Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 93 in window, 76050051 - 76050054, 4 bps 
B D                     Human  gggt-
B D                     Chimp  gggc-
B D                   Gorilla  gggc-
B D                 Orangutan  gggc-
B D                    Gibbon  gggc-
B D                    Rhesus  gggc-
B D       Crab-eating macaque  gggc-
B D                    Baboon  gggc-
B D              Green monkey  gggc-
B D                  Marmoset  gggc-
B D           Squirrel monkey  gggc-
           Chinese tree shrew  gggc-
B D                  Squirrel  gggc-
       Lesser Egyptian jerboa  gggt-
B D            Naked mole-rat  ggat-
B D                Guinea pig  gggg-
                   Chinchilla  gcgc-
             Brush-tailed rat  gggg-
B D                       Pig  gggc-
B D                    Alpaca  gg-t-
               Bactrian camel  gg-t-
B D                   Dolphin  gggt-
                 Killer whale  gggt-
             Tibetan antelope  ggcc-
B D                       Cow  gggt-
B D                     Sheep  ggct-
                Domestic goat  ggct-
B D                     Horse  gggt-
B D          White rhinoceros  gggt-
B D                       Cat  gggt-
B D                       Dog  gggt-
B D                   Ferret   aggt-
B D                     Panda  gggt-
               Pacific walrus  ggat-
                 Weddell seal  ggat-
             Black flying-fox  gag--
B D                   Megabat  gag--
                Big brown bat  gggt-
B D                  Microbat  gggt-
B D                  Hedgehog  agag-
              Star-nosed mole  gggc-
B D                 Armadillo  -ggtt
B D                    Tenrec  =====
B D                       Rat  =====
B D                     Mouse  =====
              Golden hamster  =====
B D           Chinese hamster  =====
                Prairie vole  =====
B D                  Elephant  -----
         Cape elephant shrew  =====
B D                     Shrew  =====
        David's myotis (bat)  -----
B D                      Pika  =====
B D                    Rabbit  =====
B D                   Manatee  -----
B D                  Bushbaby  =====
            Cape golden mole  -----
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
                    Aardvark  =====
B D               Stickleback  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D                    Medaka  =====
B D                Coelacanth  =====
B D                    Turkey  =====
                 Spotted gar  =====
  D              Mallard duck  =====
  D             Scarlet macaw  =====
  D                    Parrot  =====
B D                Budgerigar  =====
B D                   Wallaby  =====
  D    Spiny softshell turtle  =====
B D                    Lizard  =====
          Southern platyfish  =====
    Mexican tetra (cavefish)  =====
  D          Peregrine falcon  =====
B D                 Zebrafish  =====
  D               Rock pigeon  =====
B D              Nile tilapia  =====
  D            Painted turtle  =====
B D                 Tetraodon  =====
B D                   Chicken  =====
B D              Atlantic cod  =====
B D                  Platypus  -----
  D       Collared flycatcher  =====
  D  Chinese softshell turtle  =====
B D               Zebra finch  =====
  D              Saker falcon  =====
B D             X. tropicalis  =====
  D           Green seaturtle  =====
B D       Medium ground finch  =====
B D                   Opossum  =====
B D        American alligator  =====
  D    White-throated sparrow  =====
          Tibetan ground jay  =====
B D           Tasmanian devil  =====

Inserts between block 1 and 2 in window
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 2bp
B D                      Cow 2bp
B D                    Sheep 2bp
               Domestic goat 2bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 2bp
B D                  Ferret  1bp
B D                    Panda 2bp
              Pacific walrus 2bp
                Weddell seal 2bp
               Big brown bat 2bp
B D                 Microbat 2bp
B D                 Hedgehog 2bp
             Star-nosed mole 2bp

Alignment block 2 of 93 in window, 76050055 - 76050077, 23 bps 
B D                     Human  t-tggtgacagggac-aaa-----agagac
B D                     Chimp  t-tggtgacagggac-aaa-----agaga-
B D                   Gorilla  t-tggtgacagggac-aaa-----agagac
B D                 Orangutan  t-cggtgacagggac-aaa-----agagac
B D                    Gibbon  t-cggtgacagggac-aaa-----agagac
B D                    Rhesus  t-gggtgacagggac-aaa-----agagac
B D       Crab-eating macaque  t-gggtgacagggac-aaa-----agagac
B D                    Baboon  t-gggtgacagggac-aaa-----agagac
B D              Green monkey  t-gggtgacagggac-aaa-----agagac
B D                  Marmoset  t-tggtgacagggac-aaa-----agagac
B D           Squirrel monkey  t-tggtgacagggac-aaa-----agagac
           Chinese tree shrew  c-t-gtgacagggaa-gag-----agagag
B D                  Squirrel  t-tggtgacaagga----------------
       Lesser Egyptian jerboa  g-tggtaccagggaa-gaaagata------
B D           Chinese hamster  g-tggtgacacggag-ata-----------
               Golden hamster  g-tggtgacacagag-agg-----------
B D            Naked mole-rat  t-ttgtgacagggag-aaa-----------
B D                Guinea pig  t-ttgtgacagga---aca-----------
                   Chinchilla  t-ttgggactgggag-aaa-----------
             Brush-tailed rat  t-ttgtgacaggaagaaaa-----------
B D                      Pika  g-tagttacaggg-----------------
B D                       Pig  g-tggtaacagcgg---ag-----agagac
B D                    Alpaca  t-tggtgacaggga---ag-----aaaga-
               Bactrian camel  t-tggtgacaggga---ag-----aaaga-
B D                   Dolphin  t-tggtgacagggaa-taa-----agagac
                 Killer whale  t-tggtgacagggaa-taa-----agagac
             Tibetan antelope  c-tggcaagaggga---ag-----agggac
B D                       Cow  t-tggcaacaggga---ag-----aaagac
B D                     Sheep  t-tggcaacaggga---ag-----aaggac
                Domestic goat  c-tggcaacaggga---ag-----aaggac
B D                     Horse  t-tggtgatagagaa-taa-----agagac
B D          White rhinoceros  t-tggtgac--agaa-taa-----agagaa
B D                       Cat  c-tggtgatatg------a-----agagat
B D                       Dog  c-tagtgacagggaa-gag-----agacac
B D                   Ferret   c-tggtgacagggaa-gaa-----agagac
B D                     Panda  c-tgatggtagggaa-gaa-----ggaaac
               Pacific walrus  c-tggtgatagggaa-aaa-----agagac
                 Weddell seal  c-tggtgataggaaa-gaa-----agagac
             Black flying-fox  --tggtgaa-ggaaa-gaa-----agaggc
B D                   Megabat  --tggtgaa-ggaaa-gaa-----agaggc
                Big brown bat  t-tggtgacagggaa-gca-----ggaggc
B D                  Microbat  t-tggagac-gggaa-gga-----agaggc
B D                  Hedgehog  tttggtgaaaggaa---ag-----gaagac
              Star-nosed mole  t---gcgcaag-------------------
B D                 Armadillo  t-tggtaaaaggggagaaa-----agagac
B D                    Tenrec  ==============================
B D                       Rat  ==============================
B D                     Mouse  ==============================
                Prairie vole  ==============================
B D                  Elephant  ------------------------------
         Cape elephant shrew  ==============================
B D                     Shrew  ==============================
        David's myotis (bat)  ------------------------------
B D                    Rabbit  ==============================
B D                   Manatee  ------------------------------
B D                  Bushbaby  ==============================
            Cape golden mole  ------------------------------
      Yellowbelly pufferfish  ==============================
B D                      Fugu  ==============================
                    Aardvark  ==============================
B D               Stickleback  ==============================
         Pundamilia nyererei  ==============================
                 Zebra mbuna  ==============================
       Burton's mouthbreeder  ==============================
         Princess of Burundi  ==============================
B D                    Medaka  ==============================
B D                Coelacanth  ==============================
B D                    Turkey  ==============================
                 Spotted gar  ==============================
  D              Mallard duck  ==============================
  D             Scarlet macaw  ==============================
  D                    Parrot  ==============================
B D                Budgerigar  ==============================
B D                   Wallaby  ==============================
  D    Spiny softshell turtle  ==============================
B D                    Lizard  ==============================
          Southern platyfish  ==============================
    Mexican tetra (cavefish)  ==============================
  D          Peregrine falcon  ==============================
B D                 Zebrafish  ==============================
  D               Rock pigeon  ==============================
B D              Nile tilapia  ==============================
  D            Painted turtle  ==============================
B D                 Tetraodon  ==============================
B D                   Chicken  ==============================
B D              Atlantic cod  ==============================
B D                  Platypus  ------------------------------
  D       Collared flycatcher  ==============================
  D  Chinese softshell turtle  ==============================
B D               Zebra finch  ==============================
  D              Saker falcon  ==============================
B D             X. tropicalis  ==============================
  D           Green seaturtle  ==============================
B D       Medium ground finch  ==============================
B D                   Opossum  ==============================
B D        American alligator  ==============================
  D    White-throated sparrow  ==============================
          Tibetan ground jay  ==============================
B D           Tasmanian devil  ==============================

Inserts between block 2 and 3 in window
B D                      Pig 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 2bp
B D                      Cow 2bp
B D                    Sheep 2bp
               Domestic goat 2bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 2bp
B D                  Ferret  2bp
B D                    Panda 2bp
              Pacific walrus 2bp
                Weddell seal 2bp
            Black flying-fox 2bp
B D                  Megabat 2bp
               Big brown bat 1bp
B D                 Microbat 1bp
B D                 Hedgehog 2bp

Alignment block 3 of 93 in window, 76050078 - 76050084, 7 bps 
B D                     Human  --a---aataga
B D                     Chimp  ------aataga
B D                   Gorilla  --a---aataga
B D                 Orangutan  --a---aataga
B D                    Gibbon  --a---aataga
B D                    Rhesus  --a---aataca
B D       Crab-eating macaque  --a---aataca
B D                    Baboon  --a---aataca
B D              Green monkey  --a---aataca
B D                  Marmoset  --a---aacaga
B D           Squirrel monkey  --a---aacaga
           Chinese tree shrew  --agacgatggt
       Lesser Egyptian jerboa  --a---aatggc
                 Prairie vole  --a---aatggt
B D           Chinese hamster  --a---aatggt
               Golden hamster  --a---aatggt
B D            Naked mole-rat  --a---aacagt
B D                Guinea pig  --a---aacagt
                   Chinchilla  --g---aatggc
             Brush-tailed rat  --a---aatggt
B D                      Pika  --a---gacagt
B D                       Pig  --a---aacggt
B D                    Alpaca  ----------gt
               Bactrian camel  ----------gt
B D                   Dolphin  --a---aatggt
                 Killer whale  --a---aatggt
             Tibetan antelope  --g---aacggc
B D                       Cow  --a---aatggt
B D                     Sheep  --a---aacggt
                Domestic goat  --a---aacggt
B D                     Horse  --a---aatggc
B D          White rhinoceros  --a---aatggt
B D                       Cat  --a---aatggt
B D                       Dog  --a---gacagt
B D                   Ferret   --a---gacagt
B D                     Panda  --a---gacagt
               Pacific walrus  --a---gacagt
                 Weddell seal  --a---gacagt
             Black flying-fox  --a---aatggt
B D                   Megabat  --a---aatggt
                Big brown bat  --c---aat-gc
B D                  Microbat  --c---catggt
B D                  Hedgehog  --a---aatggt
              Star-nosed mole  ---------ggc
B D                 Armadillo  aaa---aatggt
B D                    Tenrec  ============
B D                       Rat  ============
B D                     Mouse  ============
B D                  Elephant  ------------
         Cape elephant shrew  ============
B D                     Shrew  ============
        David's myotis (bat)  ------------
B D                  Squirrel  ------------
B D                    Rabbit  ============
B D                   Manatee  ------------
B D                  Bushbaby  ============
            Cape golden mole  ------------
      Yellowbelly pufferfish  ============
B D                      Fugu  ============
                    Aardvark  ============
B D               Stickleback  ============
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
         Princess of Burundi  ============
B D                    Medaka  ============
B D                Coelacanth  ============
B D                    Turkey  ============
                 Spotted gar  ============
  D              Mallard duck  ============
  D             Scarlet macaw  ============
  D                    Parrot  ============
B D                Budgerigar  ============
B D                   Wallaby  ============
  D    Spiny softshell turtle  ============
B D                    Lizard  ============
          Southern platyfish  ============
    Mexican tetra (cavefish)  ============
  D          Peregrine falcon  ============
B D                 Zebrafish  ============
  D               Rock pigeon  ============
B D              Nile tilapia  ============
  D            Painted turtle  ============
B D                 Tetraodon  ============
B D                   Chicken  ============
B D              Atlantic cod  ============
B D                  Platypus  ------------
  D       Collared flycatcher  ============
  D  Chinese softshell turtle  ============
B D               Zebra finch  ============
  D              Saker falcon  ============
B D             X. tropicalis  ============
  D           Green seaturtle  ============
B D       Medium ground finch  ============
B D                   Opossum  ============
B D        American alligator  ============
  D    White-throated sparrow  ============
          Tibetan ground jay  ============
B D           Tasmanian devil  ============

Alignment block 4 of 93 in window, 76050085 - 76050128, 44 bps 
B D                     Human  tctgaggttttcag-cctagatgcctgaatc-aac-cacagggat----ag-
B D                     Chimp  tctgaggttttcag-cctagatgcctgaatc-aat-cacagggat----ag-
B D                   Gorilla  tctgaggttttcag-cctaagtgcctgaatg-aat-cacagggat----ag-
B D                 Orangutan  tgtgaggttttcag-cctagctgcctgaatg-aat-cacagggat----ag-
B D                    Gibbon  tctgaggttttcag-cctagatgcctgaatg-aat-cacagggat----ag-
B D                    Rhesus  tctaaggttttcag-cctagatgcctgaatg-aat-cacagggac----ag-
B D       Crab-eating macaque  tctaaggttttcag-cctagatgcctgaatg-aat-cacagggac----ag-
B D                    Baboon  tctaaggttttcag-cctagatgcctgaatg-aat-cacagggac----ag-
B D              Green monkey  tctaaggttttcag-cctagatgcctgaatg-aat-cacagggac----ag-
B D                  Marmoset  tctgaggttttcag-cctagatgcctgaagg-gat-cacagggatagacag-
B D           Squirrel monkey  tctgagattttcag-tctagatgcctgaagg-aat-cacagggat----ag-
           Chinese tree shrew  tctgctgtgtgcag-cct-gaggctggaacg-ggc-tggggtgac----a--
B D                  Squirrel  ------ggtttcta-cctagaaagctgaatg-cat-c------------a--
       Lesser Egyptian jerboa  tggaaggtttccag-tctagactcctgactg-gat-c------------a--
                 Prairie vole  tcttaggttttcag-tccagatgcctgaacg-aat-c------------a--
B D           Chinese hamster  tcttaggttttcaa-tccagaagcctgaaag-gaa-c------------a--
               Golden hamster  tcgtaggttttcag-tctagaggcctgaaag-gat-c------------a--
B D                       Rat  tcttaggttttcag-tctagaggcctggaag-gat-ctcggtaat----a--
B D            Naked mole-rat  tctgaagctttcag-cctagtt------gtg-gat-cacagtgata---a--
B D                Guinea pig  tctactgcggtcag-cctgggtgtgtgtgtg-gac-cccagtgatg---a--
                   Chinchilla  tctaagccttttag-cctgggtacccgtgtg-gat-cccagtgacg---a--
             Brush-tailed rat  tctgaagctttctg-cctaggtgcctgcgtg-gat-cccagggatg---a--
B D                      Pika  ----------------tctgaggtctgaatg-aat-catggtgata---a--
B D                       Pig  tcggagctgctccg-cctggacgcccggatg-aat-cacagtgat----g--
B D                    Alpaca  tctgaggttttcag-cctagatgcctgaata-aat-cacactgat----a--
               Bactrian camel  tctgaggttttcag-cctagatgcctgaata-aat-cacagtgat----a--
B D                   Dolphin  tctgaggttttcag-cctagatggctgaatg-aat-cacagtgat----a--
                 Killer whale  tctgaggttttcag-cctagatggctgaatg-aat-cacagtgat----a--
             Tibetan antelope  tctgaggctttcag-cctaggtgcccgaatg-gat-cacagtgac----a--
B D                       Cow  tctgaggttttcag-cctagatgcctgaatg-aat-cacagtgat----a--
B D                     Sheep  tctgaggtttccag-cctagatgcctgaatg-aat-cacagcgat----a--
                Domestic goat  tctgaggtttccag-cctagatgcctgaatg-aat-cacagcgat----a--
B D                     Horse  tctgaggttttcag-cctagaggcctgaatg-aat---cagtgac----g--
B D          White rhinoceros  tctgaggttttcag-cctagatgcctgaatg-aat-cacagtgat----a--
B D                       Cat  tccaaggttttcag-cccagatgcccgaaat-aat-cacagtgat----a--
B D                       Dog  cctgaggttttcag-cctggatgaccaaatg-aat-tatactgac----a--
B D                   Ferret   cctgaggttttcag-cctagatgcct-aatg-gat-cacagtgac----a--
B D                     Panda  cccgaggttttcag-cctaggtgcccgaatg-aat-catagggac----a--
               Pacific walrus  cccaaggttttcag-cctagatgcccgaatg-aat-cacagtgac----a--
                 Weddell seal  cccaaggttttcag-cctagatgcccaaatgaaat-catagtgac----a--
             Black flying-fox  tctgaggctttcaagcccaaatgcctaagtg-aat-cacggtgat----t--
B D                   Megabat  tctgaggctttcaagcccaaatgcctaagtg-aat-cacggtgat----t--
                Big brown bat  ggtgaggttc-----cccagatgcc-gagtg-gcc-cgcagtg-c----t--
B D                  Microbat  tgtgaggttt-----cccagacgct-gaatg-aac-cgcagtgat----t--
B D                  Hedgehog  tctcaggctttcca-ctttg-tgcttgaata-aat-catagtggc----a--
              Star-nosed mole  tctgaggctctgcg-cccagacgcctgcgtg-atc-tggagcagt-------
B D                 Armadillo  tctgaggtttttgg-tctagatgcctgaatg-aatgcacagtgat----a-a
B D                    Tenrec  ====================================================
B D                     Mouse  ====================================================
B D                  Elephant  ----------------------------------------------------
         Cape elephant shrew  ====================================================
B D                     Shrew  ====================================================
        David's myotis (bat)  ----------------------------------------------------
B D                    Rabbit  ====================================================
B D                   Manatee  ----------------------------------------------------
B D                  Bushbaby  ====================================================
            Cape golden mole  ----------------------------------------------------
      Yellowbelly pufferfish  ====================================================
B D                      Fugu  ====================================================
                    Aardvark  ====================================================
B D               Stickleback  ====================================================
         Pundamilia nyererei  ====================================================
                 Zebra mbuna  ====================================================
       Burton's mouthbreeder  ====================================================
         Princess of Burundi  ====================================================
B D                    Medaka  ====================================================
B D                Coelacanth  ====================================================
B D                    Turkey  ====================================================
                 Spotted gar  ====================================================
  D              Mallard duck  ====================================================
  D             Scarlet macaw  ====================================================
  D                    Parrot  ====================================================
B D                Budgerigar  ====================================================
B D                   Wallaby  ====================================================
  D    Spiny softshell turtle  ====================================================
B D                    Lizard  ====================================================
          Southern platyfish  ====================================================
    Mexican tetra (cavefish)  ====================================================
  D          Peregrine falcon  ====================================================
B D                 Zebrafish  ====================================================
  D               Rock pigeon  ====================================================
B D              Nile tilapia  ====================================================
  D            Painted turtle  ====================================================
B D                 Tetraodon  ====================================================
B D                   Chicken  ====================================================
B D              Atlantic cod  ====================================================
B D                  Platypus  ----------------------------------------------------
  D       Collared flycatcher  ====================================================
  D  Chinese softshell turtle  ====================================================
B D               Zebra finch  ====================================================
  D              Saker falcon  ====================================================
B D             X. tropicalis  ====================================================
  D           Green seaturtle  ====================================================
B D       Medium ground finch  ====================================================
B D                   Opossum  ====================================================
B D        American alligator  ====================================================
  D    White-throated sparrow  ====================================================
          Tibetan ground jay  ====================================================
B D           Tasmanian devil  ====================================================

