig  ---------cgctgcgc------------ccgcg----gt
B D                   Dolphin  ---------cgctgcgc------------tcgcg----gc
                 Killer whale  ---------cgctgcgc------------tcgcg----gc
B D                       Cow  ---------cgctgcgc------------tcgcg----gc
B D                     Horse  ---------cgcggccc------------tcgcg----gc
B D          White rhinoceros  ---------cgctgcgc------------tcgcg----gc
B D                     Panda  ---------cgctgaac------------tcgcg----gc
               Pacific walrus  ---------cgctgagc------------tcggg----gc
B D                   Megabat  ---------cgctgcgc------------tcgta----gg
                Big brown bat  ---------cgctgcgc------------tcgcg----gc
B D                  Microbat  ---------cgcggcgc------------tcgcg----gc
B D                  Hedgehog  ----------------t------------tcgc-------
B D                  Elephant  ---------cgctgcgc---------tcaccc--------
          Cape elephant shrew  ---------cgctgcgcgaggcgaggtgccgc--------
             Cape golden mole  ---------ctgtgcgc---------tcatcc--------
B D                 Armadillo  ---------ccccgcgc------------ccc--------
B D                   Opossum  ---------cgctgtgc------------tccgg----ga
B D           Tasmanian devil  ---------ggcctggc------------cccag----gg
B D                  Platypus  ---------ccttccga------------t----------
  D              Saker falcon  ---------------------------------------c
  D          Peregrine falcon  ---------------------------------------c
  D       Collared flycatcher  ---------------------------------------c
B D               Zebra finch  ---------------------------------------c
           Tibetan ground jay  ---------------------------------------c
B D                Budgerigar  ---------------------------------------c
  D                    Parrot  ---------------------------------------c
  D             Scarlet macaw  ---------------------------------------c
  D              Mallard duck  ---------------------------------------c
B D                    Turkey  ---------------------------------------c
B D        American alligator  ---------------------------------------t
  D            Painted turtle  ---------------------------------------c
  D    Spiny softshell turtle  ---------------------------------------c
B D                 Tetraodon  gactgcgtcggctgc-------------------------
B D                      Fugu  gactgtgtcggctgc-------------------------
B D                    Tenrec  ========================================
B D           Chinese hamster  ========================================
            Tibetan antelope  ========================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ========================================
B D                     Sheep  ========================================
B D                    Alpaca  ========================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ========================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Dog  ========================================
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ========================================
            Black flying-fox  ========================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ========================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ========================================
B D                Coelacanth  ========================================
B D                   Wallaby  ========================================
B D                    Lizard  ========================================
          Southern platyfish  ========================================
  D               Rock pigeon  ========================================
B D                   Chicken  ========================================
B D              Atlantic cod  ========================================
  D  Chinese softshell turtle  ========================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ========================================
  D           Green seaturtle  ========================================
B D       Medium ground finch  ========================================
  D    White-throated sparrow  ========================================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 14 and 15 in window
B D                      Pig 14bp
B D                  Dolphin 14bp
                Killer whale 14bp
B D                      Cow 14bp
B D                    Horse 14bp
B D         White rhinoceros 14bp
B D                    Panda 79bp
              Pacific walrus 14bp
B D                  Megabat 14bp
               Big brown bat 14bp
B D                 Microbat 14bp
B D                 Platypus 4bp
  D             Saker falcon 14bp
  D         Peregrine falcon 14bp
  D      Collared flycatcher 22bp
B D              Zebra finch 12bp
          Tibetan ground jay 37bp
B D               Budgerigar 21bp
  D                   Parrot 6bp
  D            Scarlet macaw 21bp
  D             Mallard duck 17bp
B D                   Turkey 9bp
B D       American alligator 20bp
  D           Painted turtle 19bp
  D   Spiny softshell turtle 14bp

Alignment block 15 of 135 in window, 76384337 - 76384379, 43 bps 
B D                     Human  cgggcccg-----------------ggac-tccgcg------------------------------cct-
B D                     Chimp  cgggcccg-----------------ggac-tccgcg------------------------------cct-
B D                   Gorilla  -------------------------------------------------------------------ct-
B D                    Gibbon  cgggcccg-----------------ggac-tccgcg------------------------------cct-
B D       Crab-eating macaque  cgggccca-----------------ggac-tccgcg------------------------------cct-
B D                    Baboon  cgggcccg-----------------ggac-tccgcg------------------------------cct-
B D              Green monkey  cgggccca-----------------ggac-tccgcg------------------------------cct-
B D                  Marmoset  cgggccc------------------ggac-tccgtg------------------------------cct-
B D           Squirrel monkey  cgggccc------------------ggac-tccctg------------------------------cct-
B D                  Bushbaby  -------------------------------------------------------------------cc-
B D                  Squirrel  ----------------------------c-tcca------------------------------------
       Lesser Egyptian jerboa  cgggcccg-----------------ggac-tccacg------------------------------ccc-
                 Prairie vole  cgtgcgcg-----------------gaac-tccacg------------------------------cct-
               Golden hamster  cgtgctcg-----------------gaac-tccacg------------------------------cct-
B D                     Mouse  cgggctca-----------------gaac-cccacc------------------------------tct-
B D                       Rat  cgagctcg-----------------gaac-cccgcg------------------------------cct-
B D            Naked mole-rat  cgttccca-----------------ggat-tcagc-------------------------------cct-
B D                Guinea pig  agttccgg-----------------ggat-tcaccg------------------------------cct-
                   Chinchilla  cgttcccg-----------------ggat-tcacgg------------------------------cct-
             Brush-tailed rat  cgttcctg-----------------ggat-tcaccg------------------------------ctt-
B D                    Rabbit  cgggcccg-----------------agac-tcggcg------------------------------cct-
B D                      Pika  cgggtccg-----------------agac-tcgatg------------------------------ctt-
B D                       Pig  cgggcctg-----------------gggc-tcggcg------------------------------cct-
B D                   Dolphin  cgggcctg-----------------gggc-tccgcg------------------------------cct-
                 Killer whale  cgggcctg-----------------gggc-tccgcg------------------------------cct-
B D                       Cow  cgggcctg-----------------gggc-tccgcg------------------------------cct-
B D                     Horse  cgggtccg-----------------gggc-tctgcg------------------------------cct-
B D          White rhinoceros  cgggttcg-----------------ggcc-tctgcg------------------------------cct-
B D                       Dog  gggacgct-----------------gagc-cccgcg------------------------------cct-
               Pacific walrus  cggacccg-----------------gggc-tctgcg------------------------------cct-
B D                   Megabat  caggcccg-----------------ggac-tccccg------------------------------cct-
                Big brown bat  cgggttcg-----------------gggc-t-tggg------------------------------ccg-
B D                  Microbat  c-ggcgcg-----------------ggac-t-tggg------------------------------cct-
B D                  Hedgehog  ----------------------------------------------------------------------
B D                  Elephant  cttgcgct-----------------ggac-tgtgca-------------------------------ct-
          Cape elephant shrew  ccggaact-----------------ggga--gcgca----------------ggcagggag----accc-
             Cape golden mole  ctcacccc-----------------agac-attgaa-------------------------------tt-
B D                 Armadillo  cgcgccct-----------------ggaa-gccgcc-------------------------------ct-
B D                   Opossum  -agattcg-----g-----------gagc-tctccg------------------------------act-
B D           Tasmanian devil  -gggcctg-----gtccctctggctgagg-tctccg------------------------------gttg
B D                  Platypus  caagccca-----------------tgac-ttctcccagttaccgacacgagggcgtaaga----accc-
  D              Saker falcon  caggtcac-----------------ggct-tagggg------------------------------gcc-
  D          Peregrine falcon  caggtcac-----------------ggct-tagggg------------------------------gcc-
  D       Collared flycatcher  ctgaccca-----------------agct-ggagtg------------------------------gcc-
B D               Zebra finch  cgggtc-------------------agcc-ggg-------------------------------------
           Tibetan ground jay  caggga-------------------agct-ctgaag------------------------------ggc-
B D                Budgerigar  ctgcccca-----------------agct-ggggca------------------------------gcc-
  D                    Parrot  gtgccccg-----------------agct-ggggca------------------------------gcc-
  D             Scarlet macaw  ctgccctg-----------------agct-ggggca------------------------------gcc-
  D              Mallard duck  ctgctggg-----------------tgct-gggggg------------------------------agc-
B D                    Turkey  ------gg-----------------cacc-gtgcgg----------------------------------
B D        American alligator  ccggacct-----------------agcg-aaggca------------------------------gac-
  D            Painted turtle  caggtgag-----------------cgctggggtct------------------------------ctc-
  D    Spiny softshell turtle  tcagcgat-----------------ggcc-ggatcg------------------------------cac-
B D                 Tetraodon  cgggcgcacaaagggcc--------ggac-ggcgcg----------------gacgtcggggcctactt-
B D                      Fugu  cgggcgcacggagggcc--------ggac-ggcgcg----------------gacgccggggcctactt-
B D                    Tenrec  ======================================================================
B D           Chinese hamster  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ======================================================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ======================================================================
B D                     Panda  ======================================================================
            Black flying-fox  ======================================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -cgc---------ggc---------c----------------tg-----------ccgc---ctc-----
                        Chimp  -cgc---------ggc---------c----------------tg-----------ccgc---ctc-----
                      Gorilla  -cgc---------ggc---------c----------------tg-----------ccgc---ctc-----
                       Gibbon  -cgc---------ggc---------a----------------tg-----------tcgc---ctc-----
          Crab-eating macaque  -cgt---------tgc---------c----------------ag-----------tcgc---cgc-----
                       Baboon  -cgt---------tgc---------c----------------tg-----------tcgc---cgc-----
                 Green monkey  -cgt---------tgc---------c----------------tg-----------tcgc---cgc-----
                     Marmoset  -cgt---------cgc---------t----------------tg-----------tcgc---cgc-----
              Squirrel monkey  -cct---------tgc---------c----------------tg-----------tcgc---cgc-----
                     Bushbaby  -agt---------tgc---------c----------------t------------ccgc---cgc-----
                     Squirrel  -------------------------g----------------tc-----------cctc---ggc-----
       Lesser Egyptian jerboa  -cac---------cgacctcttcctc----------------ct-----------cctc---cgc-----
                 Prairie vole  -cgc---------tga---------t----------------tt-----------cctg---agc-----
               Golden hamster  -cgc---------tgg---------t----------------tt-----------cctg---agc-----
                        Mouse  -tgc---------gga---------c----------------tt-----------ccta---agc-----
                          Rat  -tgc---------cca---------c----------------tt-----------cctg---agt-----
               Naked mole-rat  -cg----------------------g----------------tt-----------ctt------------
                   Guinea pig  -ta----------------------g-----------------t-----------ctt------------
                   Chinchilla  -cg----------------------g----------------ct-----------ttt------------
             Brush-tailed rat  -tg----------------------g----------------tt-----------ctt------------
                       Rabbit  -cac---------ggg---------c----------------ta-----------cccg---cgc-----
                         Pika  -cgc---------ccg---------c---------------gtc-----------tccg---cgc-----
                          Pig  -tgt---------caa---------c----------------gg-----------cctc---cgc-----
                      Dolphin  -cgc---------caa---------c----------------gg-----------cctc---cac-----
                 Killer whale  -cgc---------caa---------c----------------gg-----------cctc---cgc-----
                          Cow  -agc---------cag---------c----------------ag-----------cctc---cac-----
                        Horse  -tgc---------cga---------c----------------ta-----------cctc---cgc-----
             White rhinoceros  -cgc---------cga---------c----------------tg-----------cctc---cac-----
                          Dog  -cgc---------cga------------------------------------------------------
               Pacific walrus  -tgc---------cga------------------------------------------------------
                      Megabat  -cgc---------caa---------c----------------tg-----------cctc---cgc-----
                Big brown bat  -cgc---------cga---------t----------------aa-----------cctt---ggc-----
                     Microbat  -cgc---------gga---------t----------------ca-----------cctt---cgc-----
                     Hedgehog  --------------------------------------------------------ctc---c-------
                     Elephant  -cgc---------ggc------------------------------------------------------
          Cape elephant shrew  -cgc---------gcc------------------------------------------------------
             Cape golden mole  -tgc---------tgc------------------------------------------------------
                    Armadillo  -ggc---------ggc------------------------------------------------------
                      Opossum  -tgg---------agg---------a----------------tg-----------ccct-----c-----
              Tasmanian devil  ccgg---------acc---------t----------------tgtgcagctgctcccct---aac-----
                     Platypus  -cgc---------gac---------g----------------at-----------ccgttggcga-----
                 Saker falcon  ------------------------------------------ca-----------cagc---tgg-----
             Peregrine falcon  ------------------------------------------ca-----------cagc---tgg-----
          Collared flycatcher  -tct---------gct---------c-------tgggtgcttca-----------ctgc---ttt-----
                  Zebra finch  ----------------------------------aggcgcggga-----------cggc---ggtgggaa
           Tibetan ground jay  -tgg---------gag---------c--------agggtcagca-----------cggc---tgg-----
                   Budgerigar  -tct---------gcc---------c----------------tg-----------ctgc---tgt-----
                       Parrot  -tct---------gcc---------c----------------cg-----------ctgc---tgt-----
                Scarlet macaw  -tct---------gcc---------c----------------cg-----------ctgc---tgt-----
                 Mallard duck  -tca---------gct---------c------gcggggctctgc-----------tccc---agc-----
                       Turkey  -------------------------c------acggggccccca-----------tccc---cgc-----
           American alligator  -aga---------gac------aggc----------------cc-----------gcgc---agc-----
               Painted turtle  -tccaggttaggtgcc---------a------------------------------------ggc-----
       Spiny softshell turtle  -tca----cagatgcc---------acatccattgcaatgccaa-----------ttgc---aga-----
                    Tetraodon  -cac---------agc---------c----------------ta-----------tttc---ta------
                         Fugu  -cac---------cgc---------c----------------ta-----------tttc---ta------
                       Tenrec  ======================================================================
              Chinese hamster  ======================================================================
             Tibetan antelope  ======================================================================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Manatee  ======================================================================
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  ======================================================================
                        Panda  ======================================================================
             Black flying-fox  ======================================================================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ======================================================================
                     Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Medaka  ======================================================================
                   Coelacanth  ======================================================================
                      Wallaby  ======================================================================
                       Lizard  ======================================================================
           Southern platyfish  ======================================================================
                  Rock pigeon  ======================================================================
                      Chicken  ======================================================================
                 Atlantic cod  ======================================================================
     Chinese softshell turtle  ======================================================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  ======================================================================
              Green seaturtle  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  --agctc--a
                        Chimp  --agctc--a
                      Gorilla  --agctc--a
                       Gibbon  --agctc--a
          Crab-eating macaque  --agctc--a
                       Baboon  --agctc--a
                 Green monkey  --agctc--a
                     Marmoset  --agctc--a
              Squirrel monkey  --agctc--a
                     Bushbaby  --atctc---
                     Squirrel  --ggcgc--c
       Lesser Egyptian jerboa  --tgctc--c
                 Prairie vole  --tgttc--c
               Golden hamster  --cgttcctc
                        Mouse  --tgttc--c
                          Rat  --tgctc--c
               Naked mole-rat  ----ttt--c
                   Guinea pig  ----tcc--c
                   Chinchilla  ----ttc--c
             Brush-tailed rat  ----ttc--c
                       Rabbit  --cgttc--c
                         Pika  --cgctc--c
                          Pig  --ccc-----
                      Dolphin  --ctc-----
                 Killer whale  --ctc-----
                          Cow  --gtc-----
                        Horse  --ctctc--c
             White rhinoceros  --ctctc--c
                          Dog  ---------c
               Pacific walrus  ---------c
                      Megabat  --ctctc--c
                Big brown bat  --ctctc--c
                     Microbat  --ctcta--c
                     Hedgehog  ----------
                     Elephant  ----------
          Cape elephant shrew  ----------
             Cape golden mole  ----------
                    Armadillo  ----------
                      Opossum  --gagtc--a
              Tasmanian devil  --gactc---
                     Platypus  --gat-----
                 Saker falcon  ----------
             Peregrine falcon  ----------
          Collared flycatcher  --tcc-----
                  Zebra finch  gggcc-----
           Tibetan ground jay  --acc-----
                   Budgerigar  ---cc-----
                       Parrot  ---cc-----
                Scarlet macaw  ---cc-----
                 Mallard duck  --ccc-----
                       Turkey  --acc-----
           American alligator  --gcc-----
               Painted turtle  ----------
       Spiny softshell turtle  ----------
                    Tetraodon  ----------
                         Fugu  ----------
                       Tenrec  ==========
              Chinese hamster  ==========
             Tibetan antelope  ==========
                        Shrew  NNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNN
                Domestic goat  ==========
                        Sheep  ==========
                       Alpaca  ==========
              Star-nosed mole  NNNNNNNNNN
                      Manatee  ==========
           Chinese tree shrew  NNNNNNNNNN
                          Cat  NNNNNNNNNN
               Bactrian camel  ==========
                        Panda  ==========
             Black flying-fox  ==========
                      Ferret   NNNNNNNNNN
                 Weddell seal  NNNNNNNNNN
       Yellowbelly pufferfish  ==========
                     Aardvark  NNNNNNNNNN
                       Medaka  ==========
                   Coelacanth  ==========
                      Wallaby  ==========
                       Lizard  ==========
           Southern platyfish  ==========
                  Rock pigeon  ==========
                      Chicken  ==========
                 Atlantic cod  ==========
     Chinese softshell turtle  ==========
                       Rhesus  NNNNNNNNNN
                X. tropicalis  ==========
              Green seaturtle  ==========
          Medium ground finch  ==========
       White-throated sparrow  ==========
                    Orangutan  NNNNNNNNNN

