Multiz Alignments of 100 Vertebrates
 

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Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 652 in window, 123908313 - 123908313, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  c
       Lesser Egyptian jerboa  c
B D                      Pika  t
B D                       Pig  c
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  c
                 Killer whale  c
B D                     Horse  c
B D          White rhinoceros  c
B D                       Cat  g
B D                       Dog  g
B D                   Ferret   g
                 Weddell seal  g
B D                  Hedgehog  a
B D                  Elephant  c
          Cape elephant shrew  g
B D                   Manatee  c
             Cape golden mole  c
                     Aardvark  c
B D                   Opossum  c
B D           Tasmanian devil  c
B D                  Platypus  c
  D               Rock pigeon  c
  D              Saker falcon  c
  D          Peregrine falcon  c
  D       Collared flycatcher  g
  D    White-throated sparrow  c
B D       Medium ground finch  c
B D               Zebra finch  c
           Tibetan ground jay  c
B D                Budgerigar  t
  D                    Parrot  t
  D              Mallard duck  c
B D                   Chicken  c
B D                    Turkey  c
B D        American alligator  c
  D            Painted turtle  a
  D  Chinese softshell turtle  g
  D    Spiny softshell turtle  a
B D             X. tropicalis  c
B D                Coelacanth  c
B D                    Medaka  t
           Southern platyfish  c
B D               Stickleback  t
B D              Atlantic cod  t
B D                 Zebrafish  g
     Mexican tetra (cavefish)  g
B D                   Lamprey  c
B D                Guinea pig  =
B D                    Rabbit  -
B D                     Shrew  =
              Golden hamster  =
            Brush-tailed rat  =
                 Spotted gar  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D           Green seaturtle  =
  D             Scarlet macaw  =
                  Chinchilla  =
B D            Naked mole-rat  =
B D                    Lizard  =
B D           Chinese hamster  =
                Prairie vole  =
B D                    Tenrec  =
B D                   Megabat  -
B D                       Rat  =
B D                     Mouse  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  N
              Pacific walrus  =
            Black flying-fox  =
B D                  Squirrel  =
B D                 Armadillo  N
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Cow  -

Inserts between block 1 and 2 in window
B D                 Elephant 3bp
         Cape elephant shrew 3bp
B D                  Manatee 3bp
            Cape golden mole 3bp
                    Aardvark 3bp
B D                  Opossum 3bp
B D          Tasmanian devil 3bp
B D                 Platypus 2bp
  D              Rock pigeon 4bp
  D             Saker falcon 4bp
  D         Peregrine falcon 4bp
  D      Collared flycatcher 4bp
  D   White-throated sparrow 4bp
B D      Medium ground finch 4bp
B D              Zebra finch 4bp
          Tibetan ground jay 4bp
B D               Budgerigar 4bp
  D                   Parrot 4bp
  D             Mallard duck 4bp
B D                  Chicken 4bp
B D                   Turkey 5bp
B D       American alligator 4bp
  D           Painted turtle 18bp
  D Chinese softshell turtle 17bp
  D   Spiny softshell turtle 21bp
B D                   Medaka 25bp
          Southern platyfish 6bp
B D              Stickleback 1795bp
B D             Atlantic cod 14bp
B D                Zebrafish 8bp
    Mexican tetra (cavefish) 9bp

Alignment block 2 of 652 in window, 123908314 - 123908317, 4 bps 
B D                     Human  --ct-----c----------------t
B D                     Chimp  --ct-----c----------------t
B D                   Gorilla  --ct-----c----------------t
B D                 Orangutan  --ct-----c----------------g
B D                    Gibbon  --ct-----c----------------g
B D                    Rhesus  --ct-----c----------------g
B D       Crab-eating macaque  --ct-----c----------------g
B D                    Baboon  --ct-----c----------------g
B D              Green monkey  --ct-----c----------------g
B D                  Marmoset  --ct-----c----------------a
B D           Squirrel monkey  --ct-----c----------------a
B D                  Bushbaby  --c------c----------------t
           Chinese tree shrew  --ct-----t-----------------
       Lesser Egyptian jerboa  --tt-----------------------
B D                      Pika  --ctctg--------------------
B D                       Pig  --ctgtgaca-----------------
B D                    Alpaca  --ct-----c-----------------
               Bactrian camel  --ct-----c-----------------
B D                   Dolphin  --ct----cc-----------------
                 Killer whale  --ct----cc-----------------
B D                       Cow  ---------c-----------------
B D                     Horse  --ct-----c-----------------
B D          White rhinoceros  --ct-----c-----------------
B D                       Cat  --cc-----c-----------------
B D                       Dog  --ct-----c-----------------
B D                   Ferret   --ct-----t-----------------
                 Weddell seal  --ct-----t-----------------
B D                  Hedgehog  --cc-----cccaatttgtgtgactt-
B D                  Elephant  --ca-----------------------
          Cape elephant shrew  --ca-----------------------
B D                   Manatee  --cc-----------------------
             Cape golden mole  --ca-----------------------
                     Aardvark  --ca-----------------------
B D                 Armadillo  --tc-----------------------
B D                   Opossum  --ct-----------------------
B D           Tasmanian devil  --cg-----------------------
B D                  Platypus  --ct-----c-----------------
  D               Rock pigeon  --c------------------------
  D              Saker falcon  --c------------------------
  D          Peregrine falcon  --c------------------------
  D       Collared flycatcher  --c------------------------
  D    White-throated sparrow  --c------------------------
B D       Medium ground finch  --c------------------------
B D               Zebra finch  --c------------------------
           Tibetan ground jay  --c------------------------
B D                Budgerigar  --c------------------------
  D                    Parrot  --c------------------------
  D              Mallard duck  --c------------------------
B D                   Chicken  --t------------------------
B D        American alligator  --c------------------------
  D            Painted turtle  --c------------------------
  D  Chinese softshell turtle  --c------------------------
  D    Spiny softshell turtle  --c------------------------
B D             X. tropicalis  -----------------------ctga
B D                Coelacanth  ------------------------cag
B D                   Lamprey  ctct-----------------------
B D                Guinea pig  ===========================
B D                    Rabbit  ---------------------------
B D                     Shrew  ===========================
              Golden hamster  ===========================
            Brush-tailed rat  ===========================
B D              Atlantic cod  ===========================
                 Spotted gar  ===========================
B D               Stickleback  ===========================
          Southern platyfish  ===========================
      Yellowbelly pufferfish  ===========================
B D                      Fugu  ===========================
B D                 Tetraodon  ===========================
B D                    Turkey  ===========================
    Mexican tetra (cavefish)  ===========================
B D                 Zebrafish  ===========================
B D                    Medaka  ===========================
         Pundamilia nyererei  ===========================
                 Zebra mbuna  ===========================
       Burton's mouthbreeder  ===========================
         Princess of Burundi  ===========================
B D              Nile tilapia  ===========================
  D           Green seaturtle  ===========================
  D             Scarlet macaw  ===========================
                  Chinchilla  ===========================
B D            Naked mole-rat  ===========================
B D                    Lizard  ===========================
B D           Chinese hamster  ===========================
                Prairie vole  ===========================
B D                    Tenrec  ===========================
B D                   Megabat  ---------------------------
B D                       Rat  ===========================
B D                     Mouse  ===========================
B D                     Panda  ===========================
               Domestic goat  ===========================
B D                     Sheep  ===========================
            Tibetan antelope  ===========================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ===========================
            Black flying-fox  ===========================
B D                  Squirrel  ===========================
        David's myotis (bat)  ===========================
               Big brown bat  ===========================
B D                  Microbat  ===========================

Inserts between block 2 and 3 in window
B D                      Cat 10bp
B D                      Dog 17bp
B D                  Ferret  2bp
                Weddell seal 2bp
B D                 Platypus 2bp
  D              Rock pigeon 2bp
  D             Saker falcon 2bp
  D         Peregrine falcon 2bp
  D      Collared flycatcher 2bp
  D   White-throated sparrow 2bp
B D      Medium ground finch 2bp
B D              Zebra finch 2bp
          Tibetan ground jay 2bp
B D               Budgerigar 4bp
  D                   Parrot 2bp
  D             Mallard duck 2bp
B D                  Chicken 2bp
B D       American alligator 2bp
  D           Painted turtle 2bp
  D Chinese softshell turtle 2bp
  D   Spiny softshell turtle 2bp

Alignment block 3 of 652 in window, 123908318 - 123908318, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  c
B D             X. tropicalis  t
B D                Coelacanth  t
B D              Nile tilapia  c
B D                    Medaka  c
           Southern platyfish  c
B D              Atlantic cod  c
B D                 Zebrafish  t
     Mexican tetra (cavefish)  c
B D                   Lamprey  t
B D                  Hedgehog  -
B D                Guinea pig  =
B D                      Pika  -
B D                    Rabbit  -
  D    Spiny softshell turtle  =
B D                     Shrew  =
              Golden hamster  =
            Brush-tailed rat  =
                 Spotted gar  =
B D               Stickleback  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  -
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
  D             Scarlet macaw  =
B D                Budgerigar  =
B D                   Opossum  -
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  -
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D                    Parrot  =
            Cape golden mole  -
         Cape elephant shrew  -
B D                  Platypus  =
B D                   Manatee  -
B D           Chinese hamster  =
                Prairie vole  =
                    Aardvark  -
B D                  Elephant  -
B D                    Tenrec  =
B D                       Cat  =
B D                   Megabat  -
B D                       Pig  -
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                   Dolphin  -
B D                       Rat  =
B D                     Mouse  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  N
              Bactrian camel  -
B D                    Alpaca  -
              Pacific walrus  =
            Black flying-fox  =
B D          White rhinoceros  -
B D                     Horse  -
B D                  Squirrel  =
B D                 Armadillo  -
                Weddell seal  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Dog  =
B D                       Cow  -
                Killer whale  -