Inserts between block 4 and 5 in window
B D                 Squirrel 9bp
      Lesser Egyptian jerboa 11bp
                Prairie vole 2bp
B D          Chinese hamster 1bp
              Golden hamster 221bp
B D                      Rat 1bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
B D                 Microbat 1bp
B D                 Hedgehog 1bp

Alignment block 5 of 93 in window, 76050129 - 76050135, 7 bps 
B D                     Human  ---tgttttc
B D                     Chimp  ---tgttttc
B D                   Gorilla  ---tgttttc
B D                 Orangutan  ---tgttttc
B D                    Gibbon  ---tgttttc
B D                    Rhesus  ---tgttttc
B D       Crab-eating macaque  ---tgttttc
B D                    Baboon  ---tgttttc
B D              Green monkey  ---tgttttc
B D                  Marmoset  ---tatcttt
B D           Squirrel monkey  ---tattttt
           Chinese tree shrew  --------tg
B D                  Squirrel  ---------t
       Lesser Egyptian jerboa  ---aggatgc
                 Prairie vole  ---------c
B D           Chinese hamster  ---------c
B D                       Rat  ------cacc
B D            Naked mole-rat  ---------c
B D                Guinea pig  ---------c
                   Chinchilla  ---------c
             Brush-tailed rat  ---------c
B D                      Pika  ----atgacc
B D                       Pig  ---tatt---
B D                    Alpaca  ------t---
               Bactrian camel  ------t---
B D                   Dolphin  ---tatt---
                 Killer whale  ---tatt---
             Tibetan antelope  ---tagt---
B D                       Cow  ---tatt---
B D                     Sheep  ---tatt---
                Domestic goat  ---tatt---
B D                     Horse  ---tatt---
B D          White rhinoceros  ---tatt---
B D                       Cat  ---ta-----
B D                       Dog  ---ta-----
B D                   Ferret   ---ca-----
B D                     Panda  ---ta-----
               Pacific walrus  ---ta-----
                 Weddell seal  ---ta-----
             Black flying-fox  ---tatt---
B D                   Megabat  ---tatt---
                Big brown bat  ---tact---
B D                  Microbat  ---tatt---
B D                  Hedgehog  ---tatt---
B D                 Armadillo  tattatt---
B D                    Tenrec  ==========
B D                     Mouse  ==========
              Golden hamster  ==========
B D                  Elephant  ----------
         Cape elephant shrew  ==========
B D                     Shrew  ==========
        David's myotis (bat)  ----------
             Star-nosed mole  ----------
B D                    Rabbit  ==========
B D                   Manatee  ----------
B D                  Bushbaby  ==========
            Cape golden mole  ----------
      Yellowbelly pufferfish  ==========
B D                      Fugu  ==========
                    Aardvark  ==========
B D               Stickleback  ==========
         Pundamilia nyererei  ==========
                 Zebra mbuna  ==========
       Burton's mouthbreeder  ==========
         Princess of Burundi  ==========
B D                    Medaka  ==========
B D                Coelacanth  ==========
B D                    Turkey  ==========
                 Spotted gar  ==========
  D              Mallard duck  ==========
  D             Scarlet macaw  ==========
  D                    Parrot  ==========
B D                Budgerigar  ==========
B D                   Wallaby  ==========
  D    Spiny softshell turtle  ==========
B D                    Lizard  ==========
          Southern platyfish  ==========
    Mexican tetra (cavefish)  ==========
  D          Peregrine falcon  ==========
B D                 Zebrafish  ==========
  D               Rock pigeon  ==========
B D              Nile tilapia  ==========
  D            Painted turtle  ==========
B D                 Tetraodon  ==========
B D                   Chicken  ==========
B D              Atlantic cod  ==========
B D                  Platypus  ----------
  D       Collared flycatcher  ==========
  D  Chinese softshell turtle  ==========
B D               Zebra finch  ==========
  D              Saker falcon  ==========
B D             X. tropicalis  ==========
  D           Green seaturtle  ==========
B D       Medium ground finch  ==========
B D                   Opossum  ==========
B D        American alligator  ==========
  D    White-throated sparrow  ==========
          Tibetan ground jay  ==========
B D           Tasmanian devil  ==========

Inserts between block 5 and 6 in window
B D                 Squirrel 3bp
                Prairie vole 4bp
B D          Chinese hamster 5bp
B D                      Rat 3bp
B D           Naked mole-rat 3bp
B D               Guinea pig 3bp
                  Chinchilla 3bp
            Brush-tailed rat 3bp

Alignment block 6 of 93 in window, 76050136 - 76050153, 18 bps 
B D                     Human  agaaaaggg-agg--cactgg
B D                     Chimp  agaaaaggg-agg--cactgg
B D                   Gorilla  agaaaaggg-agg--cactgg
B D                 Orangutan  agaaaaagg-agg--cactag
B D                    Gibbon  agaaaaagg-agg--cactgg
B D                    Rhesus  agaaaaaggaagg--cactgg
B D       Crab-eating macaque  aggaaaaggaagg--cactgg
B D                    Baboon  agaaaaaggaagg--cactgg
B D              Green monkey  agaaaaagg-agg--cactgg
B D                  Marmoset  agaaaaaga-agg--cactgg
B D           Squirrel monkey  agaaaaagg-agg--cactgg
           Chinese tree shrew  aggaaaagc-gag--cac-ag
B D                  Squirrel  aggaaaagg-gaa--cacag-
       Lesser Egyptian jerboa  -tcagaagg-gag--------
                 Prairie vole  -gaaaaggg-gag--caccac
B D           Chinese hamster  -ggaaaagg-gag--caccac
               Golden hamster  -aggaaggg-gag--caccac
B D                       Rat  -----agga-aag--------
B D            Naked mole-rat  aaaaagacg-aag--caccag
B D                Guinea pig  agaaagcgg-ggg--cactgg
                   Chinchilla  ggaaagagg-gag--cactgg
             Brush-tailed rat  agaaagagg-gag--cacggg
B D                      Pika  agcaagagg-gtc--ca----
B D                       Pig  taaaaaagg-gag--cacggg
B D                    Alpaca  agaaaaagg-gaa--cactgg
               Bactrian camel  agaaaaagg-gaa--cactgg
B D                   Dolphin  agagaaagg-gag--cactgg
                 Killer whale  agagaaagg-gag--cactgg
             Tibetan antelope  agaaagagg-gag--cactgg
B D                       Cow  agaaaaagg-gag--tgctag
B D                     Sheep  agaaaaagg-gag--cactgg
                Domestic goat  agaaaaagg-gag--cactgg
B D                     Horse  agaaaaagg-gag--cacagg
B D          White rhinoceros  agaaaaagg-gag--cactgg
B D                       Cat  --aaaaagg-gag--cactgg
B D                       Dog  -ggaaaagg-aag--cactgg
B D                   Ferret   -gagaaagg-gag--cactcg
B D                     Panda  -aaaaaaaa-gag--cactgg
               Pacific walrus  -gaaaaagg-gag--cactgg
                 Weddell seal  -gaaaaagg-gag--cactgg
             Black flying-fox  agaaaaagg-gag--ccctga
B D                   Megabat  agaaaaagg-gag--ccctga
                Big brown bat  -gaagaagg-gag--cactag
B D                  Microbat  -aaaaaagg-gcg--cgctgg
B D                  Hedgehog  agtaaaagg-gag--gagtgg
              Star-nosed mole  --cacgagg-aaggcgcgcgg
B D                 Armadillo  agaaaaaag-gag--cactgg
B D                    Tenrec  =====================
B D                     Mouse  =====================
B D                  Elephant  ---------------------
         Cape elephant shrew  =====================
B D                     Shrew  =====================
        David's myotis (bat)  ---------------------
B D                    Rabbit  =====================
B D                   Manatee  ---------------------
B D                  Bushbaby  =====================
            Cape golden mole  ---------------------
      Yellowbelly pufferfish  =====================
B D                      Fugu  =====================
                    Aardvark  =====================
B D               Stickleback  =====================
         Pundamilia nyererei  =====================
                 Zebra mbuna  =====================
       Burton's mouthbreeder  =====================
         Princess of Burundi  =====================
B D                    Medaka  =====================
B D                Coelacanth  =====================
B D                    Turkey  =====================
                 Spotted gar  =====================
  D              Mallard duck  =====================
  D             Scarlet macaw  =====================
  D                    Parrot  =====================
B D                Budgerigar  =====================
B D                   Wallaby  =====================
  D    Spiny softshell turtle  =====================
B D                    Lizard  =====================
          Southern platyfish  =====================
    Mexican tetra (cavefish)  =====================
  D          Peregrine falcon  =====================
B D                 Zebrafish  =====================
  D               Rock pigeon  =====================
B D              Nile tilapia  =====================
  D            Painted turtle  =====================
B D                 Tetraodon  =====================
B D                   Chicken  =====================
B D              Atlantic cod  =====================
B D                  Platypus  ---------------------
  D       Collared flycatcher  =====================
  D  Chinese softshell turtle  =====================
B D               Zebra finch  =====================
  D              Saker falcon  =====================
B D             X. tropicalis  =====================
  D           Green seaturtle  =====================
B D       Medium ground finch  =====================
B D                   Opossum  =====================
B D        American alligator  =====================
  D    White-throated sparrow  =====================
          Tibetan ground jay  =====================
B D           Tasmanian devil  =====================

Alignment block 7 of 93 in window, 76050154 - 76050154, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
           Chinese tree shrew  a
                 Prairie vole  a
B D           Chinese hamster  a
               Golden hamster  a
B D            Naked mole-rat  a
B D                Guinea pig  t
                   Chinchilla  a
             Brush-tailed rat  a
B D                       Pig  a
B D                    Alpaca  a
               Bactrian camel  a
B D                   Dolphin  a
                 Killer whale  a
             Tibetan antelope  a
B D                       Cow  a
B D                     Sheep  a
                Domestic goat  a
B D                     Horse  a
B D          White rhinoceros  a
B D                       Cat  a
B D                       Dog  a
B D                   Ferret   a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  g
         David's myotis (bat)  a
B D                  Microbat  a
B D                  Hedgehog  a
              Star-nosed mole  g
B D                 Armadillo  a
B D                    Tenrec  =
B D                       Rat  -
B D                     Mouse  =
B D                  Elephant  -
         Cape elephant shrew  =
B D                     Shrew  =
B D                  Squirrel  -
B D                      Pika  -
B D                    Rabbit  =
B D                   Manatee  -
      Lesser Egyptian jerboa  -
B D                  Bushbaby  =
            Cape golden mole  -
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  =
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
B D                  Platypus  -
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D           Tasmanian devil  =

Alignment block 8 of 93 in window, 76050155 - 76050161, 7 bps 
B D                     Human  gaagt-----cc
B D                     Chimp  gaagt-----cc
B D                   Gorilla  gaagt-----cc
B D                 Orangutan  caagt-----cc
B D                    Gibbon  gaaat-----cc
B D                    Rhesus  gaagt-----cc
B D       Crab-eating macaque  gaagt-----cc
B D                    Baboon  gaagt-----cc
B D              Green monkey  gaagt-----cc
B D                  Marmoset  gaggt-----cc
B D           Squirrel monkey  gaggt-----cc
           Chinese tree shrew  gaagc-----cc
B D                  Squirrel  ----agaagtat
       Lesser Egyptian jerboa  -accaggagtat
                 Prairie vole  caccaggagtgc
B D           Chinese hamster  caccaagagtgc
               Golden hamster  caccaggagtgc
B D                       Rat  ----------gc
B D            Naked mole-rat  gaatg-----ac
B D                Guinea pig  aagaa-----gc
                   Chinchilla  gagcg-----gc
             Brush-tailed rat  cagca-----gt
B D                      Pika  ----------gt
B D                       Pig  gaaat-----cc
B D                    Alpaca  ggaat-----tc
               Bactrian camel  gaaat-----cc
B D                   Dolphin  gaaat-----cc
                 Killer whale  gaaat-----cc
             Tibetan antelope  gaaat-----cc
B D                       Cow  gaaat-----cc
B D                     Sheep  gaaat-----cc
                Domestic goat  gaaat-----cc
B D                     Horse  gaagt-----cc
B D          White rhinoceros  gaagt-----cc
B D                       Cat  gaattaa---tt
B D                       Dog  aacgt-----cc
B D                   Ferret   aaaat-----cc
B D                     Panda  gaagt-----cc
               Pacific walrus  aaagt-----cc
                 Weddell seal  aaagt-----cc
             Black flying-fox  ggagt-----gt
B D                   Megabat  ggagt-----gt
                Big brown bat  gaggt-----cc
         David's myotis (bat)  gaggt-----ct
B D                  Microbat  gaggt-----ct
B D                  Hedgehog  taagt-----tc
              Star-nosed mole  cgccg-----cg
B D                 Armadillo  gaagt-----ct
  D           Green seaturtle  gaagg-----ac
B D                    Tenrec  ============
B D                     Mouse  ============
B D                  Elephant  ------------
         Cape elephant shrew  ============
B D                     Shrew  ============
B D                    Rabbit  ============
B D                   Manatee  ------------
B D                  Bushbaby  ============
            Cape golden mole  ------------
      Yellowbelly pufferfish  ============
B D                      Fugu  ============
                    Aardvark  ============
B D               Stickleback  ============
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
         Princess of Burundi  ============
B D                    Medaka  ============
B D                Coelacanth  ============
B D                    Turkey  ============
                 Spotted gar  ============
  D              Mallard duck  ============
  D             Scarlet macaw  ============
  D                    Parrot  ============
B D                Budgerigar  ============
B D                   Wallaby  ============
  D    Spiny softshell turtle  ============
B D                    Lizard  ============
          Southern platyfish  ============
    Mexican tetra (cavefish)  ============
  D          Peregrine falcon  ============
B D                 Zebrafish  ============
  D               Rock pigeon  ============
B D              Nile tilapia  ============
  D            Painted turtle  ============
B D                 Tetraodon  ============
B D                   Chicken  ============
B D              Atlantic cod  ============
B D                  Platypus  ------------
  D       Collared flycatcher  ============
  D  Chinese softshell turtle  ============
B D               Zebra finch  ============
  D              Saker falcon  ============
B D             X. tropicalis  ============
B D       Medium ground finch  ============
B D                   Opossum  ============
B D        American alligator  ============
  D    White-throated sparrow  ============
          Tibetan ground jay  ============
B D           Tasmanian devil  ============