Inserts between block 15 and 16 in window
B D                      Pig 2bp
B D                  Opossum 1bp
B D          Tasmanian devil 1bp
          Tibetan ground jay 3bp
B D                   Turkey 12bp

Alignment block 16 of 135 in window, 76384380 - 76384381, 2 bps 
B D                     Human  c-c
B D                     Chimp  c-c
B D                   Gorilla  c-c
B D                    Gibbon  c-c
B D       Crab-eating macaque  c-c
B D                    Baboon  c-c
B D              Green monkey  c-t
B D                  Marmoset  g-c
B D           Squirrel monkey  g-c
B D                  Squirrel  a-c
       Lesser Egyptian jerboa  t-c
                 Prairie vole  t-c
               Golden hamster  t-c
B D                     Mouse  t-c
B D                       Rat  t-c
B D            Naked mole-rat  agc
B D                Guinea pig  a-g
                   Chinchilla  c-c
             Brush-tailed rat  a-c
B D                    Rabbit  c-g
B D                      Pika  c-g
B D                   Dolphin  g-c
                 Killer whale  g-c
B D                       Cow  t-c
B D                     Sheep  c-c
B D                     Horse  t-c
B D          White rhinoceros  t-c
B D                       Dog  t-c
               Pacific walrus  t-c
B D                   Megabat  c-t
                Big brown bat  c-c
B D                  Microbat  c-c
B D                  Hedgehog  t-c
B D                   Opossum  -ga
B D           Tasmanian devil  -gc
B D                  Platypus  c-c
  D              Saker falcon  --t
  D          Peregrine falcon  --t
  D       Collared flycatcher  --c
B D               Zebra finch  --t
           Tibetan ground jay  --c
B D                Budgerigar  --t
  D                    Parrot  --t
  D             Scarlet macaw  --t
  D              Mallard duck  --a
B D        American alligator  --c
  D            Painted turtle  --t
  D    Spiny softshell turtle  --t
B D                 Tetraodon  c-c
B D                      Fugu  c-c
B D                    Tenrec  ===
B D           Chinese hamster  ===
B D                  Elephant  ---
            Tibetan antelope  ===
         Cape elephant shrew  ---
B D                     Shrew  NNN
        David's myotis (bat)  NNN
               Domestic goat  ===
B D                    Alpaca  ===
             Star-nosed mole  NNN
B D                 Armadillo  ---
B D                   Manatee  ===
          Chinese tree shrew  NNN
B D                       Cat  NNN
B D                  Bushbaby  ---
              Bactrian camel  ===
B D                     Panda  ===
            Black flying-fox  ===
B D                   Ferret   NNN
            Cape golden mole  ---
                Weddell seal  NNN
      Yellowbelly pufferfish  ===
                    Aardvark  NNN
B D                    Medaka  ===
B D                Coelacanth  ===
B D                    Turkey  ===
B D                   Wallaby  ===
B D                    Lizard  ===
          Southern platyfish  ===
  D               Rock pigeon  ===
B D                   Chicken  ===
B D              Atlantic cod  ===
  D  Chinese softshell turtle  ===
B D                    Rhesus  NNN
B D             X. tropicalis  ===
  D           Green seaturtle  ===
B D       Medium ground finch  ===
  D    White-throated sparrow  ===
B D                       Pig  ===
B D                 Orangutan  NNN

Inserts between block 16 and 17 in window
B D                  Opossum 19bp
B D          Tasmanian devil 24bp
  D             Saker falcon 15bp
  D         Peregrine falcon 15bp
  D      Collared flycatcher 15bp
B D              Zebra finch 15bp
          Tibetan ground jay 15bp
B D               Budgerigar 14bp
  D                   Parrot 14bp
  D            Scarlet macaw 14bp
  D             Mallard duck 15bp
B D       American alligator 15bp
  D           Painted turtle 19bp
  D   Spiny softshell turtle 24bp