Inserts between block 3 and 4 in window
B D            X. tropicalis 2bp
B D               Coelacanth 3bp
B D             Nile tilapia 3bp
B D                   Medaka 3bp
          Southern platyfish 3bp
B D             Atlantic cod 3bp
B D                Zebrafish 3bp
    Mexican tetra (cavefish) 3bp

Alignment block 4 of 652 in window, 123908319 - 123908322, 4 bps 
B D                     Human  --tctt
B D                     Chimp  --tctt
B D                   Gorilla  --tctt
B D                 Orangutan  --tctt
B D                    Gibbon  --tctt
B D                    Rhesus  --tctt
B D       Crab-eating macaque  --tctt
B D                    Baboon  --tctt
B D              Green monkey  --tctt
B D                  Marmoset  --tctt
B D           Squirrel monkey  --tctt
B D                  Bushbaby  --tctt
           Chinese tree shrew  --cctt
B D                  Squirrel  --tctt
B D                      Pika  ---tct
B D                  Elephant  --cttt
          Cape elephant shrew  --cgtg
B D                   Manatee  --cctt
             Cape golden mole  --tctt
                     Aardvark  --cctt
B D                 Armadillo  --cctt
B D                   Opossum  ----tt
B D           Tasmanian devil  ----at
B D                  Platypus  --tc--
  D               Rock pigeon  --cc--
  D              Saker falcon  --tg--
  D          Peregrine falcon  --tg--
  D       Collared flycatcher  --ga--
  D    White-throated sparrow  --tc--
B D       Medium ground finch  --tg--
B D               Zebra finch  --tt--
           Tibetan ground jay  --tc--
B D                Budgerigar  --tg--
  D                    Parrot  --ta--
  D              Mallard duck  --tg--
B D                   Chicken  --tg--
B D                    Turkey  --tc--
B D        American alligator  --ta--
  D            Painted turtle  --tc--
  D  Chinese softshell turtle  --tc--
  D    Spiny softshell turtle  --tc--
B D             X. tropicalis  --ta--
B D                Coelacanth  --tg--
B D              Nile tilapia  --t---
B D                    Medaka  --t---
           Southern platyfish  --t---
B D              Atlantic cod  --c---
B D                 Zebrafish  --t---
     Mexican tetra (cavefish)  --t---
                  Spotted gar  --t---
B D                   Lamprey  cctc--
B D                  Hedgehog  ------
B D                Guinea pig  ======
B D                    Rabbit  ------
B D                     Shrew  ======
              Golden hamster  ======
            Brush-tailed rat  ======
B D               Stickleback  ======
      Yellowbelly pufferfish  ======
B D                      Fugu  ======
B D                 Tetraodon  ======
         Pundamilia nyererei  ======
                 Zebra mbuna  ======
       Burton's mouthbreeder  ======
         Princess of Burundi  ======
  D           Green seaturtle  ======
  D             Scarlet macaw  ======
                  Chinchilla  ======
B D            Naked mole-rat  ======
      Lesser Egyptian jerboa  ------
B D                    Lizard  ======
B D           Chinese hamster  ======
                Prairie vole  ======
B D                    Tenrec  ======
B D                       Cat  ======
B D                   Megabat  ------
B D                       Pig  ------
B D                   Ferret   ======
B D                   Dolphin  ------
B D                       Rat  ======
B D                     Mouse  ======
B D                     Panda  ======
               Domestic goat  ======
B D                     Sheep  ======
            Tibetan antelope  ======
             Star-nosed mole  NNNNNN
              Bactrian camel  ------
B D                    Alpaca  ------
              Pacific walrus  ======
            Black flying-fox  ======
B D          White rhinoceros  ------
B D                     Horse  ------
                Weddell seal  ======
        David's myotis (bat)  ======
               Big brown bat  ======
B D                  Microbat  ======
B D                       Dog  ======
B D                       Cow  ------
                Killer whale  ------

Inserts between block 4 and 5 in window
B D                  Opossum 2bp
B D          Tasmanian devil 2bp
B D                 Platypus 2bp

Alignment block 5 of 652 in window, 123908323 - 123908323, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  t
           Chinese tree shrew  c
B D                  Squirrel  a
B D                      Pika  t
B D                       Pig  t
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  c
                 Killer whale  c
B D                       Cow  c
B D                     Horse  c
B D          White rhinoceros  c
B D                       Cat  c
B D                   Ferret   c
B D                     Panda  c
                 Weddell seal  c
B D                  Hedgehog  t
B D                  Elephant  c
          Cape elephant shrew  c
B D                   Manatee  c
             Cape golden mole  c
                     Aardvark  c
B D                 Armadillo  c
B D                   Opossum  c
B D           Tasmanian devil  c
B D                  Platypus  t
  D               Rock pigeon  c
  D              Saker falcon  c
  D          Peregrine falcon  c
  D       Collared flycatcher  c
  D    White-throated sparrow  c
B D       Medium ground finch  t
B D               Zebra finch  c
           Tibetan ground jay  c
B D                Budgerigar  t
  D                    Parrot  t
  D              Mallard duck  t
B D                   Chicken  t
B D                    Turkey  t
B D        American alligator  c
  D            Painted turtle  c
  D  Chinese softshell turtle  c
  D    Spiny softshell turtle  c
B D             X. tropicalis  c
B D                Coelacanth  c
B D              Nile tilapia  g
B D                    Medaka  g
           Southern platyfish  a
B D              Atlantic cod  t
B D                 Zebrafish  t
     Mexican tetra (cavefish)  c
                  Spotted gar  a
B D                   Lamprey  c
B D                Guinea pig  =
B D                    Rabbit  -
B D                     Shrew  =
              Golden hamster  =
            Brush-tailed rat  =
B D               Stickleback  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
  D           Green seaturtle  =
  D             Scarlet macaw  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  -
B D                    Lizard  =
B D           Chinese hamster  =
                Prairie vole  =
B D                    Tenrec  =
B D                   Megabat  -
B D                       Rat  =
B D                     Mouse  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  N
              Pacific walrus  =
            Black flying-fox  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Dog  =

Inserts between block 5 and 6 in window
B D          Tasmanian devil 6bp
  D              Rock pigeon 3bp
  D             Saker falcon 18bp
  D         Peregrine falcon 28bp
  D      Collared flycatcher 3bp
  D   White-throated sparrow 3bp
B D      Medium ground finch 3bp
B D              Zebra finch 3bp
          Tibetan ground jay 9875bp
B D               Budgerigar 14bp
  D                   Parrot 14bp
  D             Mallard duck 7bp
B D                  Chicken 7bp
B D                   Turkey 7bp
B D       American alligator 1bp
  D           Painted turtle 6bp
  D Chinese softshell turtle 1bp
  D   Spiny softshell turtle 6bp
B D               Coelacanth 2bp

Alignment block 6 of 652 in window, 123908324 - 123908326, 3 bps 
B D                     Human  tct
B D                     Chimp  tct
B D                   Gorilla  tct
B D                 Orangutan  ttt
B D                    Gibbon  tct
B D                    Rhesus  tct
B D       Crab-eating macaque  tct
B D                    Baboon  tct
B D              Green monkey  tct
B D                  Marmoset  tct
B D           Squirrel monkey  tct
B D                  Bushbaby  tgt
           Chinese tree shrew  tcg
B D                  Squirrel  tct
B D                    Rabbit  tgg
B D                      Pika  ttg
B D                       Pig  gcg
B D                    Alpaca  tcg
               Bactrian camel  tcg
B D                   Dolphin  tct
                 Killer whale  tct
B D                       Cow  tct
B D                     Horse  tca
B D          White rhinoceros  tcc
B D                       Cat  tct
B D                   Ferret   tct
B D                     Panda  tct
                 Weddell seal  tct
B D                  Hedgehog  tct
B D                  Elephant  tct
          Cape elephant shrew  tcc
B D                   Manatee  tct
             Cape golden mole  tct
                     Aardvark  tct
B D                 Armadillo  cct
B D                   Opossum  cct
B D           Tasmanian devil  cct
B D                  Platypus  tcc
  D               Rock pigeon  -cc
  D              Saker falcon  -cc
  D          Peregrine falcon  -cc
  D       Collared flycatcher  -cc
  D    White-throated sparrow  -ca
B D       Medium ground finch  -cg
B D               Zebra finch  -ct
           Tibetan ground jay  -cc
B D                Budgerigar  -cc
  D                    Parrot  -ct
  D              Mallard duck  -cc
B D                   Chicken  -cc
B D                    Turkey  -cc
B D        American alligator  -cc
  D            Painted turtle  -ct
  D  Chinese softshell turtle  -ct
  D    Spiny softshell turtle  -ct
B D             X. tropicalis  tct
B D                Coelacanth  tct
B D              Nile tilapia  ctc
B D                    Medaka  tcc
           Southern platyfish  tcc
B D              Atlantic cod  ctc
B D                 Zebrafish  cct
     Mexican tetra (cavefish)  cct
                  Spotted gar  tcc
B D                   Lamprey  t--
B D                Guinea pig  ===
B D                     Shrew  ===
              Golden hamster  ===
            Brush-tailed rat  ===
B D               Stickleback  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
B D                 Tetraodon  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
  D           Green seaturtle  ===
  D             Scarlet macaw  ===
                  Chinchilla  ===
B D            Naked mole-rat  ===
      Lesser Egyptian jerboa  ---
B D                    Lizard  ===
B D           Chinese hamster  ===
                Prairie vole  ===
B D                    Tenrec  ===
B D                   Megabat  ---
B D                       Rat  ===
B D                     Mouse  ===
               Domestic goat  ===
B D                     Sheep  ===
            Tibetan antelope  ===
             Star-nosed mole  NNN
              Pacific walrus  ===
            Black flying-fox  ===
        David's myotis (bat)  ===
               Big brown bat  ===
B D                  Microbat  ===
B D                       Dog  ===