Alignment block 9 of 93 in window, 76050162 - 76050163, 2 bps 
B D                     Human  ac
B D                     Chimp  ac
B D                   Gorilla  aa
B D                 Orangutan  ac
B D                    Gibbon  ac
B D                    Rhesus  ac
B D       Crab-eating macaque  ac
B D                    Baboon  ac
B D              Green monkey  ac
B D                  Marmoset  ac
B D           Squirrel monkey  ac
B D                  Squirrel  gc
       Lesser Egyptian jerboa  ac
                 Prairie vole  tc
B D           Chinese hamster  tc
               Golden hamster  tc
B D                       Rat  tc
B D            Naked mole-rat  aa
B D                Guinea pig  ca
                   Chinchilla  gc
             Brush-tailed rat  gc
B D                      Pika  ct
B D                       Pig  ac
B D                    Alpaca  ac
               Bactrian camel  ac
B D                   Dolphin  ac
                 Killer whale  ac
             Tibetan antelope  ac
B D                       Cow  ac
B D                     Sheep  ac
                Domestic goat  ac
B D                     Horse  ac
B D          White rhinoceros  ac
B D                       Cat  ac
B D                       Dog  ac
B D                   Ferret   ac
B D                     Panda  at
               Pacific walrus  ac
                 Weddell seal  ac
             Black flying-fox  ac
B D                   Megabat  ac
                Big brown bat  ag
         David's myotis (bat)  cc
B D                  Microbat  cc
B D                  Hedgehog  ac
              Star-nosed mole  gc
B D                 Armadillo  ac
  D            Painted turtle  aa
B D                    Tenrec  ==
B D                     Mouse  ==
B D                  Elephant  --
         Cape elephant shrew  ==
B D                     Shrew  ==
B D                    Rabbit  ==
B D                   Manatee  --
          Chinese tree shrew  --
B D                  Bushbaby  ==
            Cape golden mole  --
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
                    Aardvark  ==
B D               Stickleback  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D                    Medaka  ==
B D                Coelacanth  ==
B D                    Turkey  ==
                 Spotted gar  ==
  D              Mallard duck  ==
  D             Scarlet macaw  ==
  D                    Parrot  ==
B D                Budgerigar  ==
B D                   Wallaby  ==
  D    Spiny softshell turtle  ==
B D                    Lizard  ==
          Southern platyfish  ==
    Mexican tetra (cavefish)  ==
  D          Peregrine falcon  ==
B D                 Zebrafish  ==
  D               Rock pigeon  ==
B D              Nile tilapia  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
B D              Atlantic cod  ==
B D                  Platypus  --
  D       Collared flycatcher  ==
  D  Chinese softshell turtle  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D             X. tropicalis  ==
  D           Green seaturtle  --
B D       Medium ground finch  ==
B D                   Opossum  ==
B D        American alligator  ==
  D    White-throated sparrow  ==
          Tibetan ground jay  ==
B D           Tasmanian devil  ==

Alignment block 10 of 93 in window, 76050164 - 76050164, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
           Chinese tree shrew  c
B D                  Squirrel  c
       Lesser Egyptian jerboa  c
                 Prairie vole  c
B D           Chinese hamster  c
               Golden hamster  c
B D                       Rat  a
B D            Naked mole-rat  c
B D                Guinea pig  t
                   Chinchilla  c
             Brush-tailed rat  c
B D                      Pika  g
B D                       Pig  c
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  c
                 Killer whale  c
             Tibetan antelope  c
B D                       Cow  c
B D                     Sheep  c
                Domestic goat  c
B D                     Horse  c
B D          White rhinoceros  c
B D                       Cat  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
               Pacific walrus  c
                 Weddell seal  c
             Black flying-fox  c
B D                   Megabat  c
                Big brown bat  c
         David's myotis (bat)  c
B D                  Microbat  c
B D                  Hedgehog  c
              Star-nosed mole  c
             Cape golden mole  c
B D                 Armadillo  c
  D            Painted turtle  c
B D                    Tenrec  =
B D                     Mouse  =
B D                  Elephant  -
         Cape elephant shrew  =
B D                     Shrew  =
B D                    Rabbit  =
B D                   Manatee  -
B D                  Bushbaby  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  =
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
B D                  Platypus  -
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  -
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D           Tasmanian devil  =

Alignment block 11 of 93 in window, 76050165 - 76050167, 3 bps 
B D                     Human  tgg
B D                     Chimp  tgg
B D                   Gorilla  tga
B D                 Orangutan  tgg
B D                    Gibbon  tgg
B D                    Rhesus  tgg
B D       Crab-eating macaque  tgg
B D                    Baboon  tgg
B D              Green monkey  tgg
B D                  Marmoset  tgg
B D           Squirrel monkey  tgg
           Chinese tree shrew  cgg
B D                  Squirrel  tgg
       Lesser Egyptian jerboa  tgg
                 Prairie vole  tgg
B D           Chinese hamster  tgg
               Golden hamster  tgg
B D                       Rat  tgg
B D            Naked mole-rat  tgg
B D                Guinea pig  c--
                   Chinchilla  tgg
             Brush-tailed rat  tgg
B D                      Pika  tcg
B D                       Pig  cgg
B D                    Alpaca  tgg
               Bactrian camel  tgg
B D                   Dolphin  tgg
                 Killer whale  tgg
             Tibetan antelope  tgg
B D                       Cow  tgg
B D                     Sheep  tgg
                Domestic goat  tgg
B D                     Horse  tgg
B D          White rhinoceros  cgg
B D                       Cat  tgg
B D                       Dog  tgg
B D                   Ferret   tgg
B D                     Panda  tgg
               Pacific walrus  tgg
                 Weddell seal  tgg
             Black flying-fox  tgg
B D                   Megabat  agg
                Big brown bat  tgg
         David's myotis (bat)  tgg
B D                  Microbat  tgg
B D                  Hedgehog  tgg
              Star-nosed mole  tgc
B D                  Elephant  tgg
B D                   Manatee  tgg
             Cape golden mole  tgg
B D                 Armadillo  ttg
  D            Painted turtle  tgg
B D                    Tenrec  ===
B D                     Mouse  ===
         Cape elephant shrew  ===
B D                     Shrew  ===
B D                    Rabbit  ===
B D                  Bushbaby  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
                    Aardvark  ===
B D               Stickleback  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
B D                    Medaka  ===
B D                Coelacanth  ===
B D                    Turkey  ===
                 Spotted gar  ===
  D              Mallard duck  ===
  D             Scarlet macaw  ===
  D                    Parrot  ===
B D                Budgerigar  ===
B D                   Wallaby  ===
  D    Spiny softshell turtle  ===
B D                    Lizard  ===
          Southern platyfish  ===
    Mexican tetra (cavefish)  ===
  D          Peregrine falcon  ===
B D                 Zebrafish  ===
  D               Rock pigeon  ===
B D              Nile tilapia  ===
B D                 Tetraodon  ===
B D                   Chicken  ===
B D              Atlantic cod  ===
B D                  Platypus  ---
  D       Collared flycatcher  ===
  D  Chinese softshell turtle  ===
B D               Zebra finch  ===
  D              Saker falcon  ===
B D             X. tropicalis  ===
  D           Green seaturtle  ---
B D       Medium ground finch  ===
B D                   Opossum  ===
B D        American alligator  ===
  D    White-throated sparrow  ===
          Tibetan ground jay  ===
B D           Tasmanian devil  ===

Inserts between block 11 and 12 in window
B D                 Squirrel 360bp
      Lesser Egyptian jerboa 1bp
                Prairie vole 1bp
B D          Chinese hamster 1bp
              Golden hamster 1bp
B D                      Rat 1bp
B D           Naked mole-rat 1bp
                  Chinchilla 1bp
            Brush-tailed rat 1bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                 Hedgehog 1bp
             Star-nosed mole 1bp
B D                 Elephant 1bp
B D                  Manatee 1bp
            Cape golden mole 1bp
B D                Armadillo 1bp

Alignment block 12 of 93 in window, 76050168 - 76050172, 5 bps 
B D                     Human  agaca
B D                     Chimp  agaca
B D                   Gorilla  agaca
B D                 Orangutan  agaca
B D                    Gibbon  agaca
B D                    Rhesus  agaca
B D       Crab-eating macaque  agaca
B D                    Baboon  agaca
B D              Green monkey  agaca
B D                  Marmoset  agaca
B D           Squirrel monkey  agaca
           Chinese tree shrew  aggca
B D                  Squirrel  aaaaa
       Lesser Egyptian jerboa  aatca
                 Prairie vole  gacaa
B D           Chinese hamster  gacaa
               Golden hamster  gacaa
B D                       Rat  cacat
B D            Naked mole-rat  gataa
B D                Guinea pig  -atga
                   Chinchilla  ggtaa
             Brush-tailed rat  ggtga
B D                       Pig  gacac
B D                    Alpaca  gataa
               Bactrian camel  gataa
B D                   Dolphin  gatat
                 Killer whale  gatat
             Tibetan antelope  gatat
B D                       Cow  gatat
B D                     Sheep  gatat
                Domestic goat  gatat
B D                     Horse  gacat
B D          White rhinoceros  gatat
B D                       Cat  gctat
B D                       Dog  gccat
B D                   Ferret   gccat
B D                     Panda  gccat
               Pacific walrus  gccat
                 Weddell seal  gccat
             Black flying-fox  ggtat
B D                   Megabat  ggtat
                Big brown bat  ggg--
         David's myotis (bat)  gagat
B D                  Microbat  gagat
B D                  Hedgehog  gatgt
              Star-nosed mole  gctgg
B D                  Elephant  gata-
B D                   Manatee  gata-
             Cape golden mole  ggta-
B D                 Armadillo  cata-
  D            Painted turtle  agtaa
B D                    Tenrec  =====
B D                     Mouse  =====
         Cape elephant shrew  =====
B D                     Shrew  =====
B D                      Pika  -----
B D                    Rabbit  =====
B D                  Bushbaby  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
                    Aardvark  =====
B D               Stickleback  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D                    Medaka  =====
B D                Coelacanth  =====
B D                    Turkey  =====
                 Spotted gar  =====
  D              Mallard duck  =====
  D             Scarlet macaw  =====
  D                    Parrot  =====
B D                Budgerigar  =====
B D                   Wallaby  =====
  D    Spiny softshell turtle  =====
B D                    Lizard  =====
          Southern platyfish  =====
    Mexican tetra (cavefish)  =====
  D          Peregrine falcon  =====
B D                 Zebrafish  =====
  D               Rock pigeon  =====
B D              Nile tilapia  =====
B D                 Tetraodon  =====
B D                   Chicken  =====
B D              Atlantic cod  =====
B D                  Platypus  -----
  D       Collared flycatcher  =====
  D  Chinese softshell turtle  =====
B D               Zebra finch  =====
  D              Saker falcon  =====
B D             X. tropicalis  =====
  D           Green seaturtle  -----
B D       Medium ground finch  =====
B D                   Opossum  =====
B D        American alligator  =====
  D    White-throated sparrow  =====
          Tibetan ground jay  =====
B D           Tasmanian devil  =====

Inserts between block 12 and 13 in window
            Black flying-fox 1bp
B D                  Megabat 1bp
B D                 Elephant 2bp
B D                  Manatee 2bp
            Cape golden mole 2bp
B D                Armadillo 1bp

Alignment block 13 of 93 in window, 76050173 - 76050173, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  a
B D           Squirrel monkey  a
           Chinese tree shrew  g
B D                  Squirrel  a
       Lesser Egyptian jerboa  c
                 Prairie vole  g
B D           Chinese hamster  g
               Golden hamster  g
B D                       Rat  c
B D            Naked mole-rat  g
B D                Guinea pig  t
                   Chinchilla  g
             Brush-tailed rat  g
B D                      Pika  a
B D                       Pig  a
B D                    Alpaca  g
               Bactrian camel  g
B D                   Dolphin  g
                 Killer whale  g
             Tibetan antelope  g
B D                       Cow  g
B D                     Sheep  g
                Domestic goat  g
B D                     Horse  g
B D          White rhinoceros  g
B D                       Cat  g
B D                       Dog  g
B D                   Ferret   g
B D                     Panda  g
               Pacific walrus  g
                 Weddell seal  g
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  g
         David's myotis (bat)  g
B D                  Microbat  g
B D                  Hedgehog  g
              Star-nosed mole  g
                     Aardvark  g
B D                 Armadillo  a
  D            Painted turtle  a
B D                    Tenrec  =
B D                     Mouse  =
B D                  Elephant  =
         Cape elephant shrew  =
B D                     Shrew  =
B D                    Rabbit  =
B D                   Manatee  =
B D                  Bushbaby  =
            Cape golden mole  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  =
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
B D                  Platypus  -
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  -
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D           Tasmanian devil  =