Alignment block 17 of 135 in window, 76384382 - 76384428, 47 bps 
B D                     Human  ---------------------cggc-------c------aggtcgcggcgc-cgccttct---agcca--
B D                     Chimp  ---------------------cggc-------c------aggtcgcggcgc-cgccttct---agcca--
B D                   Gorilla  ---------------------cggc-------c------aggtcgcggcgc-cgccttct---agcca--
B D       Crab-eating macaque  ---------------------ccgc-------c------gggccgcggcgc-cgccttct---cgcca--
B D                    Baboon  ---------------------gggc-------c------gggccgcggcgc-cgccttct---cgcca--
B D              Green monkey  ---------------------cggc-------c------gggccgcggcgc-cgccttct---cgcca--
B D                  Marmoset  ---------------------ctgc-------a------gggccgcggcgc-cgccttct---cgctaaa
B D           Squirrel monkey  ---------------------ctgc-------a------aggccgcggcgc-cgccttct---cgccaaa
B D                  Bushbaby  ---------------------tggc-------c------ggggcgcggcgc-cgccttct---cgcca--
B D                  Squirrel  ---------------------ctac---------------------------------------------
       Lesser Egyptian jerboa  ---------------------cagc-------c------gggaggcggcgg-c-----------------
                 Prairie vole  ---------------------cagc-------t------tg-----------------------------
               Golden hamster  ---------------------cagc-------t------gc-----------------------------
B D                     Mouse  ---------------------cagc---------------------------------------------
B D                       Rat  ---------------------cagc---------------------------------------------
B D            Naked mole-rat  ---------------------ccgc---------------------------------------------
B D                Guinea pig  ---------------------ccgc---------------------------------------------
                   Chinchilla  ---------------------tcgc---------------------------------------------
             Brush-tailed rat  ---------------------ccgc---------------------------------------------
B D                    Rabbit  ---------------------ttac---------------------------------------------
B D                      Pika  ---------------------ttac---------------------------------------------
B D                       Pig  ---------------------------------------------cggcgc-cgcgttc----tcacg--
B D                   Dolphin  ---------------------ctgc-------c------gggctgcggcgc-cgccttc----cgccg--
                 Killer whale  ---------------------ctgc-------c------aggctgcggcgc-cgccttc----cgccg--
B D                       Cow  ---------------------ccgc-------c------cggccgcgtcgctcgccttc----ctact--
B D                     Sheep  ---------------------ccgc-------c------aggccgcgtcgctcgccttc----cttct--
B D                     Horse  ---------------------ctgc-------c------cggccgcggcgc-cgccttct---cgcag--
B D          White rhinoceros  ---------------------cggc-------c------tggccgcagcgc-cgccttct---cgccg--
B D                       Dog  ---------------------ccgc-------c------ccgc-gcggcgc-cgccttct---ctccg--
               Pacific walrus  ---------------------cggc-------c------ccgcggcggcac-cgccttct---cgccg--
B D                   Megabat  ---------------------cggc-------c------gggccgcggctc-caccttct---cgctg--
                Big brown bat  ---------------------cggc-------c------gggctgcggcac-cccctttg---cgccg--
B D                  Microbat  ---------------------cggc-------c------gggccgcggcgc-ccccttt----cgcca--
B D                  Hedgehog  ---------------------ccac-------c------gggccgtggcgc-cgccttctggcagctg--
B D                  Elephant  -----------------------------------------------gcgc-cactcccg----------
          Cape elephant shrew  ----------------------------------------------ggggc-cgctcccc----------
             Cape golden mole  -----------------------------------------------gcgc-cactccca----------
B D                 Armadillo  -----------------------------------------------gcgc-cgcccccc----------
B D                   Opossum  ---------------------gcac-------g------gagacaggacgg-------------------
B D           Tasmanian devil  ---------------------tccc-------c------ggggccggcggg-------------------
B D                  Platypus  ---------------------cgac-------cttccagaagactcgtcccgcgccgtcg---ggccg--
  D              Saker falcon  ---------------------cctcccccaaac------tgacttcaccct----gcagggc-caagg--
  D          Peregrine falcon  ---------------------cctcccccaaac------tgacttcaccct----gcagggc-caagg--
  D       Collared flycatcher  ---------------------cttt-------g------tgtctgcaaccc----actga---taagg--
B D               Zebra finch  ---------------------cctc-------a------gacccgc-------------------agg--
           Tibetan ground jay  ---------------------tctg-------g------gtgcttc-------------------agt--
B D                Budgerigar  ---------------------cctc-------a------tgtctggcaccc----actga---taagg--
  D                    Parrot  ---------------------cctc-------a------tgtctggcaccc----actga---taagg--
  D             Scarlet macaw  ---------------------cctc-------a------tgtctggcaccc----gctga---taagg--
  D              Mallard duck  ---------------------catc-------c------tgcctggtgctg----gctga---taagg--
B D                    Turkey  ---------------------c-------------------cgcggtgcagcagtcctcg---tgggg--
B D        American alligator  ---------------------ccgc-------g------ctcccccaggct----acagg-----aag--
  D            Painted turtle  ---------------------ctcc-------c------c-------------------g---ggctg--
  D    Spiny softshell turtle  ---------------------cttc-------c------tgcccccaccct----gtggg---tgcgg--
B D                 Tetraodon  cgttcaagaggcggtggatgagcgc-------c------ggggtggcccg--------------------
B D                      Fugu  cgttcaagaggcggtggatgagcgc-------c------ggggtggcccg--------------------
B D                    Tenrec  ======================================================================
B D           Chinese hamster  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ======================================================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ======================================================================
B D                     Panda  ======================================================================
            Black flying-fox  ======================================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -----------g-acgcc---taggacgagcg
                        Chimp  -----------g-acgcc---taggacgagcg
                      Gorilla  -----------g-acgcc---taggacgagcg
          Crab-eating macaque  -----------g-acgcc---taggacgagcg
                       Baboon  -----------g-acgcc---taggacgagcg
                 Green monkey  -----------g-acgcc---taggacgagcg
                     Marmoset  cagacgcttagg-atgcc---taggacgagcg
              Squirrel monkey  cagacgcttagg-atgcc---taggacgagcg
                     Bushbaby  -----------g-tcacc---tagaactagtg
                     Squirrel  ------------------------tatgagcg
       Lesser Egyptian jerboa  -----------g-gcagc---ggttccta-cg
                 Prairie vole  ------------------------ttct--cg
               Golden hamster  ------------------------tcct--cc
                        Mouse  --------------------------------
                          Rat  --------------------------------
               Naked mole-rat  --------------------------cgagcc
                   Guinea pig  --------------------------atggcg
                   Chinchilla  --------------------------cgagcg
             Brush-tailed rat  --------------------------cgaggg
                       Rabbit  ---------------------------aagca
                         Pika  ---------------------------aagcg
                          Pig  -----------ggtcgcc---tgctcccagc-
                      Dolphin  -----------g-tcgcc---tactcccagc-
                 Killer whale  -----------g-tcgcc---tactcccagc-
                          Cow  -----------g----------ggtccgaga-
                        Sheep  -----------g----------ggtccgaga-
                        Horse  -----------g-tcgcc---tactccgagcg
             White rhinoceros  -----------g-tcgcc---tactccgagcg
                          Dog  -----------g--------------------
               Pacific walrus  -----------g-tcgcc---cagtctgagcg
                      Megabat  -----------g-tcgcc---tactccggacg
                Big brown bat  -----------g-tcgcc---gactccgagcg
                     Microbat  -----------g-tcgcc---tgcgccgagcg
                     Hedgehog  -----------g-gcgtc---tgctccggccg
                     Elephant  -----------a-cagcc---tcctccgagcg
          Cape elephant shrew  -----------t-ccgcc---ttctcgaggtg
             Cape golden mole  -----------g-ccgct---tagtccgagcg
                    Armadillo  -----------t-ccgccgctccttccgcccg
                      Opossum  --------------------------------
              Tasmanian devil  --------------------------------
                     Platypus  -----------g-ccgag---actctccaacg
                 Saker falcon  -----------g--------------------
             Peregrine falcon  -----------g--------------------
          Collared flycatcher  -----------g--------------------
                  Zebra finch  -----------a--------------------
           Tibetan ground jay  -----------g--------------------
                   Budgerigar  -----------g--------------------
                       Parrot  -----------g--------------------
                Scarlet macaw  -----------g--------------------
                 Mallard duck  -----------g--------------------
                       Turkey  -----------g--------------------
           American alligator  -----------g--------------------
               Painted turtle  -----------g--------------------
       Spiny softshell turtle  -----------g--------------------
                    Tetraodon  --------------------------------
                         Fugu  --------------------------------
                       Tenrec  ================================
              Chinese hamster  ================================
             Tibetan antelope  ================================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  ================================
                       Alpaca  ================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Manatee  ================================
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  ================================
                        Panda  ================================
             Black flying-fox  ================================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ================================
                     Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Medaka  ================================
                   Coelacanth  ================================
                      Wallaby  ================================
                       Lizard  ================================
           Southern platyfish  ================================
                  Rock pigeon  ================================
                      Chicken  ================================
                 Atlantic cod  ================================
     Chinese softshell turtle  ================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  ================================
              Green seaturtle  ================================
          Medium ground finch  ================================
       White-throated sparrow  ================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 17 and 18 in window
  D             Saker falcon 14bp
  D         Peregrine falcon 14bp
  D      Collared flycatcher 10bp
B D              Zebra finch 6bp
          Tibetan ground jay 10bp
B D               Budgerigar 10bp
  D                   Parrot 10bp
  D            Scarlet macaw 10bp
  D             Mallard duck 3bp
B D                   Turkey 2bp
B D       American alligator 14bp
  D           Painted turtle 18bp
  D   Spiny softshell turtle 18bp

Alignment block 18 of 135 in window, 76384429 - 76384430, 2 bps 
B D                     Human  gc
B D                     Chimp  gc
B D                   Gorilla  gc
B D       Crab-eating macaque  gc
B D                    Baboon  gc
B D              Green monkey  gc
B D                  Marmoset  gc
B D           Squirrel monkey  gc
B D                  Bushbaby  gt
B D                  Squirrel  gc
       Lesser Egyptian jerboa  gc
                 Prairie vole  ac
               Golden hamster  ac
B D                     Mouse  ac
B D                       Rat  gt
B D            Naked mole-rat  gc
B D                Guinea pig  gc
                   Chinchilla  ta
             Brush-tailed rat  gc
B D                    Rabbit  gc
B D                      Pika  gc
B D                     Horse  gc
B D          White rhinoceros  gc
               Pacific walrus  gc
B D                   Megabat  gc
                Big brown bat  gc
B D                  Microbat  gc
B D                  Hedgehog  gc
B D                  Elephant  gc
          Cape elephant shrew  gt
             Cape golden mole  gt
B D                 Armadillo  gc
B D                  Platypus  gg
  D               Rock pigeon  gc
  D              Saker falcon  gt
  D          Peregrine falcon  gt
  D       Collared flycatcher  gt
B D               Zebra finch  gc
           Tibetan ground jay  ga
B D                Budgerigar  gt
  D                    Parrot  gt
  D             Scarlet macaw  gt
  D              Mallard duck  gc
B D                    Turkey  gc
B D        American alligator  gc
  D            Painted turtle  gc
  D    Spiny softshell turtle  ac
B D                 Tetraodon  gc
B D                      Fugu  gc
B D                    Tenrec  ==
B D           Chinese hamster  ==
            Tibetan antelope  ==
B D                     Shrew  NN
        David's myotis (bat)  NN
               Domestic goat  ==
B D                     Sheep  --
B D                       Cow  --
B D                    Alpaca  ==
             Star-nosed mole  NN
B D                   Manatee  ==
          Chinese tree shrew  NN
B D                       Dog  --
B D                       Cat  NN
                Killer whale  --
              Bactrian camel  ==
B D                     Panda  ==
            Black flying-fox  ==
B D                   Ferret   NN
B D                   Dolphin  --
                Weddell seal  NN
      Yellowbelly pufferfish  ==
                    Aardvark  NN
B D                    Medaka  ==
B D                Coelacanth  ==
B D                   Wallaby  ==
B D                    Lizard  ==
          Southern platyfish  ==
B D                   Chicken  ==
B D              Atlantic cod  ==
  D  Chinese softshell turtle  ==
B D                    Rhesus  NN
B D             X. tropicalis  ==
  D           Green seaturtle  ==
B D       Medium ground finch  ==
B D                   Opossum  --
  D    White-throated sparrow  ==
B D                       Pig  --
B D           Tasmanian devil  --
B D                    Gibbon  NN
B D                 Orangutan  NN