Inserts between block 6 and 7 in window
  D              Rock pigeon 1bp
  D      Collared flycatcher 1bp
  D   White-throated sparrow 1bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp
          Tibetan ground jay 61bp
  D             Mallard duck 11bp
B D                  Chicken 5bp
B D                   Turkey 3bp
B D       American alligator 10bp
  D           Painted turtle 15bp
  D Chinese softshell turtle 31bp
  D   Spiny softshell turtle 25bp
B D               Coelacanth 1bp
B D             Nile tilapia 1bp
B D                   Medaka 4bp
          Southern platyfish 2bp
B D             Atlantic cod 1bp
B D                Zebrafish 4bp
    Mexican tetra (cavefish) 4bp
                 Spotted gar 1bp

Alignment block 7 of 652 in window, 123908327 - 123908336, 10 bps 
B D                     Human  ggctcacccc--
B D                     Chimp  ggctcacccc--
B D                   Gorilla  gcctcacccc--
B D                 Orangutan  ggctcacccc--
B D                    Gibbon  ggctcacccc--
B D                    Rhesus  ggctcacccc--
B D       Crab-eating macaque  ggctcacccc--
B D                    Baboon  ggctcacccc--
B D              Green monkey  ggctcacccc--
B D                  Marmoset  gactcacccc--
B D           Squirrel monkey  gactcacccc--
B D                  Bushbaby  ggctcccctc--
           Chinese tree shrew  ggccttcctc--
B D                  Squirrel  cccccacct---
       Lesser Egyptian jerboa  ----cacac---
B D                    Rabbit  gctctgccc---
B D                      Pika  tctttgcct---
B D                       Pig  gaagttccaa--
B D                    Alpaca  ggggcaccct--
               Bactrian camel  ggggcaccct--
B D                   Dolphin  ggggcactct--
                 Killer whale  ggggcactct--
B D                       Cow  ggggccttct--
B D                     Horse  gggtcagtct--
B D          White rhinoceros  gggtcattct--
B D                       Cat  ggatcaccct--
B D                   Ferret   gggttggtca--
B D                     Panda  gggtcgctct--
                 Weddell seal  gggttgctct--
B D                  Hedgehog  aggccccgct--
B D                  Elephant  gggccatccc--
          Cape elephant shrew  agtccctgcc--
B D                   Manatee  gggtcatcct--
             Cape golden mole  gggacaccct--
                     Aardvark  gagtcatcct--
B D                 Armadillo  gggtcagcct--
B D                   Opossum  ggatctctcc--
B D           Tasmanian devil  gcggccttcc--
B D                  Platypus  aaggcctc----
  D               Rock pigeon  tgcacactca--
  D              Saker falcon  atcccatccc--
  D          Peregrine falcon  atcccatccc--
  D       Collared flycatcher  --ctcacccc--
  D    White-throated sparrow  --cccccttc--
B D       Medium ground finch  --gtcacctc--
B D               Zebra finch  --tctccctc--
B D                Budgerigar  -----atccc--
  D                    Parrot  -----ctctc--
  D              Mallard duck  acttcaacgt--
B D                   Chicken  acctcactgt--
B D                    Turkey  atccca-tcc--
B D        American alligator  accccgttgc--
  D            Painted turtle  gttccctctg--
  D  Chinese softshell turtle  cttccatcca--
  D    Spiny softshell turtle  tttccatgtc--
B D             X. tropicalis  --gtctcc----
B D                Coelacanth  agtttgttg---
B D              Nile tilapia  --ctcactca--
B D                    Medaka  gctccgcacc--
           Southern platyfish  ccctcgctct--
B D              Atlantic cod  ctttcactct--
B D                 Zebrafish  tttt--------
     Mexican tetra (cavefish)  ctttcactca--
                  Spotted gar  gctccagttc--
B D                   Lamprey  ----catccctc
B D                Guinea pig  ============
B D                     Shrew  ============
              Golden hamster  ============
            Brush-tailed rat  ============
B D               Stickleback  ============
      Yellowbelly pufferfish  ============
B D                      Fugu  ============
B D                 Tetraodon  ============
          Tibetan ground jay  ============
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
         Princess of Burundi  ============
  D           Green seaturtle  ============
  D             Scarlet macaw  ============
                  Chinchilla  ============
B D            Naked mole-rat  ============
B D                    Lizard  ============
B D           Chinese hamster  ============
                Prairie vole  ============
B D                    Tenrec  ============
B D                   Megabat  ------------
B D                       Rat  ============
B D                     Mouse  ============
               Domestic goat  ============
B D                     Sheep  ============
            Tibetan antelope  ============
             Star-nosed mole  NNNNNNNNNNNN
              Pacific walrus  ============
            Black flying-fox  ============
        David's myotis (bat)  ============
               Big brown bat  ============
B D                  Microbat  ============
B D                       Dog  ============

Inserts between block 7 and 8 in window
B D                 Squirrel 3bp
      Lesser Egyptian jerboa 3bp
         Cape elephant shrew 4bp
B D             Nile tilapia 4bp
B D                   Medaka 4bp
          Southern platyfish 4bp
B D             Atlantic cod 4bp
B D                Zebrafish 4bp
    Mexican tetra (cavefish) 4bp
                 Spotted gar 4bp

Alignment block 8 of 652 in window, 123908337 - 123908343, 7 bps 
B D                     Human  agcct-cc
B D                     Chimp  agcct-cc
B D                   Gorilla  agcct-cc
B D                 Orangutan  agcct-cc
B D                    Gibbon  agcct-cc
B D                    Rhesus  agcct-cc
B D       Crab-eating macaque  agcct-cc
B D                    Baboon  agcct-cc
B D              Green monkey  ggcct-cc
B D                  Marmoset  agcct-cc
B D           Squirrel monkey  agcct-cc
B D                  Bushbaby  agcct-cc
           Chinese tree shrew  ------ct
B D                  Squirrel  tgcct-cc
       Lesser Egyptian jerboa  agtct-cc
             Brush-tailed rat  agccg-cc
B D                    Rabbit  aggcg-cc
B D                      Pika  --ttg-tc
B D                       Pig  ggc-----
B D                    Alpaca  ggc-----
               Bactrian camel  ggc-----
B D                   Dolphin  ggc-----
                 Killer whale  ggc-----
B D                       Cow  ggc-----
B D                     Horse  ggcct-cc
B D          White rhinoceros  ggcct-cc
B D                       Cat  ggcct-cc
B D                       Dog  -ggct-cc
B D                   Ferret   ggcct-tc
B D                     Panda  gggct-cc
                 Weddell seal  ggcct-cc
B D                  Hedgehog  gga-----
B D                  Elephant  ggccc-cc
          Cape elephant shrew  tgtcc-ct
B D                   Manatee  ggccc-cc
             Cape golden mole  ggccc-ac
                     Aardvark  gtccc-cc
B D                 Armadillo  ggctt-cc
B D                   Opossum  ---ct-cc
B D           Tasmanian devil  ---cg-cc
B D                  Platypus  ggtct-cc
  D               Rock pigeon  ----t-cc
  D              Saker falcon  ----a-tc
  D          Peregrine falcon  ----a-tc
  D       Collared flycatcher  ----ggcc
  D    White-throated sparrow  ----t-cc
B D       Medium ground finch  ----t-cc
B D               Zebra finch  ----tgcc
B D                Budgerigar  ----t-ac
  D                    Parrot  ----t-cc
  D              Mallard duck  ----c-ac
B D                   Chicken  ----g-tc
B D                    Turkey  ----c-tc
B D        American alligator  ----t-cc
  D            Painted turtle  ----c-cc
  D  Chinese softshell turtle  ----c-cc
  D    Spiny softshell turtle  ----t-cc
B D             X. tropicalis  atcct-tc
B D                Coelacanth  ggatt-tc
B D              Nile tilapia  ------ta
B D                    Medaka  ------aa
           Southern platyfish  ------aa
B D              Atlantic cod  ------ct
B D                 Zebrafish  ------tc
     Mexican tetra (cavefish)  ------tg
                  Spotted gar  ------cc
B D                   Lamprey  tgttt-ac
B D                Guinea pig  ========
B D                     Shrew  ========
              Golden hamster  ========
B D               Stickleback  ========
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
B D                 Tetraodon  ========
          Tibetan ground jay  ========
         Pundamilia nyererei  ========
                 Zebra mbuna  ========
       Burton's mouthbreeder  ========
         Princess of Burundi  ========
  D           Green seaturtle  ========
  D             Scarlet macaw  ========
                  Chinchilla  ========
B D            Naked mole-rat  ========
B D                    Lizard  ========
B D           Chinese hamster  ========
                Prairie vole  ========
B D                    Tenrec  ========
B D                   Megabat  --------
B D                       Rat  ========
B D                     Mouse  ========
               Domestic goat  ========
B D                     Sheep  ========
            Tibetan antelope  ========
             Star-nosed mole  NNNNNNNN
              Pacific walrus  ========
            Black flying-fox  ========
        David's myotis (bat)  ========
               Big brown bat  ========
B D                  Microbat  ========