Inserts between block 13 and 14 in window
          Chinese tree shrew 1bp

Alignment block 14 of 93 in window, 76050174 - 76050248, 75 bps 
B D                     Human  --aattggaggccacaggcttcacaggc-------------------catatag--gaaac---catta-
B D                     Chimp  --aatttgaggccacaggcttcacaggc-------------------catatag--gaaac---catta-
B D                   Gorilla  --aatttgaggccacaggcttcacaggc-------------------catatag--gaaac---catta-
B D                 Orangutan  --aatttgaggccacaggcttcacaggc-------------------catacag--gaaac---catta-
B D                    Gibbon  --aatttggggccacaggcttcacaggc-------------------catatag--gaaac---catta-
B D                    Rhesus  --aatttgaggccacaggcttcataggc-------------------catacag--gaaac---cacta-
B D       Crab-eating macaque  --aatttgaggccacaggcttcataggc-------------------catacag--gaaac---cacta-
B D                    Baboon  --aatttgaggccacaggcttcataggc-------------------catacag--gaaac---cacta-
B D              Green monkey  --aatttgaggccacaggcttcataggc-------------------catacag--aaaac---cacta-
B D                  Marmoset  --aatttgagatgacaggcttaacaggc-------------------cacatag--gaaac---catta-
B D           Squirrel monkey  --aatttgagatgacaggcttaacaggc-------------------cacatag--gaaac---catta-
           Chinese tree shrew  --aagctgggctcacaggcttcacgggtaa-----------------caaacagatggaac---cactg-
B D                  Squirrel  --aatttgagatcacagg----------------------------------at--gaaac---catta-
       Lesser Egyptian jerboa  --aggatgaagc----------------------------------------------------cacta-
                 Prairie vole  --aggctgaaaccatggg----------------------------------at--ggt-----cacta-
B D           Chinese hamster  --aggctgaaaccacggc----------------------------------at--gac-----cacta-
               Golden hamster  --aggctgaaaccacagg----------------------------------at--ggc-----cacta-
B D                       Rat  --cagctgagaccactgg----------------------------------at--gatgg---cagaa-
B D            Naked mole-rat  --aatgggaggccacggg----------------------------------at--gaaac---catta-
B D                Guinea pig  --ca-cgaagccatcatgacc-------------------------------at--gaagc---catca-
                   Chinchilla  --ca-gggagtctgcggg----------------------------------at--gaaac---catca-
             Brush-tailed rat  --aatgggagaccac-gg----------------------------------at--gaaac---catca-
B D                      Pika  --gacaggaagccacaggctcggcgggt--------------------actggt--gaggc---ctgca-
B D                       Pig  --aacttcagacctaaggct-aacaggc-------------------aacagag--aaaac---catca-
B D                    Alpaca  --aatttgagaccaaaggcctaacaggt-------------------actacac--gaaac---catta-
               Bactrian camel  --aatttgagaccaaaggcctaacaggt-------------------actacac--gaaa----catta-
B D                   Dolphin  --aatttgagatcaaagctttaacaggt-------------------aatacgt--gaaac---catta-
                 Killer whale  --aatttgagatcaaagctttaacaggt-------------------aatacgt--gaaac---catta-
             Tibetan antelope  --gatttgagaccagaggctcaacagat-------------------aaaacat--aacat---gtcct-
B D                       Cow  --gatttgagaccagaggctcaacaggt-------------------aaaacat--gaagc---catta-
B D                     Sheep  --gatttgagaccagatgctcaacagat-------------------aaaacat--gaagc---caata-
                Domestic goat  --gatttgagaccagaggctcaacagat-------------------aaaacat--gaagc---catta-
B D                     Horse  --aatttgagaccaaaggcttaacagtt-------------------aatatat--gaaac---catta-
B D          White rhinoceros  --aatttaagaccaaaggcttaacag------------------------------gaaac---catta-
B D                       Cat  --aacttgagaccaaaggcttaat----------------------------at--gaacc---catta-
B D                       Dog  --agtttgagaccaaaggcttagcaggt-------------------aaaaaat--gaacc---catta-
B D                   Ferret   --aatttgtgactaaaggcttaacgggg-------------------aataaat--gaacc---catta-
B D                     Panda  --aatttgcgaccaaaggcttaacaggt-------------------aataaat--gaacc---catta-
               Pacific walrus  --aatttgcaaccaaaggcttcacaggt-------------------aataaat--gaacc---catta-
                 Weddell seal  --aatttgcaaccaaaggcttcacaggt-------------------aataaat--gaatc---catta-
             Black flying-fox  --aatttcagaccaaaggcttaacaggt-------------------aacatgg--gaaac---cattt-
B D                   Megabat  --aatttcagaccaaaggcttaacaggt-------------------aacatgg--gaaac---cattt-
                Big brown bat  --aatttgagaccaaaggcctcgccggt-------------------aacagag--gaaac---c---a-
         David's myotis (bat)  --aatcggagagctaaggcctcgcagg--------------------aacagag--gaaac---cataa-
B D                  Microbat  --aatttgagagcaaaggcctagcaggt-------------------aatagcg--gaaac---catga-
B D                  Hedgehog  --aatctgagaccaaaggtttaccagct-------------------aatctgt--gaaac---catta-
              Star-nosed mole  -----ctg-gcccacaggctcggcacgc-------------------cgtacgt--gaaac---cgtca-
B D                  Elephant  --aatttaagaccccaggcctaacaggt-------------------aatgtat--gaaac---tattc-
          Cape elephant shrew  --aatctgagaccccgggcccaacaagt-------------------aatgtag--aaaat---ga----
B D                   Manatee  --aatttgagagcccaggcctaacaggt-------------------aatgtat--gaaac---gatta-
             Cape golden mole  --aatacgagcccctaggactgacaggg-------------------aatgtat--gaagc---tttta-
                     Aardvark  --aatttgaggccctaggcctaccaggt-------------------aatgca---gggcc---cgtcg-
B D                 Armadillo  --aatttgagaactaagccctaataggc-------------------aatattt--gaaac---catca-
  D           Green seaturtle  ---atctggaaactgaattatct------------------------catacat--aaaatacgcattgg
  D            Painted turtle  agaataagaaaattcaaattttgaaggacaagtggaaacaatcatctcataca---aaaaaatgcattgg
B D                    Tenrec  ======================================================================
B D                     Mouse  ======================================================================
B D                     Shrew  ======================================================================
B D                    Rabbit  ======================================================================
B D                  Bushbaby  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D               Stickleback  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                    Turkey  ======================================================================
                 Spotted gar  ======================================================================
  D              Mallard duck  ======================================================================
  D             Scarlet macaw  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
B D                   Wallaby  ======================================================================
  D    Spiny softshell turtle  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
  D          Peregrine falcon  ======================================================================
B D                 Zebrafish  ======================================================================
  D               Rock pigeon  ======================================================================
B D              Nile tilapia  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
B D                  Platypus  ----------------------------------------------------------------------
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D               Zebra finch  ======================================================================
  D              Saker falcon  ======================================================================
B D             X. tropicalis  ======================================================================
B D       Medium ground finch  ======================================================================
B D                   Opossum  ======================================================================
B D        American alligator  ======================================================================
  D    White-throated sparrow  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  ---------ggaggaacag-------gg-----g--agggagaaatta---at-ttctc
                        Chimp  ---------ggaggaacag-------gg-----g--agggagaaatta---at-ttctc
                      Gorilla  ---------ggaggaacag-------gg-----g--agggagaaatta---at-ttctt
                    Orangutan  ---------ggaggaacag-------gg-----g--agggagaaatta---at-ttctc
                       Gibbon  ---------tgaggaacag-------gg-----a--agggagaaatta---at-ttctc
                       Rhesus  ---------ggaggaacag-------gg-----g--agggagggatta---at-ttctc
          Crab-eating macaque  ---------ggaggaacag-------gg-----g--agggagggatta---at-ttctc
                       Baboon  ---------ggaggaacag-------gg-----g--agggagggatta---at-ttctc
                 Green monkey  ---------ggaggaacag-------gg-----g--agggagggatta---at-ttctc
                     Marmoset  ---------agaagaacaa-------gg-----g--agagaaaaatta---at-ttctg
              Squirrel monkey  ---------ggaagaacag-------gg-----g--agagaaaaattc---at-ttctg
           Chinese tree shrew  ---------gcaggagcag-------gg-----t--ag-gagagattg---at-ttctc
                     Squirrel  ---------ggaagaaaa---------t-----t--ataaaaagaaat---ga-att--
       Lesser Egyptian jerboa  ---------tgagaacagg-------at-----t--ctgcgaaacaaa---ct-gtt--
                 Prairie vole  ---------tgaataagag-------gt-----c--atgagaataaag---tc-ata--
              Chinese hamster  ---------tgaacaacag-------gc-----c--atgagaacaaag---tc-cca--
               Golden hamster  ---------agagcaacag-------gc-----c--atgaggacaaag---tt-gta--
                          Rat  ---------tgaccaaggg-------a---------atgacca----------------
               Naked mole-rat  ---------tgaagaaaag-------ga-----c--atggagaaatgc-attt-ctc--
                   Guinea pig  ---------tgaagagta--------ga-----c--atggagaaatga---ct-ttc--
                   Chinchilla  ---------tgaagaaaag-------ga-----t--gtggagaacgaa---tt-ctc--
             Brush-tailed rat  ---------tgaagaaaag-------ga-----g--gtagagaatgaa--ttt-ctc--
                         Pika  ---------ggggca--gg-------gc-----t--ggaaggaaggaa---ct-gcc--
                          Pig  ---------ggagacacag-------ga-----t--acagagcaaaga---ct-ttcgc
                       Alpaca  ---------ggagaaacag-------ga-----t--agagagaaaaga---at-tgctc
               Bactrian camel  ---------ggagaaacag-------ga-----t--agagagaaaaga---at-tgctc
                      Dolphin  ---------ggagaaagag-------ga-----t--agacaa--aaga---aa-ttctc
                 Killer whale  ---------ggagaaacag-------ga-----t--agacaa--aaga---aa-ttctc
             Tibetan antelope  ---------ggagaagcag-------ga-----c--agagcg--aaga---gg-ttctc
                          Cow  ---------ggagaagcag-------ga-----c--agagggaaaaga---gt-ttctc
                        Sheep  ---------ggagaagcag-------ga-----c--agaggg-aaaga---gt-ttctc
                Domestic goat  ---------ggagaagcag-------ga-----c--agaggg-aaaga---gt-ttctc
                        Horse  ---------ggaggaacag-------ga-----t--agagaa--aatg---at-ttctc
             White rhinoceros  ---------ggaggaacag-------ga-----tagagagaa--aaga---at-ttctc
                          Cat  ---------agaggaagag-------ga-----t--ggagag--aaaa---at-ctctc
                          Dog  ----------gaagaacag-------ga-----t--ggagag---aaa---at-ttctc
                      Ferret   ---------ggaagaacag-------ga-----t--ggagag---aaa---at-tcctc
                        Panda  ---------ggaagaacag-------ga-----t--ggaga-----aa---at-ttctc
               Pacific walrus  ---------ggaagaacag-------ga-----t--ggagag---gaa---at-ttctt
                 Weddell seal  ---------ggaagaacag-------ga-----t--ggagag---gaa---at-ttctc
             Black flying-fox  ---------ggaaaaacag-------gacagaga--gaagag-----a---at-ttctc
                      Megabat  ---------ggaaaaacaa-------gacagaga--ggagag-----a---at-ttctc
                Big brown bat  ---------gcaggagcag-------ga-----g--agagag-----a---ac-tcctc
         David's myotis (bat)  ---------ggagaagcag--------------g--agaggg-----a---ac-tcctc
                     Microbat  ---------ggagaagcag-------ga-----g--agaggg-----a---ac-tcctc
                     Hedgehog  ---------ggaagactaactaggacag-----a--agggaa---agaatttt-ttttc
              Star-nosed mole  ---------cgcggaacag-------gg-----c--aggaaa---aga---tt-ctctg
                     Elephant  ---------ggaggaacag-------gg-----t--aaagggaaaaga---at-ttctc
          Cape elephant shrew  ----------gggaaacag-------gg-----c--agagggaaatga---at------
                      Manatee  ---------ggaggaacag-------gg-----t--aaagggaaaaga---at--tctc
             Cape golden mole  ---------ggaggaactg-------ag-----t--aaaagggaaaag---acattttt
                     Aardvark  ---------ggaggcacag-------gg-----t--gaagggaggaac---tc--tccc
                    Armadillo  ---------ggaggcacaa-------gg-----t--agagggaaaaga---at-tcctc
              Green seaturtle  atg-atgttggagaagatg-------tc-----c--aggcagagtgca---at------
               Painted turtle  atgaatggcggagattatg-------tc-----c--aggcagagttca---at------
                       Tenrec  ===========================================================
                        Mouse  ===========================================================
                        Shrew  ===========================================================
                       Rabbit  ===========================================================
                     Bushbaby  ===========================================================
       Yellowbelly pufferfish  ===========================================================
                         Fugu  ===========================================================
                  Stickleback  ===========================================================
          Pundamilia nyererei  ===========================================================
                  Zebra mbuna  ===========================================================
        Burton's mouthbreeder  ===========================================================
          Princess of Burundi  ===========================================================
                       Medaka  ===========================================================
                   Coelacanth  ===========================================================
                       Turkey  ===========================================================
                  Spotted gar  ===========================================================
                 Mallard duck  ===========================================================
                Scarlet macaw  ===========================================================
                       Parrot  ===========================================================
                   Budgerigar  ===========================================================
                      Wallaby  ===========================================================
       Spiny softshell turtle  ===========================================================
                       Lizard  ===========================================================
           Southern platyfish  ===========================================================
     Mexican tetra (cavefish)  ===========================================================
             Peregrine falcon  ===========================================================
                    Zebrafish  ===========================================================
                  Rock pigeon  ===========================================================
                 Nile tilapia  ===========================================================
                    Tetraodon  ===========================================================
                      Chicken  ===========================================================
                 Atlantic cod  ===========================================================
                     Platypus  -----------------------------------------------------------
          Collared flycatcher  ===========================================================
     Chinese softshell turtle  ===========================================================
                  Zebra finch  ===========================================================
                 Saker falcon  ===========================================================
                X. tropicalis  ===========================================================
          Medium ground finch  ===========================================================
                      Opossum  ===========================================================
           American alligator  ===========================================================
       White-throated sparrow  ===========================================================
           Tibetan ground jay  ===========================================================
              Tasmanian devil  ===========================================================

Inserts between block 14 and 15 in window
B D                 Squirrel 5bp
      Lesser Egyptian jerboa 1bp
B D                     Pika 1bp

Alignment block 15 of 93 in window, 76050249 - 76050283, 35 bps 
B D                     Human  aatgtgat-g-------ga-gcccaga---ggcccttgtttgct-ccc
B D                     Chimp  aatgtgat-g-------ga-gcccaga---ggcccttgtttgct-ccc
B D                   Gorilla  aatgtgat-g-------ga-gcccaga---ggcccttgtttgct-ccc
B D                 Orangutan  agtgtgat-g-------ga-gcccaga---ggcccttgtttgct-ccc
B D                    Gibbon  aatgtgat-g-------gc-acccaga---ggcccttgtttgct-ccc
B D                    Rhesus  agtgtaat-g-------ga-gcccaga---agcctttatttg---tcc
B D       Crab-eating macaque  agtgtaat-g-------ga-gcccaga---agcctttatttg---tcc
B D                    Baboon  agtgtaat-g-------ga-gcccaga---agcctttatttg---tcc
B D              Green monkey  agtgtaat-g-------ga-gcccaga---agcctttatttg---tcc
B D                  Marmoset  aatgtgat-g-------ga-gcccaga---ggcccttttttg---tcc
B D           Squirrel monkey  aatgtgat-g-------ga-gcccaaa---ggcccttttttg---tcc
           Chinese tree shrew  gacctgat-g-------ga-gcccagg---ggccactg-ctg---tct
B D                  Squirrel  aatctgat-g-------ga-gcccaga---ggctcttgctgttt-gtc
       Lesser Egyptian jerboa  aaattgat-g-------gattcccaca---ggccattgttgctt-att
                 Prairie vole  aacc---t-g-------ga-gcccata---ggcctc--ttgtta-aca
B D           Chinese hamster  accctgat-g-------ga-gcccaga---ggtctgtgttacta-ata
               Golden hamster  aacctgat-g-------gg-gcccaga---ggcctctgttatta-gta
B D                     Mouse  -----agt-gtgaaccgga-gcccaga---ggcctctactgctt-aca
B D                       Rat  -----------------ga-gcccaga---ggcctctgctgctt-aca
B D            Naked mole-rat  aacccgac-a-------ga-gcccgga---ggcccctggtgctt-gcc
B D                Guinea pig  caatcctg-a-------ga-gcccagg---gacccctgttgctt-gtc
                   Chinchilla  ctcccaaa-t-------ga-gcccaga---ggccgttgctgctt-gcc
             Brush-tailed rat  aacccaac-a-------ga-gcccaaa---ggcccctgctgctt-gcc
B D                      Pika  -aatcttg-g-------gg-gcccaga---agcctttgctaaca-ggt
B D                       Pig  aacctggt-g-------gg-gcccagaagaggctgccgtggtt--atg
B D                    Alpaca  aacctgatgg-------ga-gcctagaaggggcttctgttgtt-----
               Bactrian camel  aacccgatgg-------ga-gcccagaaggggcttctgttgtt-----
B D                   Dolphin  aacctgat-g-------ga-gcccagaagaggcttctgttgttc-att
                 Killer whale  aacctgat-g-------ga-gcccagaagaggcttctgttgttc-att
             Tibetan antelope  aatttggt-g-------ga-gcccagaggaggcttctcttgttg-gtc
B D                       Cow  atcctggt-g-------ga-gcccagaggaggcttctcttgttg-gtc
B D                     Sheep  aatttggt-g-------ga-gcacagaggaggcttctcttgttg-gtc
                Domestic goat  aatttggt-g-------ga-gcccagaggaggcttctcttgttg-gtc
B D                     Horse  aacttgat-g-------gc-ggccaga---ggcttttgttattt-gtt
B D          White rhinoceros  aacctgat-g-------gc-ggccaga---ggcttttgttgttt-gtt
B D                       Cat  actctgat-g-------ga-gttcaca---ggcatct---gttt-gtc
B D                       Dog  aacctaat-g-------ga-gttcaga---ggcttctgtcattt-gtc
B D                   Ferret   aacctgat-g-------ga-gttcaga---ggcttctgtcgttt-gtc
B D                     Panda  aacctgat-g-------ga-gttcaga---ggcttct---gttt-gtc
               Pacific walrus  aacctgat-g-------ga-gttcaga---ggcttctgtcgttt-gtc
                 Weddell seal  aacctgatgg-------ga-gttcaga---ggcttctgttgttt-gtc
             Black flying-fox  aacctgat-g-------ga-gcccaga---ggcttttgctgttt-gtt
B D                   Megabat  aacctgat-g-------ga-gcccaga---ggctttcgttgttt-gtt
                Big brown bat  aacctgac-g-------ga-gcccaga---ggcttttgttgctt-ctt
         David's myotis (bat)  agcccgat-g-------ga-gcccgga---ggcttctgttgctt-gtc
B D                  Microbat  agcctgat-g-------ga-gcccaga---ggcttctgttgctt-gtc
B D                  Hedgehog  agcctgat-c-------ga-gctcagg---ggcttttgtc---t-gtc
              Star-nosed mole  aacccgac-g-------ga-gcccaga---ggtgtttgccattt-gtt
B D                  Elephant  agtctgac-t-------ga-acccagg---ggctttgctgagatgggc
          Cape elephant shrew  aatctcac-a-------ga-g-acagg---ggcttctcagagac-atc
B D                   Manatee  aacctgac-t-------ga-gcccaga---gactttgctgagatgggc
             Cape golden mole  accctgac-t-------ga-c-tcagg---ggccttgctgagatggtc
                     Aardvark  cgcatgac-t-------ca-gcccaga---ggcgccg-tgagct-gct
B D                 Armadillo  cacttgac-g-------aa-gcccaga---ggctttactgacatgacc
  D           Green seaturtle  --tatgaa-g-------ag-gaacttt---ggccacagatgaat-tac
  D            Painted turtle  --tataat-g-------ag-gaacttt---ggccactgttgaat-tac
B D                    Tenrec  ================================================
B D                     Shrew  ================================================
B D                    Rabbit  ================================================
B D                  Bushbaby  ================================================
      Yellowbelly pufferfish  ================================================
B D                      Fugu  ================================================
B D               Stickleback  ================================================
         Pundamilia nyererei  ================================================
                 Zebra mbuna  ================================================
       Burton's mouthbreeder  ================================================
         Princess of Burundi  ================================================
B D                    Medaka  ================================================
B D                Coelacanth  ================================================
B D                    Turkey  ================================================
                 Spotted gar  ================================================
  D              Mallard duck  ================================================
  D             Scarlet macaw  ================================================
  D                    Parrot  ================================================
B D                Budgerigar  ================================================
B D                   Wallaby  ================================================
  D    Spiny softshell turtle  ================================================
B D                    Lizard  ================================================
          Southern platyfish  ================================================
    Mexican tetra (cavefish)  ================================================
  D          Peregrine falcon  ================================================
B D                 Zebrafish  ================================================
  D               Rock pigeon  ================================================
B D              Nile tilapia  ================================================
B D                 Tetraodon  ================================================
B D                   Chicken  ================================================
B D              Atlantic cod  ================================================
B D                  Platypus  ------------------------------------------------
  D       Collared flycatcher  ================================================
  D  Chinese softshell turtle  ================================================
B D               Zebra finch  ================================================
  D              Saker falcon  ================================================
B D             X. tropicalis  ================================================
B D       Medium ground finch  ================================================
B D                   Opossum  ================================================
B D        American alligator  ================================================
  D    White-throated sparrow  ================================================
          Tibetan ground jay  ================================================
B D           Tasmanian devil  ================================================