Alignment block 19 of 135 in window, 76384431 - 76384458, 28 bps 
B D                     Human  gg--------g------------ggcgc---------------gcttgccg-----------------c-
B D                     Chimp  gg--------g------------ggcgc---------------gcttgccg-----------------c-
B D                   Gorilla  gg--------g------------ggcgc---------------gcttgccg-----------------c-
B D       Crab-eating macaque  gg--------g------------ggcgc---------------gcttgccg-----------------c-
B D                    Baboon  gg--------g------------ggcgc---------------gcttgccg-----------------c-
B D              Green monkey  gg--------c------------ggcgc---------------gcttgccg-----------------c-
B D                  Marmoset  gg--------g------------ggcgc---------------gc-ggcca-----------------c-
B D                  Bushbaby  gg--------g------------ggctc---------------ac-tgtcg-----------------c-
B D                  Squirrel  gg--------g------------agcgc---------------gc-atccg-----------------c-
       Lesser Egyptian jerboa  cg--------gc-----------ggcgg---------------gc-acgcg-----------------c-
                 Prairie vole  ag--------g------------ggtgc---------------ac-aatcg-----------------a-
               Golden hamster  c---------g------------ggtgc---------------gc-aatcg-----------------t-
B D                     Mouse  c---------g------------ggcgc---------------ac-aatcg-----------------t-
B D                       Rat  cg--------g------------ggtgc---------------ac-aattc-----------------t-
B D            Naked mole-rat  gg--------g------------cgc--------------------------------------------
B D                Guinea pig  gg--------a------------ggcgc---------------gc-agccc-----------------c-
                   Chinchilla  gg--------c------------gaacc---------------gc-aggcg-----------------g-
             Brush-tailed rat  gg--------g------------ggcgc---------------gc-agacg-----------------g-
B D                    Rabbit  ggggacgcgcg------------ggtgc---------------gc-agccg-----------------c-
B D                      Pika  gg--------g------------ggtgc---------------ac-agtcg-----------------c-
B D                       Pig  ----------------------------------------------------------------------
B D                   Dolphin  ----------------------------------------------------------------------
                 Killer whale  ----------------------------------------------------------------------
B D                       Cow  ----------------------------------------------------------------------
B D                     Sheep  ----------------------------------------------------------------------
B D                     Horse  -----------ggg---------ggcgc---------------gt-ggcca-----------------g-
B D          White rhinoceros  -----------ggg---------ggcgc---------------gt-gacca-----------------g-
               Pacific walrus  -----------ggg---------cgcgc---------------gt-gaccg-----------------c-
B D                   Megabat  -----------ggg---------ggcgc---------------gt-ggtcg-----------------c-
                Big brown bat  -----------cgg---------ggcgc---------------gt-agtca-----------------c-
B D                  Microbat  -----------ggg---------ggcgc---------------gt-agtca-----------------c-
B D                  Hedgehog  -----------cgg---------tgtg-------------------------------------------
B D                  Elephant  -------------g---------g----------------------------------------------
          Cape elephant shrew  -------------g---------ggctc---------------tt-tggcg-----------------c-
             Cape golden mole  -------------g---------ggcta---------------gc-ggctg-----------------c-
B D                 Armadillo  -------------gccgtcc---gctta---------------cc-ggcca-----------------cc
B D                   Opossum  ----------------gttaagcgggct---------------gcggggcc-----------------g-
B D           Tasmanian devil  ----------------g------gggcc---------------gc-cggcg-----------------g-
B D                  Platypus  --------------------agggattc---------------cttcgccc-----------------a-
  D               Rock pigeon  -----------------------ggggg---------------gc-agccggccgcttcccctggccc--
  D              Saker falcon  -----------------------gggag---------------ct-cgaggcatgctgc-----------
  D          Peregrine falcon  -----------------------gggag---------------ct-cgaggcatgctgc-----------
  D       Collared flycatcher  -----------------------ggagg---------------gg-ggaac-cactggc-----------
B D               Zebra finch  -----------------------ggagg---------------ag-ggacg-cagccgc-----------
           Tibetan ground jay  -----------------------gcagc---------------tg-g---------ccc-----------
B D                Budgerigar  -----------------------ggggg---------------gc-agctg-atgctcc-----------
  D                    Parrot  -----------------------ggggg---------------gc-agcgg-atgctcc-----------
  D             Scarlet macaw  -----------------------ggggg---------------gc-agctg-atgctcc-----------
  D              Mallard duck  -----------------------ggaag---------------ga-aggcc-------------------
B D                    Turkey  -----------------------agtag-ccaacctcgtggccca-ggttc-------------------
B D        American alligator  -----------------------cgacg---------------cc-ggggc-------------------
  D            Painted turtle  -----------------------tggggtctctcc--------cc-aggc--------------------
  D    Spiny softshell turtle  -----------------------tgggg-ccaaca--------cg-aggc--------------------
B D                 Tetraodon  ----------------------------------------------------------------------
B D                      Fugu  ----------------------------------------------------------------------
B D                    Tenrec  ======================================================================
B D           Chinese hamster  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ======================================================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Dog  ----------------------------------------------------------------------
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ======================================================================
B D                     Panda  ======================================================================
            Black flying-fox  ======================================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ---------tt---------------------------------cctagga--cc
                        Chimp  ---------tt---------------------------------cctagga--cc
                      Gorilla  ---------tt---------------------------------cctaggc--cc
          Crab-eating macaque  ---------tt---------------------------------cctagga--cc
                       Baboon  ---------tt---------------------------------cctagga--cc
                 Green monkey  ---------tt---------------------------------cctagga--cc
                     Marmoset  ---------gt---------------------------------cgtgcga--cc
                     Bushbaby  --------------------------------------------cccacga--cc
                     Squirrel  ---------at---------------------------------cccaaga--ct
       Lesser Egyptian jerboa  ---------gc---------------------------------gcgcg-----c
                 Prairie vole  ---------gt---------------------------------ccaggga--tc
               Golden hamster  ---------gt---------------------------------ccgggga--tc
                        Mouse  ---------at---------------------------------ccgggga--tc
                          Rat  ---------gt---------------------------------ccaggga--tc
               Naked mole-rat  ------------------------------------------------gga--c-
                   Guinea pig  ---------ga---------------------------------cctggga--ct
                   Chinchilla  ---------g--------------------------------------gga--c-
             Brush-tailed rat  ---------gt---------------------------------cctagga--ct
                       Rabbit  ---------gc---------------------------------cccagga--cc
                         Pika  ---------gc---------------------------------cccaggagccc
                          Pig  ---------gt---------------------------------cccggga--ct
                      Dolphin  ---------gt---------------------------------cccggga--cc
                 Killer whale  ---------gt---------------------------------cccggga--cc
                          Cow  ---------gt---------------------------------ccccgga--cc
                        Sheep  ---------gt---------------------------------ccccaga--cc
                        Horse  ---------gt---------------------------------ccgggga--cc
             White rhinoceros  ---------gt---------------------------------tccaggt--cc
               Pacific walrus  ---------gt---------------------------------tccggga--cc
                      Megabat  ---------gc---------------------------------cgccgga--gc
                Big brown bat  ---------gc---------------------------------c-cgaga--cc
                     Microbat  ---------gc---------------------------------c-cggga--cc
                     Hedgehog  ----------------------------------------------cgggc--tc
                     Elephant  -------------------------------------------------------
          Cape elephant shrew  ----------t---------------------------------cccggga--cg
             Cape golden mole  ---------at---------------------------------gctggga--tc
                    Armadillo  tccccccggct---------------------------------gcggggg--cc
                      Opossum  ---------gc---------------------------------ctggaag--ct
              Tasmanian devil  ---------gca-------------------------------gctcggac--ct
                     Platypus  ---------gc---------------------------------cccac----cc
                  Rock pigeon  -------------------------------------------------------
                 Saker falcon  -------------------------------------------------------
             Peregrine falcon  -------------------------------------------------------
          Collared flycatcher  -------------------------------------------------------
                  Zebra finch  -------------------------------------------------------
           Tibetan ground jay  -------------------------------------------------------
                   Budgerigar  -------------------------------------------------------
                       Parrot  -------------------------------------------------------
                Scarlet macaw  -------------------------------------------------------
                 Mallard duck  -------------------------------------------------------
                       Turkey  -------------------------------------------------------
           American alligator  -------------------------------------------------------
               Painted turtle  -------------------------------------------------------
       Spiny softshell turtle  -------------------------------------------------------
                    Tetraodon  -----------agagggtggaacagtgctttcgggtcgcgctggtccagga--cc
                         Fugu  -----------agagagtggagcagtgctttcgggtcgcgctggtccagga--cc
                       Tenrec  =======================================================
              Chinese hamster  =======================================================
             Tibetan antelope  =======================================================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  =======================================================
                       Alpaca  =======================================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Manatee  =======================================================
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Dog  -------------------------------------------------------
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  =======================================================
                        Panda  =======================================================
             Black flying-fox  =======================================================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  =======================================================
                     Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Medaka  =======================================================
                   Coelacanth  =======================================================
                      Wallaby  =======================================================
                       Lizard  =======================================================
           Southern platyfish  =======================================================
                      Chicken  =======================================================
                 Atlantic cod  =======================================================
     Chinese softshell turtle  =======================================================
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  =======================================================
              Green seaturtle  =======================================================
          Medium ground finch  =======================================================
       White-throated sparrow  =======================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 19 and 20 in window
  D              Rock pigeon 23bp
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
  D      Collared flycatcher 10bp
B D              Zebra finch 11bp
          Tibetan ground jay 6bp
B D               Budgerigar 15bp
  D                   Parrot 16bp
  D            Scarlet macaw 16bp
  D             Mallard duck 39bp

Alignment block 20 of 135 in window, 76384459 - 76384459, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D                  Bushbaby  c
B D                  Squirrel  c
       Lesser Egyptian jerboa  c
                 Prairie vole  c
               Golden hamster  c
B D                     Mouse  c
B D                       Rat  c
B D                Guinea pig  c
             Brush-tailed rat  t
B D                    Rabbit  c
B D                      Pika  t
B D                       Pig  c
B D                   Dolphin  c
                 Killer whale  c
B D                       Cow  c
B D                     Sheep  t
B D                     Horse  c
B D          White rhinoceros  c
B D                       Dog  c
               Pacific walrus  c
B D                   Megabat  c
                Big brown bat  c
B D                  Microbat  c
B D                  Hedgehog  t
          Cape elephant shrew  t
             Cape golden mole  c
B D                 Armadillo  c
B D                   Opossum  t
B D           Tasmanian devil  t
B D                  Platypus  c
B D        American alligator  t
  D            Painted turtle  t
  D    Spiny softshell turtle  t
B D                 Tetraodon  c
B D                      Fugu  c
B D                    Tenrec  =
B D           Chinese hamster  =
B D                  Elephant  -
            Tibetan antelope  =
B D                     Shrew  N
        David's myotis (bat)  N
               Domestic goat  =
B D                    Alpaca  =
             Star-nosed mole  N
B D                   Manatee  =
                  Chinchilla  -
          Chinese tree shrew  N
B D                       Cat  N
B D            Naked mole-rat  -
              Bactrian camel  =
B D                     Panda  =
            Black flying-fox  =
B D                   Ferret   N
                Weddell seal  N
      Yellowbelly pufferfish  =
                    Aardvark  N
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
B D                    Lizard  =
          Southern platyfish  =
  D          Peregrine falcon  =
  D               Rock pigeon  =
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D           Squirrel monkey  N
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Rhesus  N
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                    Gibbon  N
B D                 Orangutan  N