Inserts between block 8 and 9 in window
      Lesser Egyptian jerboa 44bp
B D          Tasmanian devil 1bp
  D              Rock pigeon 3bp
  D             Saker falcon 3bp
  D         Peregrine falcon 3bp
  D      Collared flycatcher 3bp
B D      Medium ground finch 1bp
B D               Budgerigar 3bp
B D       American alligator 3bp
  D           Painted turtle 3bp
  D Chinese softshell turtle 2bp
  D   Spiny softshell turtle 3bp
B D                   Medaka 3bp
          Southern platyfish 10bp
B D             Atlantic cod 10bp
B D                Zebrafish 11bp
    Mexican tetra (cavefish) 25bp
                 Spotted gar 35bp

Alignment block 9 of 652 in window, 123908344 - 123908386, 43 bps 
B D                     Human  taccagagcac-----------------------a-----a-----------------------------
B D                     Chimp  taccagagcac-----------------------a-----a-----------------------------
B D                   Gorilla  taccagagcac-----------------------a-----a-----------------------------
B D                 Orangutan  taccagagcac-----------------------a-----a-----------------------------
B D                    Gibbon  taccagagcac-----------------------a-----a-----------------------------
B D                    Rhesus  taccagagccc-----------------------a-----a-----------------------------
B D       Crab-eating macaque  taccagagccc-----------------------a-----a-----------------------------
B D                    Baboon  taccagagccc-----------------------a-----a-----------------------------
B D              Green monkey  taccagagccc-----------------------a-----a-----------------------------
B D                  Marmoset  tagcagagcac-----------------------a-----------------------------------
B D           Squirrel monkey  cacctcagcgc-----------------------a-----------------------------------
B D                  Bushbaby  tgctggagtag-----------------------gacagta-----------------------------
           Chinese tree shrew  tcctggaggac-----------------------g-----t-----------------------------
B D                  Squirrel  ---tggagcac-----------------------c-----acactg------------------------
             Brush-tailed rat  tgcaggagccc-----------------------g-----a-----------------------------
B D                    Rabbit  ----------------------------------------------------------------------
B D                      Pika  ----------------------------------------------------------------------
B D                       Pig  ----------------------------------------------------------------------
B D                    Alpaca  ----------------------------------------------------------------------
               Bactrian camel  ----------------------------------------------------------------------
B D                   Dolphin  ----------------------------------------------------------------------
                 Killer whale  ----------------------------------------------------------------------
B D                       Cow  ----------------------------------------------------------------------
B D                     Horse  -----------------------------------------tactgg-----------------------
B D          White rhinoceros  -----------------------------------------tactga-----------------------
B D                       Cat  -----------------------------------------tgctgg-----------------------
B D                       Dog  -----------------------------------------tggtgg-----------------------
B D                   Ferret   -----------------------------------------tgtggg-----------------------
B D                     Panda  -----------------------------------------cgctag-----------------------
                 Weddell seal  -----------------------------------------tgctgg-----------------------
B D                  Hedgehog  ----------------------------------------------------------------------
B D                  Elephant  -------------------------------------------taagcacatgctcac------------
          Cape elephant shrew  -------------------------------------------t---cctattccccc------------
B D                   Manatee  -------------------------------------------taagcacgtgctgac------------
             Cape golden mole  -------------------------------------------ctaccaagtaccccg------------
                     Aardvark  -------------------------------------------ttagcaggtgctcac------------
B D                 Armadillo  -------------------------------------------taagagactgctcaa------------
B D                   Opossum  ----------------------------------------------------------------------
B D           Tasmanian devil  ----------------------------------------------------------------------
B D                  Platypus  ----------------------------------------------------------------------
  D               Rock pigeon  ----------------------------------------------------------------------
  D              Saker falcon  ----------------------------------------------------------------------
  D          Peregrine falcon  ----------------------------------------------------------------------
  D       Collared flycatcher  ----------------------------------------------------------------------
  D    White-throated sparrow  ----------------------------------------------------------------------
B D       Medium ground finch  ----------------------------------------------------------------------
B D               Zebra finch  ----------------------------------------------------------------------
B D                Budgerigar  ----------------------------------------------------------------------
  D                    Parrot  ----------------------------------------------------------------------
  D              Mallard duck  ----------------------------------------------------------------------
B D                   Chicken  ----------------------------------------------------------------------
B D                    Turkey  ----------------------------------------------------------------------
B D        American alligator  ----------------------------------------------------------------------
  D            Painted turtle  ----------------------------------------------------------------------
  D  Chinese softshell turtle  ----------------------------------------------------------------------
  D    Spiny softshell turtle  ----------------------------------------------------------------------
B D             X. tropicalis  -----------------------------------------------------ccccctgattct-----
B D                Coelacanth  --------------------------------------------------------------cctgaggg
B D              Nile tilapia  -gtggaggtgatgtgaccggca-tgccaagcggc------------------------------------
B D                    Medaka  -aacaaagcgccgtgaaccccg-tcttcatccac------------------------------------
           Southern platyfish  acaccaggctctgtgtgacct-------------------------------------------------
B D              Atlantic cod  ccctccctccctctgtctctc-------------------------------------------------
B D                 Zebrafish  ccatccttccttctttctttccctcctcctttcc------------------------------------
     Mexican tetra (cavefish)  tcactcatccctgtttctttcactgatctctttc------------------------------------
                  Spotted gar  gctggcagcgctggctgcacttcaggtgcttggc------------------------------------
B D                   Lamprey  ----------------------------------------------------------------------
B D                Guinea pig  ======================================================================
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D               Stickleback  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
          Tibetan ground jay  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
  D           Green seaturtle  ======================================================================
  D             Scarlet macaw  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                    Lizard  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
B D                    Tenrec  ======================================================================
B D                   Megabat  ----------------------------------------------------------------------
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================

                        Human  -----atgcctgggcccctg----------------------c----------ctggcc--------gc-
                        Chimp  -----atgcctgggcccctg----------------------c----------ctggcc--------gc-
                      Gorilla  -----atgcctgggcccctg----------------------c----------ctggcc--------gc-
                    Orangutan  -----atgcatgggcccctg----------------------c----------ctggcc--------gc-
                       Gibbon  -----atgcctgggcccctg----------------------c----------ctggcc--------gc-
                       Rhesus  -----atgcctgggcccctg----------------------c----------ctggcc--------gc-
          Crab-eating macaque  -----atgcctgggcccctg----------------------c----------ctggcc--------gc-
                       Baboon  -----atgcctgggcccctg----------------------c----------ctggcc--------gc-
                 Green monkey  -----atgcctgggcccctg----------------------c----------ctggcc--------gc-
                     Marmoset  ----------------cgtg----------------------t----------ctggcc--------tc-
              Squirrel monkey  ----------------catg----------------------c----------cgggcc--------tc-
                     Bushbaby  -----aggccggggctgcaa----------------------c----------ct-gtg--------tt-
           Chinese tree shrew  -----gagtctctgtctctgacactttgccccctcgttcttcc----------ctaggc--------cc-
                     Squirrel  -----gagtctgggcacctg----------------------c----------caggcc--------ac-
             Brush-tailed rat  -----aggtcttggttcagc----------------------c----------cagggc--------gc-
                       Rabbit  -----------cacccctgc----------------------a----------ggggcc--------g--
                         Pika  -----------ccctccttc----------------------t----------tgggtc--------ag-
                          Pig  ---------tagggatgaaa----------------------a----------ccatgc--------ca-
                       Alpaca  -----------------------------------------------------ctctcc--------cc-
               Bactrian camel  -----------------------------------------------------ctctcc--------cc-
                      Dolphin  -----------------------------------------------------ctctcc--------cc-
                 Killer whale  -----------------------------------------------------ctctcc--------cc-
                          Cow  -----------------------------------------------------ctctcc--------cc-
                        Horse  ----agaggctggactccgg----------------------c----------ctcact--------cc-
             White rhinoceros  ----at-ggctggactc-----------------------------------------------------
                          Cat  ----aatggctgggctcctg----------------------c----------ctcacc--------tc-
                          Dog  ----actggctggggttcca----------------------c----------ctcacc--------ct-
                      Ferret   ----gatggctgggcccctg----------------------c----------ctgcct--------ccg
                        Panda  ----aatggctgggctcccg----------------------c----------ctcacc--------cc-
                 Weddell seal  ----aatggctgggctccca----------------------c----------ctcact--------cc-
                     Hedgehog  ---------cagggctcaga----------------------g----------gtgacc--------tc-
                     Elephant  ----aaatcctgggtacctg----------------------c----------cttgag--------tc-
          Cape elephant shrew  ----acctccagggagcctg----------------------ccagctcggctcctggg--------gc-
                      Manatee  ----aactcccaggtttctg----------------------c----------ctcgac--------tc-
             Cape golden mole  ----a--tcccagagtcctg----------------------c----------ctggat--------tc-
                     Aardvark  ----ag-ttctggggtcctg----------------------c----------cttggc--------tc-
                    Armadillo  ----aatggccgggcctctg----------------------c----------ttcgtc--------ct-
                      Opossum  --------------tctctg----------------------t----------ctcccc--------tc-
              Tasmanian devil  ------------gatcccgg----------------------c----------cttccc--------gc-
                     Platypus  ---------------tcctg----------------------c----------tccgcc--------ac-
                  Rock pigeon  ----------ttcccacgtg-----------------ccaatc----------aaccct--------tc-
                 Saker falcon  ----------tcccatcc------------------------c----------atccca--------tc-
             Peregrine falcon  ----------tcccatcc------------------------c----------atccca--------tc-
          Collared flycatcher  ----------tgccaggccg-------------------aggg----------tgcccc--------at-
       White-throated sparrow  ------------------------------------------c----------atccca--------gt-
          Medium ground finch  ----------tgtca---------------------------c----------ctctct--------gt-
                  Zebra finch  ------------------------------------------c----------atcccc--------gt-
                   Budgerigar  ----------tgg-----------------------------g----------gtcacc--------tt-
                       Parrot  ------------------------------------------------------tcact--------gt-
                 Mallard duck  ------------------------------------------c----------atccctggtgacacct-
                      Chicken  ------------------------------------------c----------atccct--------ct-
                       Turkey  ------------------------------------------t----------gtccct--------ct-
           American alligator  ----------tccgtccctt----------------------t----------tgcccc--------gc-
               Painted turtle  ----------ggttctcagt-----------------ccaagt----------ttcctt--------gc-
     Chinese softshell turtle  ----------------------------------------tgc----------ctgtct--------gt-
       Spiny softshell turtle  ----------tgttc----------------------ccttgt----------ctgtcc--------ct-
                X. tropicalis  ----actgtctccatccttc----------------------c----------cctgat--------tc-
                   Coelacanth  agtggatgtttggaattttggt--------------------c----------ctggt------------
                 Nile tilapia  ----------------------------------------------------------------------
                       Medaka  ----------------------------------------------------------------------
           Southern platyfish  ----------------------------------------------------------------------
                 Atlantic cod  ----------------------------------------------------------------------
                    Zebrafish  ----------------------------------------------------------------------
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
                  Spotted gar  ----------------------------------------------------------------------
                      Lamprey  ----catccccgtcctcctgtctcgag---------------c----------ctctcc--------tc-
                   Guinea pig  ======================================================================
                        Shrew  ======================================================================
               Golden hamster  ======================================================================
                  Stickleback  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
           Tibetan ground jay  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
              Green seaturtle  ======================================================================
                Scarlet macaw  ======================================================================
                   Chinchilla  ======================================================================
               Naked mole-rat  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Lizard  ======================================================================
              Chinese hamster  ======================================================================
                 Prairie vole  ======================================================================
                       Tenrec  ======================================================================
                      Megabat  ----------------------------------------------------------------------
                          Rat  ======================================================================
                        Mouse  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Pacific walrus  ======================================================================
             Black flying-fox  ======================================================================
         David's myotis (bat)  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================