Inserts between block 15 and 16 in window
  D          Green seaturtle 1bp
  D           Painted turtle 1bp

Alignment block 16 of 93 in window, 76050284 - 76050305, 22 bps 
B D                     Human  ----tta----------------c--gacc---tcacc----t--c--------------a---aaaaaa
B D                     Chimp  ----tta----------------c--gacc---tcacc----t--c--------------a---aaaaaa
B D                   Gorilla  ----tga----------------c--gacc---tcacc----t--c--------------a---aaaaaa
B D                 Orangutan  ----tga----------------c--gacc---tcacc----t--c--------------a---aaaaaa
B D                    Gibbon  ----tga----------------c--gacc---acacc----t--c--------------a---aaaaaa
B D                    Rhesus  ----cga----------------c--aacc---acacc----t--c---------aaaaaa---aaaaaa
B D       Crab-eating macaque  ----cga----------------c--aacc---acacc----t--c--------aaaaaaa---aaaaaa
B D                    Baboon  ----cga----------------c--gacc---acacc----t--c---------aaaaaa---aaaa--
B D              Green monkey  ----cga----------------c--gacc---acacc----t--caaaaacaaaaaaaaa---aaaaaa
B D                  Marmoset  ----tga----------------c--tacc---acacc----t--t--------------a---aaa---
B D           Squirrel monkey  ----tga----------------c--tacc---acacc----t--t--------------a---aaaa-a
           Chinese tree shrew  ----ggg----------------c------------tc----t--a--------------g---gagaga
B D                  Squirrel  ----agc----------------t--gacc---ac-tc----t--g--------------cctaaaaaag
       Lesser Egyptian jerboa  ----agc---------------ac--caac---atacc----t--a--------------a---aaac--
                 Prairie vole  ----agc----------------t--gatc---acatc----t--g--------------c---aaacgc
B D           Chinese hamster  ----aga----------------t--gatc---acatc----t--g--------------c---aaacgc
               Golden hamster  ----aga----------------t--gatc---acatc----a--g--------------c---aaaca-
B D                     Mouse  ----agc----------------t--gatc---acatc----t--a--------------c---aaatgg
B D                       Rat  ----agc----------------t--catc---acatc----t--a--------------c---aaacag
B D            Naked mole-rat  ----agc----------------t--gaccactacatc----t-ga--------------a---aaac--
B D                Guinea pig  ----agc----------------t--ggccactacatc----t--g--------------a---acac--
                   Chinchilla  ----agc----------------t--gacctctgcatc----t--a--------------a---aaac--
             Brush-tailed rat  ----agc----------------t--gagctctacatc----t--a--------------a---aagc--
B D                      Pika  ----gactgtgacatgtaaaatgt--gaccatgacatg----t--a--------------a---aaagtg
B D                       Pig  ----agc----------------c--agtcaccacacc----t--a--------------a---agcc--
B D                    Alpaca  --------------------------tgtcaccatacc----t--a--------------a---acag--
               Bactrian camel  --------------------------tgtcaccatacc----t--a--------------a---acag--
B D                   Dolphin  ----agc----------------c--aatcaccacacc----t--a--------------a---atcc--
                 Killer whale  ----agc----------------c--aatcaccacacc----t--a--------------a---atac--
             Tibetan antelope  ----agc----------------caaaatcgccacatc----t--a--------------a---gtac--
B D                       Cow  ----agc----------------c--aatcgccacatc----t--a--------------a---atac--
B D                     Sheep  ----agc----------------c--aatcgccacatc----t--a--------------a---gcac--
                Domestic goat  ----agc----------------c--aatcgccacatc----t--a--------------a---acac--
B D                     Horse  ----agc----------------c--agtcgccacacc----taaa--------------a---aaac--
B D          White rhinoceros  ----agc----------------c--aatcaccacacc----t-aa--------------a---aaat--
B D                       Cat  ----agc----------------a--gaccaccatagc----t--a--------------a---aaat--
B D                       Dog  ----agc----------------c--catcactagatc----t--a--------------a---aaat--
B D                   Ferret   ----agc----------------c--catcaccaaatc----t--a--------------a---aaat--
B D                     Panda  ----agc----------------c--catcactagatc----t--a--------------a---aaat--
               Pacific walrus  ----agc----------------c--catcactagatc----t--a--------------a---aaat--
                 Weddell seal  ----agc----------------c--catcactagatc----t--a--------------a---aaat--
             Black flying-fox  ----agc----------------c--aatcaccacacc----t--a--------------a---aaat--
B D                   Megabat  ----agc----------------c--aatcgccacacc----t--a--------------a---aaat--
                Big brown bat  ----agc----------------c--gagcacc---cc----c--c--------------a---aaac--
         David's myotis (bat)  ----ggc----------------c--gagctcc---cc----c--c--------------a---gaac--
B D                  Microbat  ----agc----------------c--gagctcc---cc----c--c--------------a---aaac--
B D                  Hedgehog  ----agt----------------g--aatcaccgcatc----a--a-------------ga---caat--
              Star-nosed mole  ----agc----------------c--aatca---catt----a--a--------------a---cacc--
B D                  Elephant  ----agc----------------t--gacccccgcagc----t--c--------------a---gaaa--
          Cape elephant shrew  ----agc----------------t--gaaccccacacc----t--c--------------a---aaaa--
B D                   Manatee  ----agc----------------t--ga-ccccacacc----t--c--------------a---gaaa--
             Cape golden mole  ----aac----------------t--gacttccacaca----t--c--------------a---gaaa--
                     Aardvark  ----tgc----------------t--ga-acccatacc----t--c--------------c---aaag--
B D                 Armadillo  ----agc----------------t--gacactgacaccgcatt--c--------------a---aaaa--
  D              Mallard duck  ttgcagc----------------g-------tttcatc----a--a--------------a---gaaa--
  D           Green seaturtle  ctgcagc----------------a--caccttgttatt----g--a--------------t---ggat--
  D            Painted turtle  ctgcagc----------------a--caccttgttatt----g--a--------------t---ggag--
B D                    Tenrec  ======================================================================
B D                     Shrew  ======================================================================
B D                    Rabbit  ======================================================================
B D                  Bushbaby  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D               Stickleback  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                    Turkey  ======================================================================
                 Spotted gar  ======================================================================
  D             Scarlet macaw  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
B D                   Wallaby  ======================================================================
  D    Spiny softshell turtle  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
  D          Peregrine falcon  ======================================================================
B D                 Zebrafish  ======================================================================
  D               Rock pigeon  ======================================================================
B D              Nile tilapia  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
B D                  Platypus  ----------------------------------------------------------------------
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D               Zebra finch  ======================================================================
  D              Saker falcon  ======================================================================
B D             X. tropicalis  ======================================================================
B D       Medium ground finch  ======================================================================
B D                   Opossum  ======================================================================
B D        American alligator  ======================================================================
  D    White-throated sparrow  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================

Inserts between block 16 and 17 in window
B D                 Elephant 2bp
         Cape elephant shrew 9bp
B D                  Manatee 1908bp
            Cape golden mole 17bp
                    Aardvark 2bp
B D                Armadillo 1bp
  D             Mallard duck 2bp

Alignment block 17 of 93 in window, 76050306 - 76050307, 2 bps 
B D                     Human  c-----------a
B D                     Chimp  c-----------a
B D                   Gorilla  c-----------a
B D                 Orangutan  c-----------a
B D                    Gibbon  c-----------a
B D                    Rhesus  c-----------a
B D       Crab-eating macaque  c-----------a
B D                    Baboon  ------------a
B D              Green monkey  caaaaaaccaaaa
B D                  Marmoset  ------------a
B D           Squirrel monkey  c-----------a
           Chinese tree shrew  c-----------a
B D                  Squirrel  c-----------c
       Lesser Egyptian jerboa  c-----------c
                 Prairie vole  c-----------c
B D           Chinese hamster  c-----------c
               Golden hamster  c-----------c
B D                     Mouse  c-----------c
B D                       Rat  c-----------c
B D            Naked mole-rat  c-----------c
B D                Guinea pig  c-----------c
                   Chinchilla  c-----------c
             Brush-tailed rat  c-----------c
B D                      Pika  a-----------c
B D                       Pig  a-----------g
B D                    Alpaca  a-----------g
               Bactrian camel  a-----------g
B D                   Dolphin  a-----------a
                 Killer whale  a-----------a
             Tibetan antelope  g-----------a
B D                       Cow  a-----------a
B D                     Sheep  a-----------a
                Domestic goat  a-----------a
B D                     Horse  ------------c
B D          White rhinoceros  ------------a
B D                       Cat  ------------a
B D                       Dog  ------------a
B D                   Ferret   ------------a
B D                     Panda  ------------a
               Pacific walrus  ------------a
                 Weddell seal  ------------a
             Black flying-fox  a-----------a
B D                   Megabat  a-----------a
                Big brown bat  a-----------a
         David's myotis (bat)  a-----------a
B D                  Microbat  a-----------a
B D                  Hedgehog  c-----------a
              Star-nosed mole  a-----------a
  D              Mallard duck  c-----------a
  D           Green seaturtle  c-----------a
  D            Painted turtle  c-----------c
B D                    Tenrec  =============
B D                  Elephant  =============
         Cape elephant shrew  =============
B D                     Shrew  =============
B D                    Rabbit  =============
B D                 Armadillo  =============
B D                   Manatee  =============
B D                  Bushbaby  =============
            Cape golden mole  =============
      Yellowbelly pufferfish  =============
B D                      Fugu  =============
                    Aardvark  =============
B D               Stickleback  =============
         Pundamilia nyererei  =============
                 Zebra mbuna  =============
       Burton's mouthbreeder  =============
         Princess of Burundi  =============
B D                    Medaka  =============
B D                Coelacanth  =============
B D                    Turkey  =============
                 Spotted gar  =============
  D             Scarlet macaw  =============
  D                    Parrot  =============
B D                Budgerigar  =============
B D                   Wallaby  =============
  D    Spiny softshell turtle  =============
B D                    Lizard  =============
          Southern platyfish  =============
    Mexican tetra (cavefish)  =============
  D          Peregrine falcon  =============
B D                 Zebrafish  =============
  D               Rock pigeon  =============
B D              Nile tilapia  =============
B D                 Tetraodon  =============
B D                   Chicken  =============
B D              Atlantic cod  =============
B D                  Platypus  -------------
  D       Collared flycatcher  =============
  D  Chinese softshell turtle  =============
B D               Zebra finch  =============
  D              Saker falcon  =============
B D             X. tropicalis  =============
B D       Medium ground finch  =============
B D                   Opossum  =============
B D        American alligator  =============
  D    White-throated sparrow  =============
          Tibetan ground jay  =============
B D           Tasmanian devil  =============

Alignment block 18 of 93 in window, 76050308 - 76050315, 8 bps 
B D                     Human  aaaacgaa
B D                     Chimp  aaaacgaa
B D                   Gorilla  aaaacgaa
B D                 Orangutan  aaaacgaa
B D                    Gibbon  aaaacgaa
B D                    Rhesus  aaaccgaa
B D       Crab-eating macaque  aaaccgaa
B D                    Baboon  aaaccgaa
B D              Green monkey  aaaacgaa
B D                  Marmoset  acaacaaa
B D           Squirrel monkey  acaacaaa
           Chinese tree shrew  a-------
             Cape golden mole  agaaagaa
B D                 Armadillo  aaaaaaaa
B D                   Opossum  aaagtgaa
  D              Mallard duck  -aaaagtc
  D           Green seaturtle  -aaaagta
  D            Painted turtle  -aaaagta
B D                    Tenrec  ========
B D                  Hedgehog  --------
B D                Guinea pig  --------
B D                       Rat  --------
B D                     Mouse  --------
              Golden hamster  --------
B D           Chinese hamster  --------
                Prairie vole  --------
B D                  Elephant  ========
            Tibetan antelope  --------
         Cape elephant shrew  ========
B D                     Shrew  ========
        David's myotis (bat)  --------
B D                     Horse  --------
               Domestic goat  --------
B D                     Sheep  --------
B D                       Cow  --------
B D                    Alpaca  --------
             Star-nosed mole  --------
B D                  Squirrel  --------
B D                      Pika  --------
B D                    Rabbit  ========
B D                   Manatee  ========
                  Chinchilla  --------
      Lesser Egyptian jerboa  --------
B D          White rhinoceros  --------
            Brush-tailed rat  --------
              Pacific walrus  --------
B D                       Dog  --------
B D                       Cat  --------
B D                  Microbat  --------
B D                  Bushbaby  ========
               Big brown bat  --------
B D            Naked mole-rat  --------
                Killer whale  --------
              Bactrian camel  --------
B D                     Panda  --------
            Black flying-fox  --------
B D                   Ferret   --------
B D                   Dolphin  --------
                Weddell seal  --------
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
                    Aardvark  ========
B D               Stickleback  ========
         Pundamilia nyererei  ========
                 Zebra mbuna  ========
       Burton's mouthbreeder  ========
         Princess of Burundi  ========
B D                    Medaka  ========
B D                Coelacanth  ========
B D                    Turkey  ========
                 Spotted gar  ========
  D             Scarlet macaw  ========
  D                    Parrot  ========
B D                Budgerigar  ========
B D                   Wallaby  ========
  D    Spiny softshell turtle  ========
B D                    Lizard  ========
          Southern platyfish  ========
    Mexican tetra (cavefish)  ========
  D          Peregrine falcon  ========
B D                 Zebrafish  ========
  D               Rock pigeon  ========
B D              Nile tilapia  ========
B D                 Tetraodon  ========
B D                   Chicken  ========
B D              Atlantic cod  ========
B D                  Platypus  --------
  D       Collared flycatcher  ========
  D  Chinese softshell turtle  ========
B D               Zebra finch  ========
  D              Saker falcon  ========
B D             X. tropicalis  ========
B D       Medium ground finch  ========
B D        American alligator  ========
  D    White-throated sparrow  ========
          Tibetan ground jay  ========
B D                   Megabat  --------
B D                       Pig  --------
B D           Tasmanian devil  ========

Alignment block 19 of 93 in window, 76050316 - 76050332, 17 bps 
B D                     Human  a--cagtggccaagcgagc
B D                     Chimp  a--cagtggccaagagagc
B D                   Gorilla  a--cagtggccaagagagc
B D                 Orangutan  a--cagtggccaagagagc
B D                    Gibbon  a--cagcggccaagagagc
B D                    Rhesus  a--cagtggccaagagaat
B D       Crab-eating macaque  a--cagtggccaagagaac
B D                    Baboon  a--cagtggccaagagaac
B D              Green monkey  a--cagtggccaagagaac
B D                  Marmoset  acccagtggtcaagaaagc
B D           Squirrel monkey  agccagtggccaagagagc
B D                  Squirrel  ---cagtggctaaggcagt
       Lesser Egyptian jerboa  ---cgtgactac--agagt
                 Prairie vole  ---caaaggcta--atggt
B D           Chinese hamster  ---tgaaggctaagagagt
               Golden hamster  ---tcaaagctaagagagt
B D                     Mouse  ---caaggccca--gtgat
B D                       Rat  ---caaggccaa--gtgct
B D            Naked mole-rat  ---cagtggctaaggaagt
B D                Guinea pig  ---ctgcagctaaggaagg
                   Chinchilla  ---tggtggctaaggaagt
             Brush-tailed rat  ----agtggc-aaggaagt
B D                      Pika  ---catggttgg--atagt
B D                       Pig  ---cgggggctgcgag-tc
B D                    Alpaca  ---cagtggctagcag-cc
               Bactrian camel  ---cagtggatagcag-cc
B D                   Dolphin  ---cagtggctaagag-tc
                 Killer whale  ---cagtggctaagag-tc
             Tibetan antelope  ---cggtggctgagag-gc
B D                       Cow  ---cagtggctaagag-ac
B D                     Sheep  ---cagtggctaagag-tc
                Domestic goat  ---cggtggctaagag-tc
B D                     Horse  ---cagtgactaagag-tt
B D          White rhinoceros  ---cagtggctaagag-tg
B D                       Cat  ---ccatggctaagag-tc
B D                       Dog  ---ccatggctaagag-tc
B D                   Ferret   ---ctgtggctacgag-tc
B D                     Panda  ---ctatggctaagag-tc
               Pacific walrus  ---ccttggctaagag-tc
                 Weddell seal  ---ccttggctaagag-tc
             Black flying-fox  ---cagtggctaagag-tg
B D                   Megabat  ---caatggctaagag-tg
                Big brown bat  ---cagtggctgaaac-tc
         David's myotis (bat)  ---cagtggctgagag-tc
B D                  Microbat  ---cagtggctgagag-tc
B D                  Hedgehog  ---agacagcagtg-----
              Star-nosed mole  ---aaacggccaagag-tc
B D                  Elephant  --------actgagacagt
             Cape golden mole  agaatgtgtctaagaaaat
                     Aardvark  ----ggtgtgaaagagaat
B D                 Armadillo  aaaaagtgtctaagaaaa-
B D                   Opossum  c--cagaagttaagagaac
B D                  Platypus  --acagtggccaatcgggg
  D              Mallard duck  --acttttgccattaagca
  D           Green seaturtle  --actatggccatggtaga
  D            Painted turtle  --actatggccacagagaa
B D                    Tenrec  ===================
         Cape elephant shrew  ===================
B D                     Shrew  ===================
B D                    Rabbit  ===================
B D                   Manatee  ===================
          Chinese tree shrew  -------------------
B D                  Bushbaby  ===================
      Yellowbelly pufferfish  ===================
B D                      Fugu  ===================
B D               Stickleback  ===================
         Pundamilia nyererei  ===================
                 Zebra mbuna  ===================
       Burton's mouthbreeder  ===================
         Princess of Burundi  ===================
B D                    Medaka  ===================
B D                Coelacanth  ===================
B D                    Turkey  ===================
                 Spotted gar  ===================
  D             Scarlet macaw  ===================
  D                    Parrot  ===================
B D                Budgerigar  ===================
B D                   Wallaby  ===================
  D    Spiny softshell turtle  ===================
B D                    Lizard  ===================
          Southern platyfish  ===================
    Mexican tetra (cavefish)  ===================
  D          Peregrine falcon  ===================
B D                 Zebrafish  ===================
  D               Rock pigeon  ===================
B D              Nile tilapia  ===================
B D                 Tetraodon  ===================
B D                   Chicken  ===================
B D              Atlantic cod  ===================
  D       Collared flycatcher  ===================
  D  Chinese softshell turtle  ===================
B D               Zebra finch  ===================
  D              Saker falcon  ===================
B D             X. tropicalis  ===================
B D       Medium ground finch  ===================
B D        American alligator  ===================
  D    White-throated sparrow  ===================
          Tibetan ground jay  ===================
B D           Tasmanian devil  ===================