Inserts between block 20 and 21 in window
  D           Painted turtle 1bp

Alignment block 21 of 135 in window, 76384460 - 76384506, 47 bps 
B D                     Human  g-ggcgg-----------g-------------a---------acca-g--ct------------------
B D                     Chimp  g-ggcgg-----------g-------------a---------acca-g--ct------------------
B D                   Gorilla  g-ggcgg-----------g-------------a---------acca-g--ct------------------
B D       Crab-eating macaque  c-ggtgg-----------g-------------a---------acca-g--cg------------------
B D                    Baboon  c-ggtgg-----------g-------------a---------acca-g--cg------------------
B D              Green monkey  cgggcgg-----------g-------------a---------ccca-g--cg------------------
B D                  Marmoset  g---------------------------------------------------------------------
B D                  Bushbaby  a-gctaa-----------g-------------a---------gctt-g--cg------------------
B D                  Squirrel  t-gtcga-----------g-------------a---------acct-g--cg------------------
       Lesser Egyptian jerboa  a-gcgtc-----------c-------------c----tgagggact-g--cg------------------
                 Prairie vole  a-gtccc-----------c-------------cacccccaacatct-g--ca------------------
               Golden hamster  a-gccac-----------c-------------ccacccca--atct-g--cg------------------
B D                     Mouse  t-gcccc-----------t-------------c---------atct-g--cg------------------
B D                       Rat  a-gcccc-----------t-------------c---------atct-g--cg------------------
B D            Naked mole-rat  --------------------------------------------------ag------------------
B D                Guinea pig  a-gccta-----------g-------------a---------accc-g--cg------------------
                   Chinchilla  --------------------------------------------------ag------------------
             Brush-tailed rat  a-gccag-----------a-------------a---------acct-g--ag------------------
B D                    Rabbit  g-gcctg-----------g-------------a---------accc-g--cg------------------
B D                      Pika  a-gccaa-----------t-------------a---------ggcc-g--ca------------------
B D                       Pig  a-gtcaa-----------a-------------g---------ggct-g--ca------------------
B D                   Dolphin  a-ggcaa-----------a-------------g---------ggct-g--cg------------------
                 Killer whale  a-ggcaa-----------a-------------g---------ggct-g--cg------------------
B D                       Cow  a-gccaa-----------a-------------g---------ggct-g--ag------------------
B D                     Sheep  a-gccaa-----------a-------------g---------ggct-g--cg------------------
B D                     Horse  a-gccca-----------g-------------a---------gcct-g--cg------------------
B D          White rhinoceros  a-gccaa-----------g-------------a---------gcct-g--cg------------------
B D                       Dog  a-gctg----------------------------------------------------------------
               Pacific walrus  a-gccaa-----------g-------------c---------gtct-g--cg------------------
B D                   Megabat  g-gtcaa-----------t-------------g---------gcct-g--c-------------------
                Big brown bat  a-gccga-----------g-------------g---------gtct-g--ct------------------
B D                  Microbat  a-gcgga-----------g-------------g---------atcg-g--c-------------------
B D                  Hedgehog  a-gccg----------------------------------------------------------------
B D                  Elephant  -----------------------------------------------g--cg------------------
          Cape elephant shrew  g-gtg-------------a-------------g---------ccct-g--cg------------------
             Cape golden mole  t-gag-------------a-------------g---------ccccag--ag------------------
B D                 Armadillo  g-ggacgccgccccgcctg-------------g---------ccct-g--cg------------------
B D                   Opossum  t-tgcgc-----------g-------------g---------cgtc-c--ct------------------
B D           Tasmanian devil  c-cgggctgaccg-----g-------------g---------cccc-cgact------------------
B D                  Platypus  c-gtcga-----------g-------------a---------agat-a--c-------------------
  D               Rock pigeon  ------------------g-------------a---------gccc-g--gc------------------
  D              Saker falcon  ------------------t-------------g---------tttc-a--gg------------------
  D          Peregrine falcon  ------------------t-------------g---------tttc-a--gg------------------
  D       Collared flycatcher  ------------------g-------------g---------tgag-g--ag------------------
B D       Medium ground finch  ------------------g-------------g---------gagg-g--ga------------------
B D               Zebra finch  --------------------------------------------gg-g--gg------------------
           Tibetan ground jay  --------------------------------g---------tctg-g--aa------------------
B D                Budgerigar  ------------------aagggg------ctc---------tcat-g--gg------------------
  D                    Parrot  ------------------g-------------c---------ccct-g--aa------------------
  D             Scarlet macaw  ------------------g-------------c---------tcct-g--aa------------------
  D              Mallard duck  ------------------g-------------g---------acag-a--gg------------------
B D                    Turkey  ------------------g-------------g---------gctc-c--gg------------------
B D        American alligator  ---------------------gggcgggaccca---------cctg-g--gg------------------
  D            Painted turtle  --------------------------------g---------tgcc-g--gg------------------
  D    Spiny softshell turtle  --------------------------------g---------tgcg-g--ggtcgtgtacttgaagagag
B D                 Tetraodon  -ggtggc-----------g-------------a---------acct-g--cg------------------
B D                      Fugu  -ggtcgc-----------g-------------a---------acct-g--cg------------------
B D                    Tenrec  ======================================================================
B D           Chinese hamster  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Manatee  ======================================================================
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ======================================================================
B D                     Panda  ======================================================================
            Black flying-fox  ======================================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ---cg--t--------gg------------cccggccgt-----gg---gcg------------------
                        Chimp  ---cg--t--------gg------------cccggccgt-----gg---gcg------------------
                      Gorilla  ---cg--t--------gg------------cccggccgt-----gg---gcg------------------
          Crab-eating macaque  ---cg--t--------gg------------cccggccgc-----gt---gcg------------------
                       Baboon  ---cg--t--------gg------------tccggccgt-----gt---gcg------------------
                 Green monkey  ---cg--t--------gg------------cccggccgt-----gt---gcg------------------
                     Marmoset  ----------------------------------------------------------------------
                     Bushbaby  ---gg--c--------gg------------ccaaacttt-----gc---gcg------------------
                     Squirrel  ---tg--t--------gg------------c-------------ggtgggcg------------------
       Lesser Egyptian jerboa  ---cg--t--------gg-------------------------------gcg------------------
                 Prairie vole  ---cg--t--------gg------------ccgagccgt-----gggccgca------------------
               Golden hamster  ------------------------------------cgt-----gggctgca------------------
                        Mouse  ---cg--t--------gg------------ccgagccca-----ggctggcg------------------
                          Rat  ---cg--t--------gg------------ccgagccct-----gggtggcg------------------
               Naked mole-rat  ---cg--t--------cg----------------------------------------------------
                   Guinea pig  ---cg--t--------gg----------------------------------------------------
                   Chinchilla  ---tg--c--------cg----------------------------------------------------
             Brush-tailed rat  ---cg--c--------ag----------------------------------------------------
                       Rabbit  ---cg--t--------gg------------cccaaccgc-----gg---gcg------------------
                         Pika  ---cg--t--------ga------------cccggtcgt-----gt---gag------------------
                          Pig  ---cg--t--------gg------------ccgggccgg-----gg---ccg------------------
                      Dolphin  ---cg--t--------gg------------ccgagccgt-----gg---gcg------------------
                 Killer whale  ---cg--t--------gg------------ccgagccgt-----gg---gcg------------------
                          Cow  ---cgctt--------gg------------ccgagccgt-----gg---gcg------------------
                        Sheep  ---cgctt--------gg------------ccgaaccgt-----gg---gcg------------------
                        Horse  ---cg--t--------gg------------ccgagccgt-----gg---gcg------------------
             White rhinoceros  ---tg--t--------gg------------ctgagccgt-----gg---gcg------------------
                          Dog  ----------------gg------------ccgggccgc-----gg---gcg------------------
               Pacific walrus  ---cg--t--------gg------------ccgagccgc-----gg---gcg------------------
                      Megabat  ---gg--cctgcgcgtgg------------ccgagccgc-----gg---gcg------------------
                Big brown bat  ---gg--c--------gg------------ccgagccgc-----ag---gcg------------------
                     Microbat  ---gg--c--------gg------------ctgagccgc------g---gcg------------------
                     Hedgehog  -------c--------gg----------------gacgt-----gg---gca------------------
                     Elephant  ---cg--t--------gg------------ccgcgtccc-----gg---gc-------------------
          Cape elephant shrew  ---cg--t--------gg------------cccggccct-----gg---gc-------------------
             Cape golden mole  ---ct--t--------gg------------cccggcccg-----a-------------------------
                    Armadillo  ---cg--t--------gg------------cggatccgt-----gg---gcg------------------
                      Opossum  ---tg--a--------gg------------gaaggtcactttaggt---tgc------------------
              Tasmanian devil  ---ac--a--------ag------------gagaatcac-----gc---aga------------------
                     Platypus  -------t--------cg------------ccgggctac-----gg---ctc------------------
                  Rock pigeon  ---ca--c--------ag------------gctcagccc-----tg---cct------------------
                 Saker falcon  ---gc--t--------gg------------gggtgccca-----ag---cag------------------
             Peregrine falcon  ---gc--t--------gg------------gggtgccca-----ag---cag------------------
          Collared flycatcher  ---cc--a--------gt------------ggctccact-----gc---ctg------------------
          Medium ground finch  ---cc--t--------gg------------aggtgtcct-----gg---agg-------------gtgat
                  Zebra finch  ---cg--c--------cg------------cggtgcccc-----gg---ctg------------------
           Tibetan ground jay  ---cc--c--------gc------------tgata-agg-----gg---ctg------------------
                   Budgerigar  ---ca--c--------ag------------cattgctgt-----gg---cct------------------
                       Parrot  ---cc--c--------ag------------gctcagccc-----tg---cct------------------
                Scarlet macaw  ---cc--c--------ag------------gctcagccc-----tg---gct------------------
                 Mallard duck  ---ga--c--------ag------------aggcgtgct-----ga---cag-----------------a
                       Turkey  ---cg--c--------tg------------ctgcgctgt-----g-------------------------
           American alligator  ---cg--c--------gg------------ggcgggcgg-----gg---gcgcggggcgggcggcaggtg
               Painted turtle  ---ct--c--------ag------------gtgagcgct-----gg---g--------------------
       Spiny softshell turtle  gctct--c--------agaacaccctgccaaggtgcact-----gg---gct------------------
                    Tetraodon  ---gg--a--------gg------------cggagatgt-----gg---gct------------------
                         Fugu  ---gg--a--------gg------------cggagatgt-----gg---gct------------------
                       Tenrec  ======================================================================
              Chinese hamster  ======================================================================
             Tibetan antelope  ======================================================================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Manatee  ======================================================================
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  ======================================================================
                        Panda  ======================================================================
             Black flying-fox  ======================================================================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ======================================================================
                     Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Medaka  ======================================================================
                   Coelacanth  ======================================================================
                      Wallaby  ======================================================================
                       Lizard  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Atlantic cod  ======================================================================
     Chinese softshell turtle  ======================================================================
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  ======================================================================
              Green seaturtle  ======================================================================
       White-throated sparrow  ======================================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ---cgggccgtgccgg
                        Chimp  ---cgggccgtgccgg
                      Gorilla  ---cgggccgtgccgg
          Crab-eating macaque  ---caggccatgccgg
                       Baboon  ---cgggccatgccgg
                 Green monkey  ---cgggccatgccag
                     Marmoset  -----ggccgtgccgg
                     Bushbaby  ---ctggaggtgcagg
                     Squirrel  ---cggaccgtgctgg
       Lesser Egyptian jerboa  ---ccgaccgtcctgg
                 Prairie vole  ---gcgaccgtgttgc
               Golden hamster  ---gcgaccgtgttgg
                        Mouse  ---gcgactgtgttcg
                          Rat  ---gcgactgtgtttg
               Naked mole-rat  ----------------
                   Guinea pig  ----------------
                   Chinchilla  ----------------
             Brush-tailed rat  ----------------
                       Rabbit  ---cggactgtgctgg
                         Pika  ---cggacagtgatgg
                          Pig  ---cggacagtgcggg
                      Dolphin  ---ctgaccgtgcggg
                 Killer whale  ---ctgaccgtgcggg
                          Cow  ---cgggccgggctgg
                        Sheep  ---cggaccgggcggg
                        Horse  ---ctgactgtgccgc
             White rhinoceros  ---ttgaccgtgccgc
                          Dog  ---ctgaccgggcggg
               Pacific walrus  ---ctgaccgtgcggg
                      Megabat  ---cggaccctgccag
                Big brown bat  ---cggacta-gcggg
                     Microbat  ---cgggcggtgcggg
                     Hedgehog  ---cggagcgcgccgg
                     Elephant  ----------------
          Cape elephant shrew  ----------------
             Cape golden mole  ----------------
                    Armadillo  ---cgggcc-------
                      Opossum  ---ttcccggggatgg
              Tasmanian devil  ---agcccagcgctgg
                     Platypus  ---ggggccccc----
                  Rock pigeon  ------gatgggctct
                 Saker falcon  cacccaggggtcctgc
             Peregrine falcon  cacccaggggtcctgc
          Collared flycatcher  --------gagccagc
          Medium ground finch  agcactgctgggcgat
                  Zebra finch  -----tgcggggcggc
           Tibetan ground jay  -----gggagggtggt
                   Budgerigar  -----cggtggcaggt
                       Parrot  -----gaagggactgt
                Scarlet macaw  -----gagggggctct
                 Mallard duck  cagacagacagacagc
                       Turkey  ---------gggctgc
           American alligator  cagaccaggcggtggc
               Painted turtle  ----------gtctct
       Spiny softshell turtle  --------tagcctca
                    Tetraodon  ---cggtccatcagag
                         Fugu  ---cgggccatcaggg
                       Tenrec  ================
              Chinese hamster  ================
             Tibetan antelope  ================
                        Shrew  NNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNN
                Domestic goat  ================
                       Alpaca  ================
              Star-nosed mole  NNNNNNNNNNNNNNNN
                      Manatee  ================
           Chinese tree shrew  NNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNN
               Bactrian camel  ================
                        Panda  ================
             Black flying-fox  ================
                      Ferret   NNNNNNNNNNNNNNNN
                 Weddell seal  NNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ================
                     Aardvark  NNNNNNNNNNNNNNNN
                       Medaka  ================
                   Coelacanth  ================
                      Wallaby  ================
                       Lizard  ================
           Southern platyfish  ================
                      Chicken  ================
                 Atlantic cod  ================
     Chinese softshell turtle  ================
              Squirrel monkey  NNNNNNNNNNNNNNNN
                       Rhesus  NNNNNNNNNNNNNNNN
                X. tropicalis  ================
              Green seaturtle  ================
       White-throated sparrow  ================
                       Gibbon  NNNNNNNNNNNNNNNN
                    Orangutan  NNNNNNNNNNNNNNNN