                        Human  --------cccc-----ac----
                        Chimp  --------cccc-----ac----
                      Gorilla  --------cccc-----ac----
                    Orangutan  --------cccg-----ac----
                       Gibbon  --------ccc------ac----
                       Rhesus  --------cccc-----at----
          Crab-eating macaque  --------cccc-----at----
                       Baboon  --------cccc-----at----
                 Green monkey  --------cccc-----at----
                     Marmoset  --------gccc-----ac----
              Squirrel monkey  --------cccc-----ac----
                     Bushbaby  --------ccaa-----at----
           Chinese tree shrew  --------cacg-----at----
                     Squirrel  -----------------ac----
             Brush-tailed rat  -----------------tt----
                       Rabbit  ------------------t----
                         Pika  -----------------tt----
                          Pig  -----------------cg----
                       Alpaca  -----------------ag----
               Bactrian camel  -----------------ag----
                      Dolphin  -----------------ag----
                 Killer whale  -----------------ag----
                          Cow  -----------------ag----
                        Horse  ---cc-----gc-----at----
             White rhinoceros  -----------c-----at----
                          Cat  ---cc----ccc-----cg----
                          Dog  ---gc---tcct-----ag----
                      Ferret   cctccc--tgct-----ag----
                        Panda  ---ccc--accc-----ag----
                 Weddell seal  ---cc----gct-----ag----
                     Hedgehog  ----------ct-----ag----
                     Elephant  --------cccc-----c-----
          Cape elephant shrew  --------cctg-----t-----
                      Manatee  --------ccca-----------
             Cape golden mole  --------cccc-----------
                     Aardvark  --------cccc-----a-----
                    Armadillo  --------accc-----ag----
                      Opossum  ---------tcc-----ct----
              Tasmanian devil  ---------ccg-----at----
                     Platypus  -----a--tccc-----cc----
                  Rock pigeon  --------ccttgca--ca----
                 Saker falcon  --------ccat-----cc----
             Peregrine falcon  --------ccat-----cc----
          Collared flycatcher  --------ctcc-----ca----
       White-throated sparrow  --------ctct-----ct----
          Medium ground finch  ---gtcacctct-----c-----
                  Zebra finch  --------tcct-----cc----
                   Budgerigar  --------ctc------------
                       Parrot  --------ccc------------
                 Mallard duck  --------ccttgtcacct----
                      Chicken  --------ccat-----cc----
                       Turkey  --------ccctg----tc----
           American alligator  --------cccc-----ct----
               Painted turtle  --------ccag-----ct----
     Chinese softshell turtle  --------ccat-----ct----
       Spiny softshell turtle  --------ccac-----cc----
                X. tropicalis  --------ttc------------
                   Coelacanth  -----------------------
                 Nile tilapia  -----------------------
                       Medaka  -----------------------
           Southern platyfish  -----------------------
                 Atlantic cod  -----------------------
                    Zebrafish  -----------------------
     Mexican tetra (cavefish)  -----------------------
                  Spotted gar  -----------------------
                      Lamprey  --------cctc-----tctctc
                   Guinea pig  =======================
                        Shrew  =======================
               Golden hamster  =======================
                  Stickleback  =======================
       Yellowbelly pufferfish  =======================
                         Fugu  =======================
                    Tetraodon  =======================
           Tibetan ground jay  =======================
          Pundamilia nyererei  =======================
                  Zebra mbuna  =======================
        Burton's mouthbreeder  =======================
          Princess of Burundi  =======================
              Green seaturtle  =======================
                Scarlet macaw  =======================
                   Chinchilla  =======================
               Naked mole-rat  =======================
       Lesser Egyptian jerboa  =======================
                       Lizard  =======================
              Chinese hamster  =======================
                 Prairie vole  =======================
                       Tenrec  =======================
                      Megabat  -----------------------
                          Rat  =======================
                        Mouse  =======================
                Domestic goat  =======================
                        Sheep  =======================
             Tibetan antelope  =======================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNN
               Pacific walrus  =======================
             Black flying-fox  =======================
         David's myotis (bat)  =======================
                Big brown bat  =======================
                     Microbat  =======================

Inserts between block 9 and 10 in window
  D              Rock pigeon 17bp
  D             Saker falcon 16bp
  D         Peregrine falcon 16bp
  D      Collared flycatcher 18bp
  D   White-throated sparrow 17bp
B D      Medium ground finch 17bp
B D              Zebra finch 14bp
B D               Budgerigar 14bp
  D                   Parrot 20bp
  D             Mallard duck 29bp
B D                  Chicken 15bp
B D                   Turkey 19bp
B D       American alligator 47842bp
  D           Painted turtle 24bp
  D Chinese softshell turtle 6bp
  D   Spiny softshell turtle 8bp
B D             Nile tilapia 3bp
B D                   Medaka 10bp
          Southern platyfish 3bp
B D             Atlantic cod 3bp
B D                Zebrafish 3bp
    Mexican tetra (cavefish) 6bp
                 Spotted gar 17bp