Inserts between block 19 and 20 in window
B D                 Elephant 1bp
            Cape golden mole 1bp
B D                 Platypus 17bp

Alignment block 20 of 93 in window, 76050333 - 76050341, 9 bps 
B D                     Human  a--gtgcactc
B D                     Chimp  a--gtgcactc
B D                   Gorilla  a--gtgcactc
B D                 Orangutan  a--gtgcattc
B D                    Gibbon  a--gtgcactc
B D                    Rhesus  a--gtgcactc
B D       Crab-eating macaque  a--gtgcactc
B D                    Baboon  a--gtgcactc
B D              Green monkey  a--gtgcactc
B D                  Marmoset  a--gtgcactg
B D           Squirrel monkey  a--gtgcactt
           Chinese tree shrew  -----gcactc
B D                  Squirrel  at-acgct--g
       Lesser Egyptian jerboa  a--acaca--g
                 Prairie vole  g--atgca--g
B D           Chinese hamster  g--acaaa--g
               Golden hamster  g--acaaa--g
B D                     Mouse  g--ac------
B D                       Rat  g--ac------
B D            Naked mole-rat  a--acccatgg
B D                Guinea pig  g--atgcac-g
                   Chinchilla  g--atgcacgg
             Brush-tailed rat  g--atgcgcgg
B D                      Pika  c--atgcacta
B D                       Pig  g--gtgccc--
B D                    Alpaca  a--aagccctc
               Bactrian camel  a--aagccctc
B D                   Dolphin  a--atgcac--
                 Killer whale  a--atgcac--
             Tibetan antelope  c--ctgctc--
B D                       Cow  c--ctgccc--
B D                     Sheep  c--ctgctc--
                Domestic goat  c--ctgctc--
B D                     Horse  a--atgcactc
B D          White rhinoceros  a--atgcactc
B D                       Cat  c--ctgcactc
B D                       Dog  t--gtgcactc
B D                   Ferret   t--atgcactc
B D                     Panda  t--gtgcactc
               Pacific walrus  t--atgcactc
                 Weddell seal  t--gtgcactc
             Black flying-fox  a--atgcactc
B D                   Megabat  a--atgcactc
                Big brown bat  a--atgcact-
         David's myotis (bat)  a--atgcattc
B D                  Microbat  a--atgcactc
B D                  Hedgehog  ----tgtgctc
              Star-nosed mole  a--ctgcgctc
B D                  Elephant  a--atgcactc
          Cape elephant shrew  a--atgcactt
             Cape golden mole  a--atgcattc
                     Aardvark  g--aaccgctc
B D                 Armadillo  a--gtgcagtc
B D                   Opossum  -atatgtacta
  D              Mallard duck  --agttagaca
  D           Green seaturtle  --tgtgggttt
  D            Painted turtle  --tgtgggttt
B D                    Tenrec  ===========
B D                     Shrew  ===========
B D                    Rabbit  ===========
B D                   Manatee  ===========
B D                  Bushbaby  ===========
      Yellowbelly pufferfish  ===========
B D                      Fugu  ===========
B D               Stickleback  ===========
         Pundamilia nyererei  ===========
                 Zebra mbuna  ===========
       Burton's mouthbreeder  ===========
         Princess of Burundi  ===========
B D                    Medaka  ===========
B D                Coelacanth  ===========
B D                    Turkey  ===========
                 Spotted gar  ===========
  D             Scarlet macaw  ===========
  D                    Parrot  ===========
B D                Budgerigar  ===========
B D                   Wallaby  ===========
  D    Spiny softshell turtle  ===========
B D                    Lizard  ===========
          Southern platyfish  ===========
    Mexican tetra (cavefish)  ===========
  D          Peregrine falcon  ===========
B D                 Zebrafish  ===========
  D               Rock pigeon  ===========
B D              Nile tilapia  ===========
B D                 Tetraodon  ===========
B D                   Chicken  ===========
B D              Atlantic cod  ===========
B D                  Platypus  ===========
  D       Collared flycatcher  ===========
  D  Chinese softshell turtle  ===========
B D               Zebra finch  ===========
  D              Saker falcon  ===========
B D             X. tropicalis  ===========
B D       Medium ground finch  ===========
B D        American alligator  ===========
  D    White-throated sparrow  ===========
          Tibetan ground jay  ===========
B D           Tasmanian devil  ===========

Inserts between block 20 and 21 in window
B D                  Ferret  1bp
  D             Mallard duck 3bp

Alignment block 21 of 93 in window, 76050342 - 76050368, 27 bps 
B D                     Human  aga-gcactggg-gt---------------------cc---------------acct---g--------a
B D                     Chimp  aga-gcactggg-gt---------------------cc---------------acct---g--------a
B D                   Gorilla  aga-gcactggg-gt---------------------cc---------------acct---g--------a
B D                 Orangutan  aga-gcactggg-gt---------------------cc---------------acct---g--------a
B D                    Gibbon  aga-gcactggg-gt---------------------cc---------------acct---g--------a
B D                    Rhesus  aga-gcactggg-gt---------------------cc---------------acct---g--------a
B D       Crab-eating macaque  aga-gcactggg-gt---------------------cc---------------acct---g--------a
B D                    Baboon  aga-gcactggg-gt---------------------cc---------------acct---g--------a
B D              Green monkey  aga-gtactggg-gt---------------------cc---------------acct---g--------a
B D                  Marmoset  aga-gcaccggg-gt---------------------ct---------------acct---g--------a
B D           Squirrel monkey  aga-gcactggg-gt---------------------cc---------------acct---g--------a
           Chinese tree shrew  aga-cctctggg-gca--------------------cc---------------acca---g--------a
B D                  Squirrel  aaatct-ctggg-aa---------------------cc---------------ccct---a--------a
       Lesser Egyptian jerboa  aga-ccactgtg-ac---------------------ca--------------cacaa---g--------a
                 Prairie vole  gga-cc-ctg-g-gc---------------------ca---------------ccct---g--------a
B D           Chinese hamster  gga-cc-ctgtg-gc---------------------ca--------------cccct---g--------a
               Golden hamster  gga-cc-ctggg-gc---------------------ca--------------cccct---g--------a
B D                     Mouse  ----cc-ctggg-ag---------------------ca---------------cccc---g--------a
B D                       Rat  ----cc-ctggg-ag---------------------ca---------------ccct---g-------ca
B D            Naked mole-rat  aga-ccactggg-ac---------------------cc--------------cagct---a--------g
B D                Guinea pig  aga-cctctggg--c---------------------cc--------------caggt---g--------g
                   Chinchilla  aga-ccataggg-tc---------------------cc--------------cagct---g--------g
             Brush-tailed rat  aga-ccacaggg-gc---------------------cc--------------cagct---g--------g
B D                      Pika  agc-cc-atggg-cc---------------------ccct------------cgcct---g--------g
B D                       Pig  --------------------------------------------------------c---g--------a
B D                    Alpaca  aga-ccactggg-ac---------------------cc--------------cacat---g--------a
               Bactrian camel  aga-ccactggg-ac---------------------cc--------------tacat---g--------a
B D                   Dolphin  --------------------------------------------------------t---g--------a
                 Killer whale  --------------------------------------------------------t---g--------a
             Tibetan antelope  --------------------------------------------------------t---g--------g
B D                       Cow  --------------------------------------------------------t---g--------g
B D                     Sheep  --------------------------------------------------------c---g--------g
                Domestic goat  --------------------------------------------------------t---g--------g
B D                     Horse  aga-ccactggg-ac---------------------cc--------------cacct---g--------a
B D          White rhinoceros  aga-ccactggg-ac---------------------cc--------------caccc---g--------a
B D                       Cat  aga-ccagtgga-ccccct---gccccactc-----cc--------------acact---g--------a
B D                       Dog  aga-ccact--g-cctccctcccccttgaccagcctcc--------------acccc---g--------a
B D                   Ferret   aga-ccact--g-cccgcccatccccccatc-----cc--------------caccc---g---------
B D                     Panda  aga-ccactggg-cccgcctc-ccccccacc-----cc--------------gcccc---gccctgccaa
               Pacific walrus  aga-ccactggg-cccac----ccccccgcc-----cc--------------gcccc---g--------a
                 Weddell seal  aga-ccactggg-cccaccccacccccaccc-----cc--------------gcccc---a--------a
             Black flying-fox  gga-ccacgggg-at---------------------cc--------------caccc---g--------g
B D                   Megabat  gga-ccacgggg-at---------------------cc--------------caccc---g--------g
                Big brown bat  -gt-cccccagg-ac---------------------cc--------------cacct---g--------g
         David's myotis (bat)  agt-cccccggg-ac---------------------cc--------------cacct---g--------g
B D                  Microbat  agt-cccccggg-ac---------------------cc--------------cacct---g--------g
B D                  Hedgehog  aga-ccactggg-ac---------------------cc--------------cacct---g--------a
              Star-nosed mole  ggc-ctgtggg--------------------------------------------cc---a--------a
B D                  Elephant  --a-ccactggg-ac---------------------ct--------------caccc---a--------a
          Cape elephant shrew  aga-ccactggg-ac---------------------cc--------------cgctg---g--------a
             Cape golden mole  agt-ccactgtg-ac---------------------ct--------------cacct---g--------g
                     Aardvark  caa-gcactggg-gg---------------------cc--------------caccg---g--------a
B D                 Armadillo  aga-cc-ccggg-ac---------------------cc--------------cacct---g--------a
B D                   Opossum  gga-caaatgaatat---------------------tc--------------tagct---g--------a
B D                  Platypus  agc-tccatgtg-gt---------------------gt--------------ggcgg---g--------g
  D              Mallard duck  --------------------------------------acag----------aacgtcccc--------c
  D           Green seaturtle  ----------------------------------------------------aactt---c--------a
  D            Painted turtle  ----------------------------------------------------aacgt---c--------a
  D    Spiny softshell turtle  --------------------------------------atagctgtgggtttaactt---t--------a
B D                    Tenrec  ======================================================================
B D                     Shrew  ======================================================================
B D                    Rabbit  ======================================================================
B D                   Manatee  ======================================================================
B D                  Bushbaby  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D               Stickleback  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                    Turkey  ======================================================================
                 Spotted gar  ======================================================================
  D             Scarlet macaw  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
B D                   Wallaby  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
  D          Peregrine falcon  ======================================================================
B D                 Zebrafish  ======================================================================
  D               Rock pigeon  ======================================================================
B D              Nile tilapia  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D               Zebra finch  ======================================================================
  D              Saker falcon  ======================================================================
B D             X. tropicalis  ======================================================================
B D       Medium ground finch  ======================================================================
B D        American alligator  ======================================================================
  D    White-throated sparrow  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  ----------gaa-ggg
                        Chimp  ----------gaa-ggg
                      Gorilla  ----------gaa-ggg
                    Orangutan  ----------gac-ggg
                       Gibbon  ----------gaa-ggg
                       Rhesus  ----------gaa-ggg
          Crab-eating macaque  ----------gaa-ggg
                       Baboon  ----------gaa-ggg
                 Green monkey  ----------gaa-ggg
                     Marmoset  ----------gaagggg
              Squirrel monkey  ----------gaa-ggg
           Chinese tree shrew  ----------gaa-cgc
                     Squirrel  ----------gga-cag
       Lesser Egyptian jerboa  ----------gaa-gca
                 Prairie vole  ----------gca-cag
              Chinese hamster  ----------gga-cag
               Golden hamster  gcacccgtggggc-cag
                        Mouse  ----------gga-cag
                          Rat  ----------gga-cag
               Naked mole-rat  ----------gga-cgg
                   Guinea pig  ----------gaa--gg
                   Chinchilla  ----------gaa-cat
             Brush-tailed rat  ----------gaa-cgg
                         Pika  ----------ggc-cag
                          Pig  ----------gaa-ggc
                       Alpaca  ----------gaa-tga
               Bactrian camel  ----------gaa-tga
                      Dolphin  ----------gaa-tgc
                 Killer whale  ----------gaa-tgc
             Tibetan antelope  ----------gaa-tgt
                          Cow  ----------gaa-cga
                        Sheep  ----------gaa-tgt
                Domestic goat  ----------gaa-tgt
                        Horse  ----------gaa-gga
             White rhinoceros  ----------gaa-tga
                          Cat  ----------gaa-tga
                          Dog  ----------gaa-tga
                      Ferret   -----------aa-caa
                        Panda  ----------gaa-caa
               Pacific walrus  ----------gaa-caa
                 Weddell seal  ----------gaa-caa
             Black flying-fox  ----------gaa-tga
                      Megabat  ----------gaa-tga
                Big brown bat  ----------gaa-tgg
         David's myotis (bat)  ----------gca-cgg
                     Microbat  ----------gca-tgg
                     Hedgehog  ----------gaa-tgg
              Star-nosed mole  ----------gaa-cca
                     Elephant  ----------gaa-cag
          Cape elephant shrew  ----------gaa-cag
             Cape golden mole  ----------gaa-tgg
                     Aardvark  ----------gaa-cag
                    Armadillo  ----------gaa-tgg
                      Opossum  --------aggaa-tat
                     Platypus  ----------gaa-agg
                 Mallard duck  ----------caa-aaa
              Green seaturtle  ----------caa-gag
               Painted turtle  ----------caa-gag
       Spiny softshell turtle  ----------caa-gag
                       Tenrec  =================
                        Shrew  =================
                       Rabbit  =================
                      Manatee  =================
                     Bushbaby  =================
       Yellowbelly pufferfish  =================
                         Fugu  =================
                  Stickleback  =================
          Pundamilia nyererei  =================
                  Zebra mbuna  =================
        Burton's mouthbreeder  =================
          Princess of Burundi  =================
                       Medaka  =================
                   Coelacanth  =================
                       Turkey  =================
                  Spotted gar  =================
                Scarlet macaw  =================
                       Parrot  =================
                   Budgerigar  =================
                      Wallaby  =================
                       Lizard  =================
           Southern platyfish  =================
     Mexican tetra (cavefish)  =================
             Peregrine falcon  =================
                    Zebrafish  =================
                  Rock pigeon  =================
                 Nile tilapia  =================
                    Tetraodon  =================
                      Chicken  =================
                 Atlantic cod  =================
          Collared flycatcher  =================
     Chinese softshell turtle  =================
                  Zebra finch  =================
                 Saker falcon  =================
                X. tropicalis  =================
          Medium ground finch  =================
           American alligator  =================
       White-throated sparrow  =================
           Tibetan ground jay  =================
              Tasmanian devil  =================

Inserts between block 21 and 22 in window
  D          Green seaturtle 2bp
  D           Painted turtle 2bp
  D   Spiny softshell turtle 2bp