Inserts between block 21 and 22 in window
B D                  Opossum 16bp
B D          Tasmanian devil 30bp
  D              Rock pigeon 7bp
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
  D      Collared flycatcher 1bp
B D      Medium ground finch 1bp
B D              Zebra finch 3bp
          Tibetan ground jay 3bp
B D               Budgerigar 1bp
  D                   Parrot 1bp
  D            Scarlet macaw 1bp
  D             Mallard duck 8bp
B D                   Turkey 8bp
B D       American alligator 8bp
  D           Painted turtle 5bp
  D   Spiny softshell turtle 6bp

Alignment block 22 of 135 in window, 76384507 - 76384509, 3 bps 
B D                     Human  agg
B D                     Chimp  agg
B D                   Gorilla  agg
B D       Crab-eating macaque  agg
B D                    Baboon  agg
B D              Green monkey  agg
B D                  Marmoset  agg
B D                  Bushbaby  agg
B D                  Squirrel  ggg
       Lesser Egyptian jerboa  gga
                 Prairie vole  ggg
               Golden hamster  agg
B D                     Mouse  ggg
B D                       Rat  ggg
B D                    Rabbit  ggt
B D                      Pika  ggc
B D                       Pig  agg
B D                   Dolphin  ggg
                 Killer whale  ggt
B D                       Cow  gg-
B D                     Sheep  gg-
B D                     Horse  agg
B D          White rhinoceros  agg
B D                       Dog  agg
               Pacific walrus  agg
B D                   Megabat  aag
                Big brown bat  agg
B D                  Microbat  agg
B D                   Manatee  agg
B D                   Opossum  --g
B D           Tasmanian devil  --g
B D                  Platypus  -g-
B D                 Tetraodon  agg
B D                      Fugu  agg
B D                    Tenrec  ===
B D                  Hedgehog  ---
B D                Guinea pig  ---
B D           Chinese hamster  ===
B D                  Elephant  ---
            Tibetan antelope  ===
         Cape elephant shrew  ---
B D                     Shrew  NNN
        David's myotis (bat)  NNN
               Domestic goat  ===
B D                    Alpaca  ===
             Star-nosed mole  NNN
B D                 Armadillo  ---
                  Chinchilla  ---
            Brush-tailed rat  ---
          Chinese tree shrew  NNN
B D                       Cat  NNN
B D            Naked mole-rat  ---
              Bactrian camel  ===
B D                     Panda  ===
            Black flying-fox  ===
B D                   Ferret   NNN
            Cape golden mole  ---
                Weddell seal  NNN
      Yellowbelly pufferfish  ===
                    Aardvark  NNN
B D                    Medaka  ===
B D                Coelacanth  ===
B D                    Turkey  ===
  D              Mallard duck  ===
  D             Scarlet macaw  ===
  D                    Parrot  ===
B D                Budgerigar  ===
B D                   Wallaby  ===
  D    Spiny softshell turtle  ===
B D                    Lizard  ===
          Southern platyfish  ===
  D          Peregrine falcon  ===
  D               Rock pigeon  ===
  D            Painted turtle  ===
B D                   Chicken  ===
B D              Atlantic cod  ===
  D       Collared flycatcher  ===
  D  Chinese softshell turtle  ===
B D           Squirrel monkey  NNN
B D               Zebra finch  ===
  D              Saker falcon  ===
B D                    Rhesus  NNN
B D             X. tropicalis  ===
  D           Green seaturtle  ===
B D       Medium ground finch  ===
B D        American alligator  ===
  D    White-throated sparrow  ===
          Tibetan ground jay  ===
B D                    Gibbon  NNN
B D                 Orangutan  NNN

Inserts between block 22 and 23 in window
B D                  Opossum 2bp
B D          Tasmanian devil 2bp