Alignment block 10 of 652 in window, 123908387 - 123908409, 23 bps 
B D                     Human  act---------g----------------------------------catcca---------------tg
B D                     Chimp  act---------g----------------------------------catcca---------------tg
B D                   Gorilla  act---------g----------------------------------catcca---------------tg
B D                 Orangutan  act---------g----------------------------------catcca---------------tg
B D                    Gibbon  act---------g----------------------------------catcca---------------tg
B D                    Rhesus  act---------g----------------------------------cttccg---------------tg
B D       Crab-eating macaque  act---------g----------------------------------cttccg---------------tg
B D                    Baboon  act---------g----------------------------------cttccg---------------tg
B D              Green monkey  act---------g----------------------------------cttcca---------------tg
B D                  Marmoset  gct---------g----------------------------------cttcca---------------cg
B D           Squirrel monkey  gct---------g----------------------------------cttcc------------------
B D                  Bushbaby  gct---------a----------------------------------catcca---------------aa
           Chinese tree shrew  gctggtgtctggg----------------------------------ctccca---------------ca
B D                  Squirrel  ctt---------g----------------------------------tttcca---------------gg
             Brush-tailed rat  tct---------g----------------------------------ccttgg---------------g-
B D                    Rabbit  gct---------c---------------------------------------------------------
B D                      Pika  gct---------t----------------------------------ttcaca---------------g-
B D                       Pig  gca---------gggacaacactggat------------gcttaacccgctga---------------gc
B D                    Alpaca  gct---------g----------------------------------ctccgt---------------gc
               Bactrian camel  gct---------g----------------------------------ctccgt---------------gc
B D                   Dolphin  gcc---------g----------------------------------ctccct---------------gc
                 Killer whale  gcc---------g----------------------------------ctccct---------------gc
B D                       Cow  gct---------g----------------------------------ctcctt---------------gc
B D                     Horse  gcc---------g----------------------------------ctccat---------------gc
B D          White rhinoceros  gcc---------g----------------------------------ctccat---------------gc
B D                       Cat  gct---------g----------------------------------ccctct---------------gc
B D                       Dog  act---------g----------------------------------tcctgt---------------gc
B D                   Ferret   gt--------------------------------------------------c---------------ac
B D                     Panda  gct---------g----------------------------------ccctac---------------ac
                 Weddell seal  gct---------g----------------------------------ccctat---------------gc
B D                  Hedgehog  gctcagctgta-g----------------------------------ctgccc---------------tt
B D                  Elephant  tct---------g----------------------------------cctcct---------------tg
          Cape elephant shrew  gct---------g----------------------------------tccccc---------------ca
B D                   Manatee  ----------------------------------------------------------------------
                     Aardvark  cct---------g----------------------------------cctccc---------------tg
B D                 Armadillo  gct---------g----------------------------------tttcca---------------tg
B D                   Opossum  gtt---------g----------------------------------gccctc---------------gg
B D           Tasmanian devil  gcc---------g----------------------------------gcctt------------------
B D                  Platypus  gtt---------g----------------------------------cccccg---------------gg
  D               Rock pigeon  -------------------------------------------gtgcccatca---------------cc
  D              Saker falcon  -------------------------------------------gacccatcca---------------tc
  D          Peregrine falcon  -------------------------------------------gacccatcca---------------tc
  D       Collared flycatcher  -------------------------------------------ggaacctgcc---------------tg
  D    White-throated sparrow  -------------------------------------------tcccagttta---------------tc
B D       Medium ground finch  -------------------------------------------tccgtgtccc---------------ct
B D               Zebra finch  -------------------------------------------ttcccgttcc---------------tc
B D                Budgerigar  -------------------------------------------gatgtccccc---------------ac
  D                    Parrot  -------------------------------------------tgcaccccca---------------cg
  D              Mallard duck  -------------------------------------------ttgtcacct------------------
B D                   Chicken  -------------------------------------------tttctatcc------------------
B D                    Turkey  -------------------------------------------tccccatcc------------------
B D        American alligator  -------------------------------------------ttctctc--------------------
  D            Painted turtle  -------------------------------------------tatccaatct---------------ca
  D  Chinese softshell turtle  -------------------------------------------catccacccg---------------ct
  D    Spiny softshell turtle  -------------------------------------------catctcccca---------------ag
B D             X. tropicalis  ---------------------------------------tctgtctccatcct---------------tc
B D                Coelacanth  ---------------------ctggtttc----------gttctggtcattat-----------------
B D              Nile tilapia  tca---------t----------------------------------tattct-----------gcca--
B D                    Medaka  gct---------t----------------------------------cctcct-------------ca--
           Southern platyfish  tct---------g----------------------------------cttctt-----------------
B D              Atlantic cod  atc---------c----------------------------------attcct-----------------
B D                 Zebrafish  act---------t----------------------------------cttcct-----------------
     Mexican tetra (cavefish)  act---------t----------------------------------attcctgtctcttttattaat--
                  Spotted gar  ggc---------a----------------------------------ggtctt-----------------
B D                   Lamprey  --------------------cctgtgtccattgtccccgtatatttgcgc--------------------
B D                Guinea pig  ======================================================================
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D               Stickleback  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
          Tibetan ground jay  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
  D           Green seaturtle  ======================================================================
  D             Scarlet macaw  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                    Lizard  ======================================================================
            Cape golden mole  ----------------------------------------------------------------------
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
B D                    Tenrec  ======================================================================
B D                   Megabat  ----------------------------------------------------------------------
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================

                        Human  cc-------ct----ccggga----------c
                        Chimp  cc-------ct----ccggga----------c
                      Gorilla  cc-------ct----ccggga----------c
                    Orangutan  cc-------ct----ccaggg----------c
                       Gibbon  cc-------ct----ccggga----------c
                       Rhesus  tc-------ct----ctgggg----------c
          Crab-eating macaque  tc-------ct----ctgggg----------c
                       Baboon  tc-------ct----ctgggg----------c
                 Green monkey  tc-------ct----ctgggg----------c
                     Marmoset  ca-------ct----ctgggg----------c
              Squirrel monkey  --------------------------------
                     Bushbaby  ca-------ct----ttggag----------c
           Chinese tree shrew  gc-------ct----ccgggg----------c
                     Squirrel  cc-------ct----cctgaggcccatgcccc
             Brush-tailed rat  ----------t----tcggaa----atgcctc
                       Rabbit  ---------------------------acccc
                         Pika  ----------c----cctaag------atccc
                          Pig  ca-------cc----agggag----------c
                       Alpaca  cc-------tt----gggggg----------c
               Bactrian camel  cc-------tc----aggggg----------c
                      Dolphin  cc-------tc----cggggg----------c
                 Killer whale  cc-------tc----cggggg----------c
                          Cow  cc-------ttggtgggggag----------g
                        Horse  cc-------cg----tggggg----------c
             White rhinoceros  cc-------gg----tggggg----------c
                          Cat  cc-------tt----ctgggg----------c
                          Dog  cc-------tt----cagggg----------c
                      Ferret   gt-------tc----aggggg----------t
                        Panda  cc-------tt----cagggg----------c
                 Weddell seal  cc-------tt----cagggg----------c
                     Hedgehog  ct-------tt----tggctg----------c
                     Elephant  cc-------tt----ccaggg----------a
          Cape elephant shrew  cc--------t----ccaggg----------c
                      Manatee  ----------t----ccaggg----------a
                     Aardvark  cc-------ct----ccaggg----------a
                    Armadillo  tc-------ct----ccacgg----------c
                      Opossum  ag-------cc----ccgcag----------t
              Tasmanian devil  ----------c----ctgcgg----------c
                     Platypus  cc-------cg----ctgtct----------c
                  Rock pigeon  ct------------------------------
                 Saker falcon  cc------------------------------
             Peregrine falcon  cc------------------------------
          Collared flycatcher  ac------------------------------
       White-throated sparrow  ct------------------------------
          Medium ground finch  cc------------------------------
                  Zebra finch  ct------------------------------
                   Budgerigar  at------------------------------
                       Parrot  ct------------------------------
                 Mallard duck  --------------------------------
                      Chicken  --------------------------------
                       Turkey  --------------------------------
           American alligator  --------------------------------
               Painted turtle  gtc-----------------------------
     Chinese softshell turtle  gcc-----------------------------
       Spiny softshell turtle  gcc-----------------------------
                X. tropicalis  ccctgattctt---------------------
                   Coelacanth  --------------------------------
                 Nile tilapia  --------------------------------
                       Medaka  --------------------------------
           Southern platyfish  --------------------------------
                 Atlantic cod  --------------------------------
                    Zebrafish  --------------------------------
     Mexican tetra (cavefish)  --------------------------------
                  Spotted gar  --------------------------------
                      Lamprey  --------------------------------
                   Guinea pig  ================================
                        Shrew  ================================
               Golden hamster  ================================
                  Stickleback  ================================
       Yellowbelly pufferfish  ================================
                         Fugu  ================================
                    Tetraodon  ================================
           Tibetan ground jay  ================================
          Pundamilia nyererei  ================================
                  Zebra mbuna  ================================
        Burton's mouthbreeder  ================================
          Princess of Burundi  ================================
              Green seaturtle  ================================
                Scarlet macaw  ================================
                   Chinchilla  ================================
               Naked mole-rat  ================================
       Lesser Egyptian jerboa  ================================
                       Lizard  ================================
             Cape golden mole  --------------------------------
              Chinese hamster  ================================
                 Prairie vole  ================================
                       Tenrec  ================================
                      Megabat  --------------------------------
                          Rat  ================================
                        Mouse  ================================
                Domestic goat  ================================
                        Sheep  ================================
             Tibetan antelope  ================================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Pacific walrus  ================================
             Black flying-fox  ================================
         David's myotis (bat)  ================================
                Big brown bat  ================================
                     Microbat  ================================

Inserts between block 10 and 11 in window
  D              Rock pigeon 6bp
  D             Saker falcon 8bp
  D         Peregrine falcon 8bp
  D   White-throated sparrow 14bp
B D      Medium ground finch 15bp
B D              Zebra finch 21bp
B D               Budgerigar 39bp
  D                   Parrot 42bp
B D       American alligator 5bp
  D           Painted turtle 10bp
  D Chinese softshell turtle 3bp
  D   Spiny softshell turtle 1bp
                 Spotted gar 9bp