Alignment block 22 of 93 in window, 76050369 - 76050371, 3 bps 
B D                     Human  g--ac-
B D                     Chimp  g--ac-
B D                   Gorilla  g--ac-
B D                 Orangutan  g--ac-
B D                    Gibbon  g--ac-
B D                    Rhesus  g--ac-
B D       Crab-eating macaque  g--ac-
B D                    Baboon  g--ac-
B D              Green monkey  g--ac-
B D                  Marmoset  g--tc-
B D           Squirrel monkey  g--tc-
           Chinese tree shrew  g-----
B D                  Squirrel  g-----
       Lesser Egyptian jerboa  g-----
                 Prairie vole  g-----
B D           Chinese hamster  g-----
               Golden hamster  g-----
B D                     Mouse  c-----
B D                       Rat  c-----
B D            Naked mole-rat  g-----
B D                Guinea pig  g-----
                   Chinchilla  g-----
             Brush-tailed rat  g-----
B D                      Pika  gac---
B D                       Pig  g--ac-
B D                    Alpaca  g--ac-
               Bactrian camel  g--ac-
B D                   Dolphin  g--ac-
                 Killer whale  g--ac-
             Tibetan antelope  g--ac-
B D                       Cow  g--ac-
B D                     Sheep  g--ac-
                Domestic goat  g--ac-
B D                     Horse  g--ac-
B D          White rhinoceros  g--ac-
B D                       Cat  g--ac-
B D                       Dog  g--ac-
B D                   Ferret   g--gc-
B D                     Panda  g-----
               Pacific walrus  g--ac-
                 Weddell seal  g--ac-
             Black flying-fox  c--ac-
B D                   Megabat  c--ac-
                Big brown bat  g--cc-
         David's myotis (bat)  g--cc-
B D                  Microbat  g--cc-
B D                  Hedgehog  c--gt-
              Star-nosed mole  c--ac-
B D                  Elephant  g--ac-
          Cape elephant shrew  g--ac-
             Cape golden mole  a--ac-
                     Aardvark  g--at-
B D                 Armadillo  g--ac-
B D                  Platypus  g--a--
B D               Zebra finch  ---gtc
           Tibetan ground jay  ---gcc
  D           Green seaturtle  ---gct
  D            Painted turtle  ---cct
  D    Spiny softshell turtle  ---tct
B D                    Tenrec  ======
B D                     Shrew  ======
B D                    Rabbit  ======
B D                   Manatee  ======
B D                  Bushbaby  ======
      Yellowbelly pufferfish  ======
B D                      Fugu  ======
B D               Stickleback  ======
         Pundamilia nyererei  ======
                 Zebra mbuna  ======
       Burton's mouthbreeder  ======
         Princess of Burundi  ======
B D                    Medaka  ======
B D                Coelacanth  ======
B D                    Turkey  ======
                 Spotted gar  ======
  D              Mallard duck  ------
  D             Scarlet macaw  ======
  D                    Parrot  ======
B D                Budgerigar  ======
B D                   Wallaby  ======
B D                    Lizard  ======
          Southern platyfish  ======
    Mexican tetra (cavefish)  ======
  D          Peregrine falcon  ======
B D                 Zebrafish  ======
  D               Rock pigeon  ======
B D              Nile tilapia  ======
B D                 Tetraodon  ======
B D                   Chicken  ======
B D              Atlantic cod  ======
  D       Collared flycatcher  ======
  D  Chinese softshell turtle  ======
  D              Saker falcon  ======
B D             X. tropicalis  ======
B D       Medium ground finch  ======
B D                   Opossum  ------
B D        American alligator  ======
  D    White-throated sparrow  ======
B D           Tasmanian devil  ======

Inserts between block 22 and 23 in window
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 2bp
B D                      Cow 2bp
B D                    Sheep 2bp
               Domestic goat 2bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 2bp
B D                  Ferret  2bp
B D                    Panda 2bp
              Pacific walrus 2bp
                Weddell seal 2bp
            Black flying-fox 2bp
B D                  Megabat 2bp
               Big brown bat 4bp
        David's myotis (bat) 5bp
B D                 Microbat 5bp
B D                 Hedgehog 2bp
             Star-nosed mole 2bp
B D                 Elephant 2bp
         Cape elephant shrew 7bp
            Cape golden mole 2bp
                    Aardvark 2bp
B D                Armadillo 2bp
B D                 Platypus 9bp

Alignment block 23 of 93 in window, 76050372 - 76050373, 2 bps 
B D                     Human  ----------a--------c
B D                     Chimp  ----------a--------c
B D                   Gorilla  ----------a--------c
B D                 Orangutan  ----------a--------c
B D                    Gibbon  ----------a--------c
B D                    Rhesus  ----------a--------c
B D       Crab-eating macaque  ----------a--------c
B D                    Baboon  ----------a--------c
B D              Green monkey  ----------a--------c
B D                  Marmoset  ----------a--------c
B D           Squirrel monkey  ----------a--------c
           Chinese tree shrew  ----------a--------c
B D                  Squirrel  ----------a--------c
       Lesser Egyptian jerboa  ----------a--------c
                 Prairie vole  ----------a--------c
B D           Chinese hamster  ----------g--------c
               Golden hamster  ----------g--------c
B D                     Mouse  ----------t--------c
B D                       Rat  ----------a--------c
B D            Naked mole-rat  ----------a--------c
B D                Guinea pig  ----------g--------c
                   Chinchilla  ----------g--------c
             Brush-tailed rat  ----------g--------c
B D                    Rabbit  ----------a--------c
B D                      Pika  ----------a--------c
B D                       Pig  ----------a--------c
B D                    Alpaca  ----------a--------c
               Bactrian camel  ----------a--------c
B D                   Dolphin  ----------a--------c
                 Killer whale  ----------a--------c
             Tibetan antelope  ----------a--------c
B D                       Cow  ----------a--------c
B D                     Sheep  ----------a--------c
                Domestic goat  ----------a--------c
B D                     Horse  ----------g--------c
B D          White rhinoceros  ----------a--------c
B D                       Cat  ----------a--------c
B D                       Dog  ----------a--------c
B D                   Ferret   ----------a--------c
B D                     Panda  ----------a--------c
               Pacific walrus  ----------a--------c
                 Weddell seal  ----------a--------c
             Black flying-fox  ----------a--------c
B D                   Megabat  ----------a--------c
                Big brown bat  ----------g--------g
         David's myotis (bat)  ----------g--------g
B D                  Microbat  ----------g--------g
B D                  Hedgehog  ----------cgtctacagg
              Star-nosed mole  ----------c--------c
B D                  Elephant  ----------a--------c
          Cape elephant shrew  ----------c--------c
             Cape golden mole  ----------a--------c
                     Aardvark  ----------a--------c
B D                 Armadillo  ----------a--------c
B D                   Opossum  ----------a--------t
B D                  Platypus  ----------a--------c
B D               Zebra finch  ccaaggaaaca--------c
           Tibetan ground jay  ccaaggaaaca--------t
  D              Mallard duck  ----------a--------c
  D           Green seaturtle  aggagatgaaa--------t
  D            Painted turtle  agaagatgaaa--------t
  D    Spiny softshell turtle  acaagattaaa--------t
B D                    Tenrec  ====================
B D                     Shrew  ====================
B D                   Manatee  ====================
B D                  Bushbaby  ====================
      Yellowbelly pufferfish  ====================
B D                      Fugu  ====================
B D               Stickleback  ====================
         Pundamilia nyererei  ====================
                 Zebra mbuna  ====================
       Burton's mouthbreeder  ====================
         Princess of Burundi  ====================
B D                    Medaka  ====================
B D                Coelacanth  ====================
B D                    Turkey  ====================
                 Spotted gar  ====================
  D             Scarlet macaw  ====================
  D                    Parrot  ====================
B D                Budgerigar  ====================
B D                   Wallaby  ====================
B D                    Lizard  ====================
          Southern platyfish  ====================
    Mexican tetra (cavefish)  ====================
  D          Peregrine falcon  ====================
B D                 Zebrafish  ====================
  D               Rock pigeon  ====================
B D              Nile tilapia  ====================
B D                 Tetraodon  ====================
B D                   Chicken  ====================
B D              Atlantic cod  ====================
  D       Collared flycatcher  ====================
  D  Chinese softshell turtle  ====================
  D              Saker falcon  ====================
B D             X. tropicalis  ====================
B D       Medium ground finch  ====================
B D        American alligator  ====================
  D    White-throated sparrow  ====================
B D           Tasmanian devil  ====================

Alignment block 24 of 93 in window, 76050374 - 76050374, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
           Chinese tree shrew  a
B D                  Squirrel  a
       Lesser Egyptian jerboa  a
                 Prairie vole  a
B D           Chinese hamster  a
               Golden hamster  a
B D                     Mouse  a
B D                       Rat  a
B D            Naked mole-rat  a
B D                Guinea pig  a
                   Chinchilla  a
             Brush-tailed rat  a
B D                    Rabbit  a
B D                      Pika  a
B D                       Pig  a
B D                    Alpaca  a
               Bactrian camel  a
B D                   Dolphin  a
                 Killer whale  a
             Tibetan antelope  a
B D                       Cow  a
B D                     Sheep  a
                Domestic goat  a
B D                     Horse  a
B D          White rhinoceros  a
B D                       Cat  a
B D                       Dog  a
B D                   Ferret   a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  a
         David's myotis (bat)  a
B D                  Microbat  a
B D                  Hedgehog  a
              Star-nosed mole  g
B D                  Elephant  a
          Cape elephant shrew  a
             Cape golden mole  a
                     Aardvark  g
B D                 Armadillo  a
B D                   Opossum  a
B D                  Platypus  a
B D               Zebra finch  g
           Tibetan ground jay  g
  D              Mallard duck  a
  D           Green seaturtle  g
  D            Painted turtle  g
  D    Spiny softshell turtle  g
B D              Atlantic cod  a
B D                    Tenrec  =
B D                     Shrew  =
B D                   Manatee  =
B D                  Bushbaby  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  =
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
B D                 Tetraodon  =
B D                   Chicken  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
  D              Saker falcon  =
B D             X. tropicalis  =
B D       Medium ground finch  =
B D        American alligator  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =

Alignment block 25 of 93 in window, 76050375 - 76050378, 4 bps 
B D                     Human  g--gc-t
B D                     Chimp  g--gc-t
B D                   Gorilla  g--gc-t
B D                 Orangutan  a--gc-t
B D                    Gibbon  g--gc-t
B D                    Rhesus  g--gc-t
B D       Crab-eating macaque  g--gc-t
B D                    Baboon  g--gc-t
B D              Green monkey  g--gc-t
B D                  Marmoset  g--gc-t
B D           Squirrel monkey  g--gc-t
           Chinese tree shrew  g--ac-t
B D                  Squirrel  g--at-t
       Lesser Egyptian jerboa  g--ac-t
                 Prairie vole  g--a--t
B D           Chinese hamster  g--at-t
               Golden hamster  g--ac-t
B D                     Mouse  g--ac-t
B D                       Rat  g--acgt
B D            Naked mole-rat  g--gc-c
B D                Guinea pig  g--gt-c
                   Chinchilla  g--gc-c
             Brush-tailed rat  g--tg-a
B D                    Rabbit  g--cc-c
B D                      Pika  ----c-t
B D                       Pig  g--a--c
B D                    Alpaca  g--ac-t
               Bactrian camel  g--ac-t
B D                   Dolphin  g--ac-t
                 Killer whale  g--ac-t
             Tibetan antelope  g--ag-c
B D                       Cow  g--ac-c
B D                     Sheep  g--ag-c
                Domestic goat  g--ag-c
B D                     Horse  g--ac-t
B D          White rhinoceros  g--ac-t
B D                       Cat  g--ac-t
B D                       Dog  a--ac-t
B D                   Ferret   g--ac-t
B D                     Panda  g--ac-t
               Pacific walrus  g--ac-t
                 Weddell seal  g--ac-t
             Black flying-fox  g--ac-c
B D                   Megabat  g--ac-c
                Big brown bat  g--gc-g
         David's myotis (bat)  g--ga-g
B D                  Microbat  g------
B D                  Hedgehog  g--ac-c
              Star-nosed mole  g--ac-c
B D                  Elephant  g--at-g
          Cape elephant shrew  a--at-g
             Cape golden mole  a--ag-g
                     Aardvark  g--ag-a
B D                 Armadillo  g--ac-t
B D                   Opossum  gtaag-t
B D                  Platypus  g--gt-c
B D               Zebra finch  g--tg-t
           Tibetan ground jay  g--tg-t
  D              Mallard duck  c--ta-c
  D           Green seaturtle  c--ta-t
  D            Painted turtle  c--ta-t
  D    Spiny softshell turtle  c--aa-t
B D               Stickleback  g--ac-t
B D              Atlantic cod  g--gc-t
B D                    Tenrec  =======
B D                     Shrew  =======
B D                   Manatee  =======
B D                  Bushbaby  =======
      Yellowbelly pufferfish  =======
B D                      Fugu  =======
         Pundamilia nyererei  =======
                 Zebra mbuna  =======
       Burton's mouthbreeder  =======
         Princess of Burundi  =======
B D                    Medaka  =======
B D                Coelacanth  =======
B D                    Turkey  =======
                 Spotted gar  =======
  D             Scarlet macaw  =======
  D                    Parrot  =======
B D                Budgerigar  =======
B D                   Wallaby  =======
B D                    Lizard  =======
          Southern platyfish  =======
    Mexican tetra (cavefish)  =======
  D          Peregrine falcon  =======
B D                 Zebrafish  =======
  D               Rock pigeon  =======
B D              Nile tilapia  =======
B D                 Tetraodon  =======
B D                   Chicken  =======
  D       Collared flycatcher  =======
  D  Chinese softshell turtle  =======
  D              Saker falcon  =======
B D             X. tropicalis  =======
B D       Medium ground finch  =======
B D        American alligator  =======
  D    White-throated sparrow  =======
B D           Tasmanian devil  =======

Inserts between block 25 and 26 in window
B D                 Hedgehog 6bp
B D              Zebra finch 11bp
          Tibetan ground jay 11bp
  D             Mallard duck 8bp
  D          Green seaturtle 1bp
  D           Painted turtle 1bp
B D              Stickleback 5bp
B D             Atlantic cod 6bp

Alignment block 26 of 93 in window, 76050379 - 76050388, 10 bps 
B D                     Human  gacc-----t------ggac--c
B D                     Chimp  gacc-----t------ggac--c
B D                   Gorilla  gacc-----t------ggac--c
B D                 Orangutan  gacc-----t------ggacttc
B D                    Gibbon  gacc-----t------ggacccc
B D                    Rhesus  gacc-----t------ggacccc
B D       Crab-eating macaque  gacc-----t------ggacccc
B D                    Baboon  gacc-----t------ggacccc
B D              Green monkey  gacc-----t------ggacccc
B D                  Marmoset  gagg-----t------ggac-cc
B D           Squirrel monkey  gagc-----t------ggac-cc
           Chinese tree shrew  gagg-----a------ggaccca
B D                  Squirrel  gaga-----g------gaccccg
       Lesser Egyptian jerboa  gagg-----a------ggacccg
                 Prairie vole  gggg-----a------ggaggca
B D           Chinese hamster  gggg-----a------ggatcca
               Golden hamster  aggg-----c------ggatcca
B D                     Mouse  gggg-----g-------------
B D                       Rat  ggga-----ggacggaggaccca
B D            Naked mole-rat  aagg-----a------ggaccca
B D                Guinea pig  aggtccaaga------gtggcta
                   Chinchilla  cggc-----a------ggggccg
             Brush-tailed rat  agg------a------ggggccg
B D                    Rabbit  gagc-----a------ggcccct
B D                      Pika  gcac-----a------gggcc--
B D                       Pig  gagg-----a------ggagc--
B D                    Alpaca  gagg-----a------ggacc--
               Bactrian camel  gagg-----a------ggacc--
B D                   Dolphin  gaag-----a------ggacc--
                 Killer whale  gaag-----a------ggacc--
             Tibetan antelope  agcg-----a------ggacg--
B D                       Cow  aaag-----a------ggacc--
B D                     Sheep  agag-----a------agacc--
                Domestic goat  agag-----a------ggacc--
B D                     Horse  gagg-----a------gggcc--
B D          White rhinoceros  gagg-----a------ggacc--
B D                       Cat  gaga-----a------ggacc--
B D                       Dog  gaga-----a------ggacc--
B D                   Ferret   gag------a------ggacc--
B D                     Panda  gaga-----a------ggacc--
               Pacific walrus  gaga-----a------ggagc--
                 Weddell seal  gaga-----a------ggagc--
             Black flying-fox  c--------a------ggacc--
B D                   Megabat  c--------a------ggacc--
                Big brown bat  g--------a------gga-c--
         David's myotis (bat)  g--------a------ggacc--
B D                  Elephant  aagg-----g------ggat---
          Cape elephant shrew  tgag-------------------
             Cape golden mole  gacc-----c------acaa---
                     Aardvark  aggg-----g------gacc---
B D                 Armadillo  gagg-----a------ggtc---
B D                   Opossum  catg-----t------gga----
B D                  Platypus  t----------------------
B D                      Fugu  -----------gacccggatt--
       Yellowbelly pufferfish  -----------gacccggatt--
B D               Stickleback  -----------gtcccacccc--
B D              Atlantic cod  -----------tgcccagcct--
B D                    Tenrec  =======================
B D                  Hedgehog  =======================
B D                     Shrew  =======================
             Star-nosed mole  -----------------------
B D                   Manatee  =======================
B D                  Microbat  -----------------------
B D                  Bushbaby  =======================
         Pundamilia nyererei  =======================
                 Zebra mbuna  =======================
       Burton's mouthbreeder  =======================
         Princess of Burundi  =======================
B D                    Medaka  =======================
B D                Coelacanth  =======================
B D                    Turkey  =======================
                 Spotted gar  =======================
  D              Mallard duck  =======================
  D             Scarlet macaw  =======================
  D                    Parrot  =======================
B D                Budgerigar  =======================
B D                   Wallaby  =======================
  D    Spiny softshell turtle  -----------------------
B D                    Lizard  =======================
          Southern platyfish  =======================
    Mexican tetra (cavefish)  =======================
  D          Peregrine falcon  =======================
B D                 Zebrafish  =======================
  D               Rock pigeon  =======================
B D              Nile tilapia  =======================
  D            Painted turtle  =======================
B D                 Tetraodon  =======================
B D                   Chicken  =======================
  D       Collared flycatcher  =======================
  D  Chinese softshell turtle  =======================
B D               Zebra finch  =======================
  D              Saker falcon  =======================
B D             X. tropicalis  =======================
  D           Green seaturtle  =======================
B D       Medium ground finch  =======================
B D        American alligator  =======================
  D    White-throated sparrow  =======================
          Tibetan ground jay  =======================
B D           Tasmanian devil  =======================