Alignment block 23 of 135 in window, 76384510 - 76384539, 30 bps 
B D                     Human  ---cggcgcgctg--------------------aggcc--------------g-----------------
B D                     Chimp  ---cggcgcgctg--------------------aggcc--------------g-----------------
B D                   Gorilla  ---cggcgcgctg--------------------aggcc--------------g-----------------
B D       Crab-eating macaque  ---cggtgcgctg--------------------aggcc--------------g-----------------
B D                    Baboon  ---cggcgcgctg--------------------aggcc--------------g-----------------
B D              Green monkey  ---cggcgcgctg--------------------aggcc--------------g-----------------
B D                  Marmoset  ---cggtgctctg--------------------aggcc--------------a-----------------
B D                  Bushbaby  ---cggcgcagga--------------------cagcc--------------g-----------------
B D                  Squirrel  ---tggcgtggtg--------------------aggcc--------------a-----------------
       Lesser Egyptian jerboa  ---cggcgtggtg--------------------aggcc--------------g-----------------
                 Prairie vole  ---cggcactgtg-------------------atgatc--------------c-----------------
               Golden hamster  ---cggcactgtg--------------------tgatc--------------c-----------------
B D                     Mouse  ---aggtgcagtg--------------------agatc--------------c-----------------
B D                       Rat  ---cggtacagcg--------------------agatc--------------c-----------------
B D            Naked mole-rat  ----------agg--------------------actgt--------------g-----------------
B D                Guinea pig  ----------gcg--------------------agctg--------------c-----------------
                   Chinchilla  ----------ggg--------------------acgcc--------------c-----------------
             Brush-tailed rat  ----------gcg--------------------agccg--------------c-----------------
B D                    Rabbit  ---tgtgccggga--------------------gggcc--------------c-----------------
B D                      Pika  ---tgggccggga--------------------agg-c--------------c-----------------
B D                       Pig  ---aggcgcggcg--------------------aggcc--------------g-----------------
B D                   Dolphin  ---cggcgcggtg--------------------aggcc--------------g-----------------
                 Killer whale  ---cggcgcggtg--------------------aggcc--------------g-----------------
B D                       Cow  ---cggagcggca--------------------aggcc--------------a-----------------
B D                     Sheep  ---cggagcggcg--------------------aggcc--------------g-----------------
B D                     Horse  ---cggccgggtg--------------------agacc--------------t-----------------
B D          White rhinoceros  ---cggccgggtg--------------------agacc--------------c-----------------
B D                       Dog  ---cggcgccgtg--------------------aggct--------------g-----------------
B D                     Panda  ---cggcgcggtg--------------------atgcc--------------g-----------------
               Pacific walrus  ---cggcggggtg--------------------atgcc--------------a-----------------
B D                   Megabat  ---cggcgcctgg---------------------------------------------------------
                Big brown bat  ---cgaccccggg--------------------aggcg-----gggagac--g-----------------
B D                  Microbat  ---cagcgccggg--------------------aggcagcgccgggaggcggg-----------------
B D                  Hedgehog  ----ggcgcgg-----------------------ggcc--------------g-----------------
B D                  Elephant  ----------------------------------------------------------------------
          Cape elephant shrew  ----------------------------------------------------------------------
B D                   Manatee  ----------------------------------------------------------------------
             Cape golden mole  ----------------------------------------------------------------------
B D                 Armadillo  ----------------------------------------------------------------------
B D                   Opossum  ----------------------------------------------------------------------
B D           Tasmanian devil  ----------------------------------------------------------------------
B D                  Platypus  ---cgtcgctcga--------------------agggg--------------a-----------------
  D               Rock pigeon  ------------------------------------------------------------gcaccttg--
  D              Saker falcon  ------------------------------------------------------------gcac------
  D          Peregrine falcon  ------------------------------------------------------------gcac------
  D       Collared flycatcher  ----------------------------------------------------------------------
B D       Medium ground finch  ----------------------------------------------------------------------
B D               Zebra finch  ----------------------------------------------------------------------
           Tibetan ground jay  ----------------------------------------------------------------------
B D                Budgerigar  ----------------------------------------------------------------------
  D                    Parrot  ----------------------------------------------------------------------
  D             Scarlet macaw  ----------------------------------------------------------------------
  D              Mallard duck  --------------------------------------------------------gggggctcgctg--
B D                    Turkey  --------------------------------------------------------ggggcggtgcgg--
B D        American alligator  ----------------------------------------------------tccaggatccgcgctgtg
  D            Painted turtle  ----------------------------------------------------------------------
  D    Spiny softshell turtle  ----------------------------------------------------------------------
B D                 Tetraodon  cttcggcgctgcaggcgccccggagagacggtgagt----------------------------------
B D                      Fugu  cttcggcgctgcaggcgccccggagagacggtgagt----------------------------------
B D                    Tenrec  ======================================================================
B D           Chinese hamster  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Bactrian camel  ======================================================================
            Black flying-fox  ======================================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ------gag----------------------------------------gcgg------gc---------
                        Chimp  ------gag----------------------------------------gcgg------gc---------
                      Gorilla  ------gag----------------------------------------gcgg------gc---------
          Crab-eating macaque  ------ggg----------------------------------------gcgg------gc---------
                       Baboon  ------ggg----------------------------------------gcgg------gc---------
                 Green monkey  ------ggg----------------------------------------gcgg------gc---------
                     Marmoset  ------ggg----------------------------------------acgg------gc---------
                     Bushbaby  ------gcc----------------------------------------gca------------------
                     Squirrel  ---------------------------------------------------gg------gt---------
       Lesser Egyptian jerboa  ------ggc----------------------------------------gcgg------gt---------
                 Prairie vole  ------cgg----------------------------------------gcgg------gt---------
               Golden hamster  ------cgg----------------------------------------gcgg------gt---------
                        Mouse  ------cgg----------------------------------------gcgg------gt---------
                          Rat  ------cgg----------------------------------------gcgg------gt---------
               Naked mole-rat  ------cgg----------------------------------------aggg------ac---------
                   Guinea pig  ------ggg----------------------------------------cgcg------gg---------
                   Chinchilla  ------ggggaagct----------------------------------aggg------gt---------
             Brush-tailed rat  ------ggg----------------------------------------cgcg------ga---------
                       Rabbit  ------gag------------------------------------------cg------gg---------
                         Pika  ------gag------------------------------------------ta------gg---------
                          Pig  ------ggg----------------------------------------gcag------gc---------
                      Dolphin  ------ggg----------------------------------------acag------gc---------
                 Killer whale  ------ggg----------------------------------------acag------gc---------
                          Cow  ------ggg----------------------------------------cccc------gc---------
                        Sheep  ------ggg----------------------------------------cccg------gc---------
                        Horse  ------ggg----------------------------------------gcgggcgggcgc---------
             White rhinoceros  ------ggg----------------------------------------gcgg------gc---------
                          Dog  ------ggg----------------------------------------gcgg------gc---------
                        Panda  ------ggg----------------------------------------gcgg------gc---------
               Pacific walrus  ------ggg----------------------------------------gcgg------gg---------
                      Megabat  ----------------------------------------------------------------------
                Big brown bat  ------gga----------------------------------------gtgg------gc---------
                     Microbat  ------gga----------------------------------------gtgg------gc---------
                     Hedgehog  ------ggg----------------------------------------g--------------------
                     Elephant  -------------------------------------------------cctg------cc---------
          Cape elephant shrew  ---------------------------------ggtga-----------gcag------cc---------
                      Manatee  ----------cggcgtgggcctgggtcgggacaagcgg-----------gcgg------ccggggctgcg
             Cape golden mole  ----------------------aggcggagctgggcggg------cattgcag------tc---------
                    Armadillo  ---------------------cgcaggaaggcgggcggggtccgcgcctggag------cc---------
                      Opossum  -----------------------------------------------ctatgg------cc---------
              Tasmanian devil  -----------------------------------------------cccttg------cc---------
                     Platypus  ------aag----------------------------------------acgt------gt---------
                  Rock pigeon  ------gct----------------------------------------gtgg------tc-----tcgg
                 Saker falcon  ------gct----------------------------------------gccg------cc---------
             Peregrine falcon  ------gct----------------------------------------gccg------cc---------
          Collared flycatcher  --------t----------------------------------------ggag------cc---------
          Medium ground finch  ------cac----------------------------------------gggg------cc---------
                  Zebra finch  ------gac----------------------------------------ggag------cc---------
           Tibetan ground jay  ------ggg----------------------------------------ggag------tc---------
                   Budgerigar  -------------------------------------------------ctga------gc---------
                       Parrot  -------------------------------------------------atgg------gc---------
                Scarlet macaw  -------------------------------------------------atgg------gc---------
                 Mallard duck  ------gca----------------------------------------ggcg------ac---------
                       Turkey  ------agc----------------------------------------gctg------cc---------
           American alligator  acgcccttc----------------------------------------acgt------gc---------
               Painted turtle  ------ggc----------------------------------------tggt------gc---------
       Spiny softshell turtle  ------aga----------------------------------------ggaa------ac---------
                    Tetraodon  ----------------------------------------------------------------------
                         Fugu  ----------------------------------------------------------------------
                       Tenrec  ======================================================================
              Chinese hamster  ======================================================================
             Tibetan antelope  ======================================================================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  ======================================================================
             Black flying-fox  ======================================================================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ======================================================================
                     Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Medaka  ======================================================================
                   Coelacanth  ======================================================================
                      Wallaby  ======================================================================
                       Lizard  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Atlantic cod  ======================================================================
     Chinese softshell turtle  ======================================================================
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  ======================================================================
              Green seaturtle  ======================================================================
       White-throated sparrow  ======================================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  --a-----------------g---a----gg
                        Chimp  --a-----------------g---a----gg
                      Gorilla  --a-----------------g---ag---gg
          Crab-eating macaque  --g-----------------g---a----gt
                       Baboon  --g-----------------g---a----gt
                 Green monkey  --g-----------------g---a----gt
                     Marmoset  --g-----------------g--------gg
                     Bushbaby  -------------------------------
                     Squirrel  --c-----------------a---gg---gc
       Lesser Egyptian jerboa  --g-----------------gcacgg---ga
                 Prairie vole  --g-----------------g---gg---ga
               Golden hamster  --g-----------------g---gg---ga
                        Mouse  --g-----------------g---gg---ga
                          Rat  --g-----------------g---gg---ga
               Naked mole-rat  --c-----------------a---gg---gg
                   Guinea pig  --c-----------------a---gt---gc
                   Chinchilla  --g-----------------g---ga---ga
             Brush-tailed rat  --c-----------------a---ga---gc
                       Rabbit  --c-----------------g---gg---ga
                         Pika  --c-----------------g----------
                          Pig  --t-----------------g---g------
                      Dolphin  --g-----------------g---g------
                 Killer whale  --g-----------------g---g------
                          Cow  --t-----------------t---g------
                        Sheep  --t-----------------g---g------
                        Horse  --g-----------------g---g------
             White rhinoceros  --g-----------------g---g------
                          Dog  --a-----------------g---g------
                        Panda  --a-----------------g---g------
               Pacific walrus  --g-----------------g---g------
                      Megabat  -------------------------------
                Big brown bat  --g-----------------g---g------
                     Microbat  --g-----------------g---g------
                     Hedgehog  -------------------------------
                     Elephant  -------------------------------
          Cape elephant shrew  -------------------------------
                      Manatee  cg-----------------------------
             Cape golden mole  -------------------------------
                    Armadillo  -------------------------------
                      Opossum  --c-----------------c---ag---ga
              Tasmanian devil  --t-----------------g---gg---ga
                     Platypus  --a-----------------t---gggatgc
                  Rock pigeon  tga-----------------g---ag---gt
                 Saker falcon  --a-----------------g---ct---cc
             Peregrine falcon  --a-----------------g---ct---cc
          Collared flycatcher  --a-----------------g---tg---cc
          Medium ground finch  --a-----------------g----------
                  Zebra finch  --g-----------------g---cg---cc
           Tibetan ground jay  --a-----------------c---tg---gc
                   Budgerigar  --agtcggtgtgtggacaagg---ag---gt
                       Parrot  --a-----------------g---ag---ca
                Scarlet macaw  --a-----------------g---ag---ca
                 Mallard duck  --g-----------------g---ag---ac
                       Turkey  --g-----------------g---gg---ga
           American alligator  --a-----------------g---ca---gc
               Painted turtle  --t-----------------g---gg---ct
       Spiny softshell turtle  --t-----------------g---ag---gc
                    Tetraodon  -------------------------------
                         Fugu  -------------------------------
                       Tenrec  ===============================
              Chinese hamster  ===============================
             Tibetan antelope  ===============================
                        Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                Domestic goat  ===============================
                       Alpaca  ===============================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
           Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                          Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Bactrian camel  ===============================
             Black flying-fox  ===============================
                      Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
       Yellowbelly pufferfish  ===============================
                     Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Medaka  ===============================
                   Coelacanth  ===============================
                      Wallaby  ===============================
                       Lizard  ===============================
           Southern platyfish  ===============================
                      Chicken  ===============================
                 Atlantic cod  ===============================
     Chinese softshell turtle  ===============================
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                X. tropicalis  ===============================
              Green seaturtle  ===============================
       White-throated sparrow  ===============================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                    Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 23 and 24 in window
B D                     Fugu 4435bp