Alignment block 11 of 652 in window, 123908410 - 123908419, 10 bps 
B D                     Human  c--tctg--------t------ctcc
B D                     Chimp  c--tctg--------t------ctcc
B D                   Gorilla  c--tctg--------t------ctcc
B D                 Orangutan  t--tctg--------t------ctcc
B D                    Gibbon  c--tctg--------t------ctcc
B D                    Rhesus  c--tctg--------t------ctcc
B D       Crab-eating macaque  c--tctg--------t------ctcc
B D                    Baboon  c--tctg--------t------ctcc
B D              Green monkey  c--tctg--------t------ctcc
B D                  Marmoset  c--tctg--------t------ctcc
B D           Squirrel monkey  ----ctg--------c------ctcc
B D                  Bushbaby  c--tcca--------t------ttcc
           Chinese tree shrew  c--tc----------t------cctc
B D                  Squirrel  t--cctgctcgtccct------ctcc
             Brush-tailed rat  c--tcgg--------t------ctcc
B D                    Rabbit  c--gcgc--------t------tctc
B D                      Pika  c--cagg--------t------gctc
B D                       Pig  t--cc---------------------
B D                    Alpaca  t--ct-gtca-----c------ccct
               Bactrian camel  t--tt-gtca-----c------ccct
B D                   Dolphin  t--ct---------------------
                 Killer whale  t--ct---------------------
B D                       Cow  t--ct--tca----------------
B D                     Horse  c--tctggga-----g------ctcc
B D          White rhinoceros  c--tctgtca-----t------ctcc
B D                       Cat  c--tctgtca-----t------ctct
B D                       Dog  c--tctgtca-----t------ctcc
B D                   Ferret   c--tctctca-----c------ctcc
B D                     Panda  c--tctgttg-----t------gccc
                 Weddell seal  t--gctgtca-----t------ctct
B D                  Hedgehog  t--tctg-------------------
B D                  Elephant  g--tccatca-----t------ctct
          Cape elephant shrew  g--tgtgtcc-----a------ctct
B D                   Manatee  g--cccatca-----tc---agctcc
             Cape golden mole  ------atcc-----t----acctcc
                     Aardvark  g--cccgcca-----t------ctct
B D                 Armadillo  c--tctgtca-----t------ctcc
B D                   Opossum  c--cccatca-----c------gtca
B D           Tasmanian devil  cttcccgcct-----g------atcc
B D                  Platypus  c--ccgg--------c------ctcc
  D               Rock pigeon  ----------------------ctca
  D              Mallard duck  ----------------------cgtg
B D                   Chicken  ----------------------tgct
B D                    Turkey  ----------------------ttct
  D            Painted turtle  ----------------------ctac
  D  Chinese softshell turtle  ----------------------ctgc
  D    Spiny softshell turtle  ----------------------ctgt
B D             X. tropicalis  ----------------ctctgtctcc
B D                Coelacanth  ----------------ctgtgtctcc
B D              Nile tilapia  ----------------------gcga
B D                    Medaka  ----------------------ccgt
           Southern platyfish  ----------------------cctt
B D              Atlantic cod  ----------------------ccct
B D                 Zebrafish  -----------------------tct
     Mexican tetra (cavefish)  ----------------------ccct
B D                   Lamprey  ----------------ctctgccccc
B D                Guinea pig  ==========================
B D                     Shrew  ==========================
              Golden hamster  ==========================
                 Spotted gar  ==========================
B D               Stickleback  ==========================
      Yellowbelly pufferfish  ==========================
B D                      Fugu  ==========================
B D                 Tetraodon  ==========================
          Tibetan ground jay  ==========================
B D               Zebra finch  ==========================
  D    White-throated sparrow  ==========================
         Pundamilia nyererei  ==========================
                 Zebra mbuna  ==========================
       Burton's mouthbreeder  ==========================
         Princess of Burundi  ==========================
  D           Green seaturtle  ==========================
B D        American alligator  ==========================
  D             Scarlet macaw  ==========================
B D                Budgerigar  ==========================
                  Chinchilla  ==========================
B D            Naked mole-rat  ==========================
      Lesser Egyptian jerboa  ==========================
  D       Collared flycatcher  ==========================
B D       Medium ground finch  ==========================
B D                    Lizard  ==========================
  D          Peregrine falcon  ==========================
  D              Saker falcon  ==========================
  D                    Parrot  ==========================
B D           Chinese hamster  ==========================
                Prairie vole  ==========================
B D                    Tenrec  ==========================
B D                   Megabat  --------------------------
B D                       Rat  ==========================
B D                     Mouse  ==========================
               Domestic goat  ==========================
B D                     Sheep  ==========================
            Tibetan antelope  ==========================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ==========================
            Black flying-fox  ==========================
        David's myotis (bat)  ==========================
               Big brown bat  ==========================
B D                  Microbat  ==========================

Inserts between block 11 and 12 in window
B D                 Hedgehog 239bp
  D              Rock pigeon 7bp
  D             Mallard duck 6bp
B D                  Chicken 6bp
B D                   Turkey 6bp
  D           Painted turtle 7bp
  D Chinese softshell turtle 5bp
  D   Spiny softshell turtle 5bp
B D             Nile tilapia 32bp
B D                   Medaka 26bp
          Southern platyfish 41bp
B D             Atlantic cod 10bp
B D                Zebrafish 15bp
    Mexican tetra (cavefish) 67bp

Alignment block 12 of 652 in window, 123908420 - 123908422, 3 bps 
B D                     Human  -tgc
B D                     Chimp  -tgc
B D                   Gorilla  -tgc
B D                 Orangutan  -tgc
B D                    Gibbon  -tgc
B D                    Rhesus  -tgc
B D       Crab-eating macaque  -tgc
B D                    Baboon  -tgc
B D              Green monkey  -tgc
B D                  Marmoset  -tgc
B D           Squirrel monkey  -tgc
B D                  Bushbaby  -ttc
           Chinese tree shrew  -tgc
B D                  Squirrel  -cct
             Brush-tailed rat  -tgc
B D                    Rabbit  -cct
B D                      Pika  -aca
B D                    Alpaca  -g-c
               Bactrian camel  -g-c
B D                     Horse  -tgc
B D          White rhinoceros  -tgc
B D                       Cat  -g-c
B D                       Dog  -gcc
B D                   Ferret   -ccc
B D                     Panda  -ccc
                 Weddell seal  -ccc
B D                  Elephant  ---g
B D                   Manatee  ---a
             Cape golden mole  ---a
                     Aardvark  ---g
B D                 Armadillo  -tgt
B D                   Opossum  -ctg
B D           Tasmanian devil  -cgg
B D                  Platypus  -agc
  D              Saker falcon  -cca
  D          Peregrine falcon  -cca
  D    White-throated sparrow  --ta
B D       Medium ground finch  --ca
B D               Zebra finch  --ct
  D              Mallard duck  -atc
B D                   Chicken  -ttc
B D                    Turkey  -ata
B D        American alligator  -cct
  D            Painted turtle  --ca
  D  Chinese softshell turtle  --ca
  D    Spiny softshell turtle  --tg
B D             X. tropicalis  ---a
B D                Coelacanth  -ttc
B D                   Lamprey  atc-
B D                  Hedgehog  ====
B D                Guinea pig  ====
B D                     Shrew  ====
              Golden hamster  ====
B D              Atlantic cod  ====
                 Spotted gar  ====
B D               Stickleback  ====
          Southern platyfish  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
B D                 Tetraodon  ====
          Tibetan ground jay  ====
    Mexican tetra (cavefish)  ====
B D                 Zebrafish  ====
B D                    Medaka  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
  D           Green seaturtle  ====
  D             Scarlet macaw  ====
B D                Budgerigar  ====
                  Chinchilla  ====
B D            Naked mole-rat  ====
      Lesser Egyptian jerboa  ====
  D               Rock pigeon  ====
  D       Collared flycatcher  ====
B D                    Lizard  ====
  D                    Parrot  ====
         Cape elephant shrew  ----
B D           Chinese hamster  ====
                Prairie vole  ====
B D                    Tenrec  ====
B D                   Megabat  ----
B D                       Pig  ----
B D                   Dolphin  ----
B D                       Rat  ====
B D                     Mouse  ====
               Domestic goat  ====
B D                     Sheep  ====
            Tibetan antelope  ====
             Star-nosed mole  NNNN
              Pacific walrus  ====
            Black flying-fox  ====
        David's myotis (bat)  ====
               Big brown bat  ====
B D                  Microbat  ====
B D                       Cow  ----
                Killer whale  ----

Inserts between block 12 and 13 in window
B D               Coelacanth 6749bp

Alignment block 13 of 652 in window, 123908423 - 123908424, 2 bps 
B D                     Human  tc
B D                     Chimp  tc
B D                   Gorilla  tc
B D                 Orangutan  tc
B D                    Gibbon  tc
B D                    Rhesus  tc
B D       Crab-eating macaque  tc
B D                    Baboon  cc
B D              Green monkey  tc
B D                  Marmoset  cc
B D           Squirrel monkey  cc
B D                  Bushbaby  tc
           Chinese tree shrew  cc
B D                  Squirrel  cc
             Brush-tailed rat  cc
B D                    Rabbit  cc
B D                      Pika  cc
B D                    Alpaca  tc
               Bactrian camel  tc
B D                       Cow  -t
B D                     Horse  tc
B D          White rhinoceros  tc
B D                       Cat  tc
B D                       Dog  tc
B D                   Ferret   tc
B D                     Panda  tc
                 Weddell seal  tc
B D                  Elephant  gc
          Cape elephant shrew  gc
B D                   Manatee  gc
             Cape golden mole  gc
                     Aardvark  ac
B D                 Armadillo  gc
B D                   Opossum  cg
B D           Tasmanian devil  cc
B D                  Platypus  tc
  D               Rock pigeon  -c
  D              Saker falcon  tc
  D          Peregrine falcon  tc
  D       Collared flycatcher  ct
  D    White-throated sparrow  cc
B D       Medium ground finch  cc
B D               Zebra finch  cc
  D              Mallard duck  cc
B D                   Chicken  tc
B D                    Turkey  cc
B D        American alligator  tc
  D            Painted turtle  gt
  D  Chinese softshell turtle  tt
  D    Spiny softshell turtle  tt
B D             X. tropicalis  tc
B D                   Lamprey  tc
B D                  Hedgehog  ==
B D                Guinea pig  ==
B D                Coelacanth  ==
B D                     Shrew  ==
              Golden hamster  ==
B D              Atlantic cod  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
          Tibetan ground jay  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D           Green seaturtle  ==
  D             Scarlet macaw  ==
B D                Budgerigar  ==
                  Chinchilla  ==
B D            Naked mole-rat  ==
      Lesser Egyptian jerboa  ==
B D                    Lizard  ==
  D                    Parrot  ==
B D           Chinese hamster  ==
                Prairie vole  ==
B D                    Tenrec  ==
B D                   Megabat  --
B D                       Pig  --
B D                   Dolphin  --
B D                       Rat  ==
B D                     Mouse  ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
             Star-nosed mole  NN
              Pacific walrus  ==
            Black flying-fox  ==
        David's myotis (bat)  ==
               Big brown bat  ==
B D                  Microbat  ==
                Killer whale  --