Inserts between block 26 and 27 in window
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 2bp
B D                      Cow 2bp
B D                    Sheep 2bp
               Domestic goat 2bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 2bp
B D                  Ferret  2bp
B D                    Panda 2bp
              Pacific walrus 2bp
                Weddell seal 2bp
            Black flying-fox 2bp
B D                  Megabat 2bp
               Big brown bat 2bp
        David's myotis (bat) 2bp
B D                  Opossum 5bp
B D                 Platypus 8bp

Alignment block 27 of 93 in window, 76050389 - 76050399, 11 bps 
B D                     Human  cgc-ccag-----a-----gca-----
B D                     Chimp  cgc-ccag-----a-----gca-----
B D                   Gorilla  tgc-ccag-----a-----gca-----
B D                 Orangutan  cgc-ccag-----a-----gca-----
B D                    Gibbon  cac-ccag-----a-----gca-----
B D                    Rhesus  tgc-ccag-----a-----gca-----
B D       Crab-eating macaque  tgc-ccag-----a-----gca-----
B D                    Baboon  tgc-ccag-----a-----gca-----
B D              Green monkey  tgc-ccag-----a-----gca-----
B D                  Marmoset  tgc-ccag-----a-----gca-----
B D           Squirrel monkey  tgc-tcag-----a-----gca-----
           Chinese tree shrew  agc-ccag-----a-----gtg-----
B D                  Squirrel  -gcggcag-----g-----tca-----
       Lesser Egyptian jerboa  agc-tcaa-----g-----gta-----
                 Prairie vole  -gc-acca-----g-----gca-----
B D                     Mouse  ------ag-----g-----aca-----
B D                       Rat  -gc-ccag-----g-----gca-----
B D            Naked mole-rat  tgc-ccat-----g-----ccc-----
B D                Guinea pig  cat-cctg-----c-----gcc-----
                   Chinchilla  agc-ccag-----g-----gcc-----
             Brush-tailed rat  ag--ccag-----g-----gcc-----
B D                    Rabbit  ggc-ctgg-----a-----gcc-----
B D                       Pig  ggc-ccag-----a-----gca-----
B D                    Alpaca  agc-ccag-----a-----g-a-----
               Bactrian camel  agc-ccag-----a-----gca-----
B D                   Dolphin  agc-ccag-----a-----aca-----
                 Killer whale  agc-ccag-----a-----aca-----
             Tibetan antelope  a--------------------------
B D                       Cow  a-c-tcag-----a-----gca-----
B D                     Sheep  agc-tcag-----a-----gca-----
                Domestic goat  agc-tcag-----a-----gca-----
B D                     Horse  agc-ccag-----a-----gca-----
B D          White rhinoceros  agc-ccag-----a-----gca-----
B D                       Cat  agc-cccg-----a-----gca-----
B D                       Dog  agc-ccag-----a-----gca-----
B D                   Ferret   agc-ccag-----a-----gca-----
B D                     Panda  agc-ctgg-----a-----gca-----
               Pacific walrus  agc-cagg-----a-----gca-----
                 Weddell seal  agc-cagg-----a-----gca-----
             Black flying-fox  agc-ccag-----a-----gca-----
B D                   Megabat  agc-ccag-----a-----gca-----
                Big brown bat  agc-ccag-----a-----gca-----
         David's myotis (bat)  agg-ccag-----a-----gca-----
B D                  Microbat  -------g-----a-----gca-----
B D                  Hedgehog  -----tac-----a-----gta-----
B D                     Shrew  -----cca-----g-----atg-----
              Star-nosed mole  -----tcc-----g-----ctg-----
B D                  Elephant  --c-ccag-----c------ct-----
          Cape elephant shrew  ---------------------t-----
             Cape golden mole  --c-ccag-----a-----gac-----
                     Aardvark  --c-ccag-----g-------a-----
B D                 Armadillo  --c-ccag-----cccagagaa-----
B D                   Opossum  agg-tcaa-----t-----aca-----
B D                  Platypus  ggt-ctga-----a-----gcc-----
  D           Green seaturtle  --------------------ca-----
  D            Painted turtle  --------------------ca-----
  D    Spiny softshell turtle  ---------------------c-----
B D                      Fugu  ------tg-----a-----tcaaagac
       Yellowbelly pufferfish  ------tg-----a-----tcaaagac
B D               Stickleback  ------tacaacta-----tcaac---
B D              Atlantic cod  ------gg-----a-----gcc-----
B D                    Tenrec  ===========================
              Golden hamster  ---------------------------
B D           Chinese hamster  ---------------------------
B D                      Pika  ---------------------------
B D                   Manatee  ===========================
B D                  Bushbaby  ===========================
         Pundamilia nyererei  ===========================
                 Zebra mbuna  ===========================
       Burton's mouthbreeder  ===========================
         Princess of Burundi  ===========================
B D                    Medaka  ===========================
B D                Coelacanth  ===========================
B D                    Turkey  ===========================
                 Spotted gar  ===========================
  D              Mallard duck  ===========================
  D             Scarlet macaw  ===========================
  D                    Parrot  ===========================
B D                Budgerigar  ===========================
B D                   Wallaby  ===========================
B D                    Lizard  ===========================
          Southern platyfish  ===========================
    Mexican tetra (cavefish)  ===========================
  D          Peregrine falcon  ===========================
B D                 Zebrafish  ===========================
  D               Rock pigeon  ===========================
B D              Nile tilapia  ===========================
B D                 Tetraodon  ===========================
B D                   Chicken  ===========================
  D       Collared flycatcher  ===========================
  D  Chinese softshell turtle  ===========================
B D               Zebra finch  ===========================
  D              Saker falcon  ===========================
B D             X. tropicalis  ===========================
B D       Medium ground finch  ===========================
B D        American alligator  ===========================
  D    White-throated sparrow  ===========================
          Tibetan ground jay  ===========================
B D           Tasmanian devil  ===========================

Inserts between block 27 and 28 in window
  D          Green seaturtle 12bp
  D           Painted turtle 12bp
  D   Spiny softshell turtle 12bp

Alignment block 28 of 93 in window, 76050400 - 76050405, 6 bps 
B D                     Human  ag--------------------------a--acc
B D                     Chimp  ag--------------------------a--acc
B D                   Gorilla  ag--------------------------g--gcc
B D                 Orangutan  ag--------------------------g--gcc
B D                    Gibbon  ag--------------------------g--gcc
B D                    Rhesus  ag--------------------------g--gcc
B D       Crab-eating macaque  ag--------------------------g--gcc
B D                    Baboon  ag--------------------------g--gcc
B D              Green monkey  ag--------------------------g--gcc
B D                  Marmoset  ag--------------------------t--gcc
B D           Squirrel monkey  ag--------------------------c--acc
           Chinese tree shrew  ag--------------------------a--gc-
B D                  Squirrel  gc--------------------------t-----
       Lesser Egyptian jerboa  aa--------------------------a--gtt
                 Prairie vole  gg--------------------------a-----
B D                     Mouse  gg--------------------------a-----
B D                       Rat  gg--------------------------a-----
B D            Naked mole-rat  aggcccaggcccaggccgacccaagccaa--gcc
B D                Guinea pig  ag--------------------------a--gct
                   Chinchilla  ag--------------------------a--gcc
             Brush-tailed rat  g---------------------------------
B D                    Rabbit  gg--------------------------a--gcc
B D                      Pika  -a--------------------------a--ggc
B D                       Pig  ag--------------------------a--gcc
B D                    Alpaca  ag--------------------------a--gct
               Bactrian camel  ag--------------------------a--gct
B D                   Dolphin  ag--------------------------a--gcc
                 Killer whale  ag--------------------------a--gcc
B D                       Cow  ag--------------------------a--gcc
B D                     Sheep  ag--------------------------a--gct
                Domestic goat  ag--------------------------a--gcc
B D                     Horse  ag--------------------------a--gcc
B D          White rhinoceros  ag--------------------------a--gcc
B D                       Cat  ag--------------------------a--gcc
B D                       Dog  ag--------------------------a--gtc
B D                   Ferret   gg--------------------------a--gcc
B D                     Panda  ag--------------------------a--gct
               Pacific walrus  ag--------------------------a--gcc
                 Weddell seal  ag--------------------------a--gcc
             Black flying-fox  ag--------------------------a--gct
B D                   Megabat  ag--------------------------a--gct
                Big brown bat  ag--------------------------a--gcc
         David's myotis (bat)  ag--------------------------a--gcc
B D                  Microbat  ag--------------------------a--gcc
B D                  Hedgehog  ag--------------------------a--ctt
B D                     Shrew  ac--------------------------a--cgg
              Star-nosed mole  gg--------------------------a--cag
B D                  Elephant  gg--------------------------a--ata
          Cape elephant shrew  gg--------------------------g--gta
             Cape golden mole  cg--------------------------a--gct
                     Aardvark  ag--------------------------a--ac-
B D                 Armadillo  ag--------------------------a--gct
B D                   Opossum  g---------------------------------
B D                  Platypus  cg--------------------------a--acc
  D    White-throated sparrow  ga--------------------------a--ac-
B D       Medium ground finch  ga--------------------------a--ac-
B D               Zebra finch  aa--------------------------a--aa-
           Tibetan ground jay  ga--------------------------a--ac-
  D                    Parrot  ga--------------------------accac-
  D             Scarlet macaw  ga--------------------------accac-
  D              Mallard duck  aa--------------------------t--ac-
  D           Green seaturtle  ga--------------------------a--ac-
  D            Painted turtle  gc--------------------------a--gt-
  D    Spiny softshell turtle  ga--------------------------a--g--
B D                      Fugu  --------------------------gca--gc-
       Yellowbelly pufferfish  --------------------------gca--gc-
B D                    Tenrec  ==================================
              Golden hamster  ----------------------------------
B D           Chinese hamster  ----------------------------------
            Tibetan antelope  ----------------------------------
B D                   Manatee  ==================================
B D                  Bushbaby  ==================================
B D               Stickleback  ----------------------------------
         Pundamilia nyererei  ==================================
                 Zebra mbuna  ==================================
       Burton's mouthbreeder  ==================================
         Princess of Burundi  ==================================
B D                    Medaka  ==================================
B D                Coelacanth  ==================================
B D                    Turkey  ==================================
                 Spotted gar  ==================================
B D                Budgerigar  ==================================
B D                   Wallaby  ==================================
B D                    Lizard  ==================================
          Southern platyfish  ==================================
    Mexican tetra (cavefish)  ==================================
  D          Peregrine falcon  ==================================
B D                 Zebrafish  ==================================
  D               Rock pigeon  ==================================
B D              Nile tilapia  ==================================
B D                 Tetraodon  ==================================
B D                   Chicken  ==================================
B D              Atlantic cod  ----------------------------------
  D       Collared flycatcher  ==================================
  D  Chinese softshell turtle  ==================================
  D              Saker falcon  ==================================
B D             X. tropicalis  ==================================
B D        American alligator  ==================================
B D           Tasmanian devil  ==================================

Inserts between block 28 and 29 in window
B D                 Platypus 3bp
  D          Green seaturtle 4bp
  D           Painted turtle 4bp
  D   Spiny softshell turtle 5bp

Alignment block 29 of 93 in window, 76050406 - 76050411, 6 bps 
B D                     Human  aggg---ct
B D                     Chimp  aggg---ct
B D                   Gorilla  gggg---ct
B D                 Orangutan  aggc---ct
B D                    Gibbon  aggg---ct
B D                    Rhesus  aggg---ct
B D       Crab-eating macaque  aggg---ct
B D                    Baboon  aggg---ct
B D              Green monkey  aggg---ct
B D                  Marmoset  aggg---ct
B D           Squirrel monkey  aggg---ct
           Chinese tree shrew  -agg---tc
       Lesser Egyptian jerboa  tgtg---tt
B D            Naked mole-rat  ggcg---gt
B D                Guinea pig  ggtg---gt
                   Chinchilla  -gcg---gt
             Brush-tailed rat  -gcg---gc
B D                    Rabbit  gctg---gc
B D                      Pika  ggcg---gc
B D                       Pig  -gtg---gc
B D                    Alpaca  ggtg---cc
               Bactrian camel  ggtg---cc
B D                   Dolphin  cgtg---gc
                 Killer whale  cgtg---gc
B D                       Cow  -ggg---ac
B D                     Sheep  gggg---ac
                Domestic goat  gggg---ac
B D                     Horse  agtg---gc
B D          White rhinoceros  agtg---gc
B D                       Cat  tggg---gc
B D                       Dog  ggtg---gc
B D                   Ferret   agtg---gc
B D                     Panda  ggtg---gc
               Pacific walrus  ggtg---gc
                 Weddell seal  ggtg---gc
             Black flying-fox  ggcg---gc
B D                   Megabat  ggcg---gc
                Big brown bat  cgc----cc
         David's myotis (bat)  cgc----cc
B D                  Microbat  cgc----cc
B D                  Hedgehog  ggtg---gc
B D                     Shrew  agcc----c
              Star-nosed mole  agccgccgc
B D                  Elephant  ctca---gc
          Cape elephant shrew  ggca---gg
             Cape golden mole  cgca---gc
B D                 Armadillo  ggtg---gc
B D                   Opossum  gggg---at
B D           Tasmanian devil  aggg---gt
B D                  Platypus  ggtg---cc
B D                      Fugu  agcg---ct
       Yellowbelly pufferfish  agcg---ct
           Southern platyfish  agga---cc
B D               Stickleback  ---a---tt
B D              Atlantic cod  -gtg---gt
B D                    Tenrec  =========
B D                       Rat  ---------
B D                     Mouse  ---------
              Golden hamster  ---------
B D           Chinese hamster  ---------
                Prairie vole  ---------
            Tibetan antelope  ---------
B D                  Squirrel  ---------
B D                   Manatee  =========
B D                  Bushbaby  =========
                    Aardvark  ---------
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
         Princess of Burundi  =========
B D                    Medaka  =========
B D                Coelacanth  =========
B D                    Turkey  =========
                 Spotted gar  =========
  D              Mallard duck  ---------
  D             Scarlet macaw  ---------
  D                    Parrot  ---------
B D                Budgerigar  =========
B D                   Wallaby  =========
  D    Spiny softshell turtle  =========
B D                    Lizard  =========
    Mexican tetra (cavefish)  =========
  D          Peregrine falcon  =========
B D                 Zebrafish  =========
  D               Rock pigeon  =========
B D              Nile tilapia  =========
  D            Painted turtle  =========
B D                 Tetraodon  =========
B D                   Chicken  =========
  D       Collared flycatcher  =========
  D  Chinese softshell turtle  =========
B D               Zebra finch  ---------
  D              Saker falcon  =========
B D             X. tropicalis  =========
  D           Green seaturtle  =========
B D       Medium ground finch  ---------
B D        American alligator  =========
  D    White-throated sparrow  ---------
          Tibetan ground jay  ---------

Inserts between block 29 and 30 in window
B D                 Marmoset 1bp
B D          Squirrel monkey 1bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                 Hedgehog 1bp
B D                    Shrew 1bp
             Star-nosed mole 1bp
B D                 Elephant 1bp
         Cape elephant shrew 1bp
            Cape golden mole 6bp
B D                Armadillo 6bp
B D                 Platypus 1bp
B D                     Fugu 13bp
      Yellowbelly pufferfish 13bp
          Southern platyfish 1bp
B D              Stickleback 3bp

Alignment block 30 of 93 in window, 76050412 - 76050415, 4 bps 
B D                     Human  cggc
B D                     Chimp  cagc
B D                   Gorilla  cggc
B D                 Orangutan  cggc
B D                    Gibbon  cggc
B D                    Rhesus  cagc
B D       Crab-eating macaque  cagc
B D                    Baboon  cagc
B D              Green monkey  cagc
B D                  Marmoset  cagc
B D           Squirrel monkey  cggc
           Chinese tree shrew  cagc
       Lesser Egyptian jerboa  tagc
B D            Naked mole-rat  cagg
B D                Guinea pig  ccag
                   Chinchilla  tcag
             Brush-tail