Alignment block 24 of 135 in window, 76384540 - 76384556, 17 bps 
B D                     Human  c-------c----------------ga-------------ggccgc------------------------
B D                     Chimp  c-------c----------------ga-------------ggccgc------------------------
B D                   Gorilla  c-------c----------------ga-------------ggccgc------------------------
B D       Crab-eating macaque  c-------c----------------ga-------------ggccgc------------------------
B D                    Baboon  c-------c----------------ga-------------ggccgc------------------------
B D              Green monkey  c-------c----------------ta-------------ggccgc------------------------
B D                  Marmoset  c-------c----------------ga-------------cgccgc------------------------
B D                  Squirrel  c-------c----------------gg-------------gtccac------------------------
       Lesser Egyptian jerboa  t-------c----------------cc-------------gagcgc------------------------
                 Prairie vole  c-------c----------------ag-------------ggcggc------------------------
               Golden hamster  c-------c----------------gg-------------ggcggt------------------------
B D                     Mouse  c-------c----------------ag-------------agctgc------------------------
B D                       Rat  c-------c----------------ag-------------ggctgc------------------------
B D            Naked mole-rat  t-------g----------------agggtgggagactgcggtcgc------------------------
B D                Guinea pig  t-------g----------------gg-------------gactccggggtgaggcgaggggtgggaccc
                   Chinchilla  c-------c----------------ta-------------ggtctc------------------------
             Brush-tailed rat  t-------g----------------ta-------------gaccgc------------------------
B D                    Rabbit  c-------c----------------gg-------------gaacgc------------------------
B D                      Pika  c-------c----------------gg-------------g-----------------------------
B D                       Pig  c-------c----------------cg-------------ggccga------------------------
B D                   Dolphin  c-------t----------------cc-------------agctat------------------------
                 Killer whale  c-------t----------------cc-------------agctat------------------------
B D                       Cow  c-------t----------------tg-------------cgccgt------------------------
B D                     Sheep  c-------t----------------tg-------------cgccgt------------------------
B D                     Horse  c-------c----------------cg-------------ggccac------------------------
B D          White rhinoceros  c-------c----------------ca-------------ggactc------------------------
B D                       Dog  c-------c----------------ca-------------ggccgc------------------------
B D                     Panda  c-------c----------------ca-------------ggccac------------------------
               Pacific walrus  cgggcaggc----------------ca-------------ggccac------------------------
B D                   Megabat  --------c-------------------------------------------------------------
                Big brown bat  c-------c----------------cc-------------agccg-------------------------
B D                  Microbat  --------c----------------cc-------------agccgc------------------------
B D                   Opossum  c-------a----------------ga-------------aactat------------------------
B D           Tasmanian devil  c-------c----------------tt-------------ggtga-------------------------
B D                  Platypus  c-------a----------------ga-------------gtcccc------------------------
  D               Rock pigeon  c-------ccaaggtgtggtgacaagg-------------aggtgt------------------------
  D              Saker falcon  t-------c----------------tg-------------ggtgcc------------------------
  D          Peregrine falcon  t-------c----------------tg-------------ggtgcc------------------------
  D       Collared flycatcher  t------------------------gg-------------agccag------------------------
B D       Medium ground finch  -------------------------ga-------------aataat------------------------
B D               Zebra finch  c-------tcagagc----------gg-------------aaaggg------------------------
           Tibetan ground jay  t-------c----------------tg-------------ggcagc------------------------
B D                Budgerigar  t-------t----------------cc-------------tgcagg------------------------
  D                    Parrot  t-------t----------------gt-------------tgtggc------------------------
  D             Scarlet macaw  t-------t----------------gt-------------tgcggc------------------------
  D              Mallard duck  c------------------------gg-------------agctgt------------------------
B D                    Turkey  c------------------------gc-------------agcggt------------------------
B D        American alligator  t-------c----------------gt-------------ccagcg------------------------
  D            Painted turtle  c-------a----------------gg-------------tgagcg------------------------
  D    Spiny softshell turtle  a-------c----------------gg-------------cgatag------------------------
B D                 Tetraodon  --------c----------------ag-------------aaaacc------------------------
B D                    Tenrec  ======================================================================
B D                  Hedgehog  ----------------------------------------------------------------------
B D           Chinese hamster  ======================================================================
B D                  Elephant  ----------------------------------------------------------------------
            Tibetan antelope  ======================================================================
         Cape elephant shrew  ----------------------------------------------------------------------
B D                     Shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Domestic goat  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Armadillo  ----------------------------------------------------------------------
B D                   Manatee  ----------------------------------------------------------------------
          Chinese tree shrew  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                  Bushbaby  ----------------------------------------------------------------------
              Bactrian camel  ======================================================================
            Black flying-fox  ======================================================================
B D                   Ferret   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Cape golden mole  ----------------------------------------------------------------------
                Weddell seal  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
                    Aardvark  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Orangutan  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ---gccgggc
                        Chimp  ---gccgggc
                      Gorilla  ---gccgggc
          Crab-eating macaque  ---gtcgggc
                       Baboon  ---gccgggc
                 Green monkey  ---gccgggc
                     Marmoset  ---gcggcgc
                     Squirrel  ---atcgacc
       Lesser Egyptian jerboa  ---gtggaac
                 Prairie vole  ---gcgctgc
               Golden hamster  ---gcgcagc
                        Mouse  ---gcgcaac
                          Rat  ---gctcaac
               Naked mole-rat  ---gccgagc
                   Guinea pig  gcggtagcgc
                   Chinchilla  ---gccgagc
             Brush-tailed rat  ---gcgacac
                       Rabbit  ---gcggggc
                         Pika  ----------
                          Pig  ---gcttggc
                      Dolphin  ---gcagggc
                 Killer whale  ---gcagggc
                          Cow  ---gcggggc
                        Sheep  ---gccgggc
                        Horse  ---gcggggt
             White rhinoceros  ---gcggggt
                          Dog  ---gccaggc
                        Panda  ---accaggc
               Pacific walrus  ---gccagga
                      Megabat  ----------
                Big brown bat  ----------
                     Microbat  ----------
                      Opossum  ---gcttcgg
              Tasmanian devil  ---gctgcag
                     Platypus  ---atcccac
                  Rock pigeon  ---cctgc--
                 Saker falcon  ---atcgc--
             Peregrine falcon  ---atcgc--
          Collared flycatcher  ---cctggag
          Medium ground finch  ---cctggtg
                  Zebra finch  ---cctgagg
           Tibetan ground jay  ---agtgggg
                   Budgerigar  ---gtcattc
                       Parrot  ---ctcggtg
                Scarlet macaw  ---ctcggt-
                 Mallard duck  ---cccggag
                       Turkey  ---gc--gag
           American alligator  ---accgg--
               Painted turtle  ---ctggggt
       Spiny softshell turtle  ---gagaggc
                    Tetraodon  ---cctgg--
                       Tenrec  ==========
                     Hedgehog  ----------
              Chinese hamster  ==========
                     Elephant  ----------
             Tibetan antelope  ==========
          Cape elephant shrew  ----------
                        Shrew  NNNNNNNNNN
         David's myotis (bat)  NNNNNNNNNN
                Domestic goat  ==========
                       Alpaca  ==========
              Star-nosed mole  NNNNNNNNNN
                    Armadillo  ----------
                      Manatee  ----------
           Chinese tree shrew  NNNNNNNNNN
                          Cat  NNNNNNNNNN
                     Bushbaby  ----------
               Bactrian camel  ==========
             Black flying-fox  ==========
                      Ferret   NNNNNNNNNN
             Cape golden mole  ----------
                 Weddell seal  NNNNNNNNNN
       Yellowbelly pufferfish  ==========
                         Fugu  ==========
                     Aardvark  NNNNNNNNNN
                       Medaka  ==========
                   Coelacanth  ==========
                      Wallaby  ==========
                       Lizard  ==========
           Southern platyfish  ==========
                      Chicken  ==========
                 Atlantic cod  ==========
     Chinese softshell turtle  ==========
              Squirrel monkey  NNNNNNNNNN
                       Rhesus  NNNNNNNNNN
                X. tropicalis  ==========
              Green seaturtle  ==========
       White-throated sparrow  ==========
                       Gibbon  NNNNNNNNNN
                    Orangutan  NNNNNNNNNN

Inserts between block 24 and 25 in window
  D              Rock pigeon 31bp
  D             Saker falcon 13bp
  D         Peregrine falcon 13bp
  D      Collared flycatcher 46bp
B D      Medium ground finch 40bp
          Tibetan ground jay 64bp
B D               Budgerigar 10bp
  D                   Parrot 10bp
  D            Scarlet macaw 10bp
  D             Mallard duck 15bp
B D                   Turkey 14bp
  D           Painted turtle 12bp
  D   Spiny softshell turtle 19bp

Alignment block 25 of 135 in window, 76384557 - 76384559, 3 bps 
B D                     Human  t--ca
B D                     Chimp  t--ca
B D                   Gorilla  t--ca
B D       Crab-eating macaque  t--ca
B D                    Baboon  t--ca
B D              Green monkey  t--ca
B D                  Marmoset  t--ca
B D                  Squirrel  c--cc
       Lesser Egyptian jerboa  g--ca
                 Prairie vole  g--ct
               Golden hamster  g--ct
B D                     Mouse  t--ct
B D                       Rat  c--tt
B D            Naked mole-rat  g--aa
B D                Guinea pig  g--ca
                   Chinchilla  g--ca
             Brush-tailed rat  g--ca
B D                    Rabbit  g--ca
B D                       Pig  g--cg
B D                   Dolphin  g--cg
                 Killer whale  g--cg
B D                       Cow  c--tg
B D                     Sheep  g--cg
B D                     Horse  g--cc
B D          White rhinoceros  g--tc
B D                       Dog  g--cc
B D                     Panda  g--cc
               Pacific walrus  g--cc
B D                   Megabat  g--ct
                Big brown bat  g--cc
B D                  Microbat  g--cc
B D                   Opossum  g--ta
B D           Tasmanian devil  ggcca
B D                  Platypus  a--ca
  D            Painted turtle  ---tg
B D                 Tetraodon  --tta
B D                    Tenrec  =====
B D                  Hedgehog  -----
B D           Chinese hamster  =====
B D                  Elephant  -----
            Tibetan antelope  =====
         Cape elephant shrew  -----
B D                     Shrew  NNNNN
        David's myotis (bat)  NNNNN
               Domestic goat  =====
B D                    Alpaca  =====
             Star-nosed mole  NNNNN
B D                      Pika  -----
B D                 Armadillo  -----
B D                   Manatee  -----
          Chinese tree shrew  NNNNN
B D                       Cat  NNNNN
B D                  Bushbaby  -----
              Bactrian camel  =====
            Black flying-fox  =====
B D                   Ferret   NNNNN
            Cape golden mole  -----
                Weddell seal  NNNNN
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
                    Aardvark  NNNNN
B D                    Medaka  =====
B D                Coelacanth  =====
B D                    Turkey  =====
  D              Mallard duck  =====
  D             Scarlet macaw  =====
  D                    Parrot  =====
B D                Budgerigar  =====
B D                   Wallaby  =====
  D    Spiny softshell turtle  =====
B D                    Lizard  =====
          Southern platyfish  =====
  D          Peregrine falcon  =====
  D               Rock pigeon  =====
B D                   Chicken  =====
B D              Atlantic cod  =====
  D       Collared flycatcher  =====
  D  Chinese softshell turtle  =====
B D           Squirrel monkey  NNNNN
B D               Zebra finch  =====
  D              Saker falcon  =====
B D                    Rhesus  NNNNN
B D             X. tropicalis  =====
  D           Green seaturtle  =====
B D       Medium ground finch  =====
B D        American alligator  -----
  D    White-throated sparrow  =====
          Tibetan ground jay  =====
B D                    Gibbon  NNNNN
B D                 Orangutan  NNNNN

Inserts between block 25 and 26 in window
B D                  Opossum 18bp
B D          Tasmanian devil 11bp
  D           Painted turtle 10bp

Alignment block 26 of 135 in window, 76384560 - 76384569, 10 bps 
B D                     Human  g----gttccacc--c
B D                     Chimp  g----gttccacc--c
B D                   Gorilla  g----gttccacc--c
B D       Crab-eating macaque  g----gttccacc--c
B D                    Baboon  g----gttccacc--c
B D              Green monkey  g----gttccacc--c
B D                  Marmoset  g----gttccacc--c
B D           Squirrel monkey  g----gttccacc--c
B D                  Bushbaby  g----gttccacc--c
B D                  Squirrel  a----gttccacc--t
       Lesser Egyptian jerboa  c----gttccagc--c
                 Prairie vole  g----gttccaca--c
               Golden hamster  g----gttccaac--c
B D                     Mouse  g----gttccacc--c
B D                       Rat  g----gttccacc--c
B D            Naked mole-rat  g----cgcccttc--c
B D                Guinea pig  gcacagtcccttc--c
                   Chinchilla  g----gtcccttc--c
             Brush-tailed rat  g----gtcccttc--t
B D                    Rabbit  g----gttccacc--c
B D                      Pika  ---------ctcc--c
B D                       Pig  g----gttccacc--c
B D                   Dolphin  g----ggtcctcc--c
                 Killer whale  g----ggtcctcc--c
B D                       Cow  g----gttccacc--c
B D                     Sheep  g----gttccacc--c
B D                     Horse  t----gttccacc--c
B D          White rhinoceros  t----gttccacc--t
B D                       Dog  g----gttccacc--c
B D                     Panda  g----gttccacc--c
               Pacific walrus  g----gttccacc--c
B D                   Megabat  g----gttccacc--c
                Big brown bat  g----ggtccgcc--c
B D                  Microbat  g----ggtcctcc--c
B D                  Elephant  g----ggtccacc--c
          Cape elephant shrew  a----ggtccacc--c
B D                   Manatee  g----ggtccacc--t
             Cape golden mole  a----ggtccgcc--c
B D                 Armadillo  g----gctcccccaac
B D                   Opossum  ------cgccctc--c
B D           Tasmanian devil  ------ggccacc--c
B D                  Platypus  -----cctcctac--c
B D                 Tetraodon  ----cacggcacc--c
B D                    Tenrec  ================
B D                  Hedgehog  ----------------
B D           Chinese hamster  ================
            Tibetan antelope  ================
B D                     Shrew  NNNNNNNNNNNNNNNN
        David's myotis (bat)  NNNNNNNNNNNNNNNN
               Domestic goat  ================
B D                    Alpaca  ================
             Star-nosed mole  NNNNNNNNNNNNNNNN
          Chinese tree shrew  NNNNNNNNNNNNNNNN
B D                       Cat  NNNNNNNNNNNNNNNN
              Bactrian camel  ================
            Black flying-fox  ================
B D                   Ferret   NNNNNNNNNNNNNNNN
                Weddell seal  NNNNNNNNNNNNNNNN
      Yellowbelly pufferfish  ================
B D                      Fugu  ================
                    Aardvark  NNNNNNNNNNNNNNNN
B D                    Medaka  ================
B D                Coelacanth  ================
B D                    Turkey  ================
  D              Mallard duck  ================
  D             Scarlet macaw  ================
  D                    Parrot  ================
B D                Budgerigar  ================
B D                   W