Inserts between block 13 and 14 in window
  D             Mallard duck 11bp
B D                  Chicken 5927bp
B D                   Turkey 14bp
  D           Painted turtle 1bp
  D Chinese softshell turtle 1bp
  D   Spiny softshell turtle 1bp
B D            X. tropicalis 1bp

Alignment block 14 of 652 in window, 123908425 - 123908426, 2 bps 
B D                     Human  t--t-
B D                     Chimp  t--t-
B D                   Gorilla  t--t-
B D                 Orangutan  t--t-
B D                    Gibbon  t--t-
B D                    Rhesus  t--t-
B D       Crab-eating macaque  t--t-
B D                    Baboon  t--t-
B D              Green monkey  t--t-
B D                  Marmoset  t--t-
B D           Squirrel monkey  t--t-
B D                  Bushbaby  t--t-
           Chinese tree shrew  t--c-
B D                  Squirrel  tggg-
             Brush-tailed rat  tgag-
B D                    Rabbit  t--g-
B D                      Pika  t--g-
B D                    Alpaca  t--t-
               Bactrian camel  t--t-
B D                       Cow  t--t-
B D                     Horse  c--t-
B D          White rhinoceros  t--t-
B D                       Cat  t--t-
B D                       Dog  t--t-
B D                   Ferret   t--t-
B D                     Panda  t--t-
                 Weddell seal  t--t-
B D                  Elephant  t--t-
          Cape elephant shrew  c--c-
B D                   Manatee  t--g-
             Cape golden mole  t--c-
                     Aardvark  t--t-
B D                 Armadillo  t--t-
B D                   Opossum  g--t-
B D           Tasmanian devil  t--t-
B D                  Platypus  t--t-
  D               Rock pigeon  ---c-
  D              Saker falcon  ---c-
  D          Peregrine falcon  ---c-
  D       Collared flycatcher  ---g-
  D    White-throated sparrow  ---c-
B D       Medium ground finch  ---g-
B D               Zebra finch  ---c-
  D              Mallard duck  ---t-
B D                    Turkey  ---a-
B D             X. tropicalis  t--t-
B D                   Lamprey  ---tg
B D                  Hedgehog  =====
B D                Guinea pig  =====
B D                Coelacanth  =====
  D    Spiny softshell turtle  =====
B D                     Shrew  =====
              Golden hamster  =====
B D              Atlantic cod  =====
                 Spotted gar  =====
B D               Stickleback  =====
          Southern platyfish  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                 Tetraodon  =====
B D                   Chicken  =====
          Tibetan ground jay  =====
    Mexican tetra (cavefish)  =====
B D                 Zebrafish  =====
B D                    Medaka  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D              Nile tilapia  =====
  D            Painted turtle  =====
  D           Green seaturtle  =====
B D        American alligator  -----
  D             Scarlet macaw  =====
B D                Budgerigar  =====
                  Chinchilla  =====
B D            Naked mole-rat  =====
      Lesser Egyptian jerboa  =====
B D                    Lizard  =====
  D                    Parrot  =====
B D           Chinese hamster  =====
                Prairie vole  =====
B D                    Tenrec  =====
B D                   Megabat  -----
B D                       Pig  -----
  D  Chinese softshell turtle  =====
B D                   Dolphin  -----
B D                       Rat  =====
B D                     Mouse  =====
               Domestic goat  =====
B D                     Sheep  =====
            Tibetan antelope  =====
             Star-nosed mole  NNNNN
              Pacific walrus  =====
            Black flying-fox  =====
        David's myotis (bat)  =====
               Big brown bat  =====
B D                  Microbat  =====
                Killer whale  -----

Alignment block 15 of 652 in window, 123908427 - 123908429, 3 bps 
B D                     Human  ctc
B D                     Chimp  ctc
B D                   Gorilla  ctc
B D                 Orangutan  ctc
B D                    Gibbon  ctc
B D                    Rhesus  ctc
B D       Crab-eating macaque  ctc
B D                    Baboon  ctc
B D              Green monkey  ctc
B D                  Marmoset  ctc
B D           Squirrel monkey  ctc
B D                  Bushbaby  ctc
           Chinese tree shrew  cc-
B D                  Squirrel  ctc
             Brush-tailed rat  ctg
B D                    Rabbit  ctc
B D                      Pika  ttg
B D                    Alpaca  ctc
               Bactrian camel  ctc
B D                       Cow  tcc
B D                     Horse  ctc
B D          White rhinoceros  ctc
B D                       Cat  ctc
B D                       Dog  ctc
B D                   Ferret   ccc
B D                     Panda  ctc
                 Weddell seal  ctc
B D                  Elephant  ctt
          Cape elephant shrew  ctg
B D                   Manatee  ctt
             Cape golden mole  cct
                     Aardvark  ccg
B D                 Armadillo  ctc
B D                   Opossum  ccc
B D           Tasmanian devil  ccc
B D                  Platypus  ccc
  D               Rock pigeon  ctt
  D              Saker falcon  cat
  D          Peregrine falcon  cat
  D       Collared flycatcher  tgg
  D    White-throated sparrow  cac
B D       Medium ground finch  cat
B D               Zebra finch  cat
           Tibetan ground jay  -gg
  D              Mallard duck  tgt
B D                    Turkey  cat
B D        American alligator  ctc
  D            Painted turtle  ccc
  D  Chinese softshell turtle  tac
  D    Spiny softshell turtle  tcc
B D             X. tropicalis  ccc
B D                Coelacanth  ctc
B D              Nile tilapia  ctc
B D                    Medaka  ctc
           Southern platyfish  ctc
B D               Stickleback  ctc
B D              Atlantic cod  ctc
B D                 Zebrafish  ttt
     Mexican tetra (cavefish)  ttt
                  Spotted gar  ctc
B D                   Lamprey  ttt
B D                  Hedgehog  ===
B D                Guinea pig  ===
B D                     Shrew  ===
              Golden hamster  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
B D                 Tetraodon  ===
B D                   Chicken  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
  D           Green seaturtle  ===
  D             Scarlet macaw  ===
B D                Budgerigar  ===
                  Chinchilla  ===
B D            Naked mole-rat  ===
      Lesser Egyptian jerboa  ===
B D                    Lizard  ===
  D                    Parrot  ===
B D           Chinese hamster  ===
                Prairie vole  ===
B D                    Tenrec  ===
B D                   Megabat  ---
B D                       Pig  ---
B D                   Dolphin  ---
B D                       Rat  ===
B D                     Mouse  ===
               Domestic goat  ===
B D                     Sheep  ===
            Tibetan antelope  ===
             Star-nosed mole  NNN
              Pacific walrus  ===
            Black flying-fox  ===
        David's myotis (bat)  ===
               Big brown bat  ===
B D                  Microbat  ===
                Killer whale  ---

Inserts between block 15 and 16 in window
  D              Rock pigeon 1bp
  D             Saker falcon 1bp
  D         Peregrine falcon 1bp
  D      Collared flycatcher 1bp
  D   White-throated sparrow 1bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp
          Tibetan ground jay 1bp
  D             Mallard duck 1bp
B D                   Turkey 1bp
B D       American alligator 1bp
  D           Painted turtle 1bp
  D Chinese softshell turtle 1bp
  D   Spiny softshell turtle 1bp

Alignment block 16 of 652 in window, 123908430 - 123908440, 11 bps 
B D                     Human  t-------cctgctt---------tt---------c--------
B D                     Chimp  t-------cctgctt---------tt---------c--------
B D                   Gorilla  t-------cctcctt---------tt---------c--------
B D                 Orangutan  t-------cctcctt---------tt---------c--------
B D                    Gibbon  t-------cctgctt---------tt---------c--------
B D                    Rhesus  t-------c---ctt---------tt---------c--------
B D       Crab-eating macaque  t-------c---ctt---------tt---------c--------
B D                    Baboon  t-------c---ctt---------tt---------c--------
B D              Green monkey  t-------c---ctt---------tt---------c--------
B D                  Marmoset  t-------ccttctt---------tt---------c--------
B D           Squirrel monkey  t-------gc-tcct---------tt---------c--------
B D                  Bushbaby  a-------ccgtctt---------tt---------c--------
           Chinese tree shrew  ------------cct---------tc---------c--------
B D                  Squirrel  c-------tgctcct---------cc---------c--------
             Brush-tailed rat  g-------ctttcgt---------ca---------g--------
B D                    Rabbit  c-------ctcactt---------tc---------g--------
B D                      Pika  ccg---gaccctctg---------tc---------a--------
B D                       Pig  ------------------------tt---------c--------
B D                    Alpaca  t------------cc---------tc---------c--------
               Bactrian camel  t------------cc---------tc---------c--------
B D                   Dolphin  ------------------------tc---------c--------
                 Killer whale  ------------------------tc---------c--------
B D                       Cow  a------------aa---------tc---------c--------
B D                     Horse  ------------------------tt---------c--------
B D          White rhinoceros  t-------tttcctt---------tt---------c--------
B D                       Cat  t-----------ctt---------tc---------t--------
B D                       Dog  t-------cctcctt---------tt---------c--------
B D                   Ferret   t-----------cct---------tt---------c--------
B D                     Panda  t-----------ctt---------tt---------c--------
                 Weddell seal  t-----------ctt---------tt---------c--------
B D                   Megabat  -----------gcttt---g---gtg---------t--------
B D                  Elephant  t-------gcttcct---------tt---------t--------
          Cape elephant shrew  g-------gccccat---------g-------------------
B D                   Manatee  t-------gcttcct---------tt---------c--------
             Cape golden mole  t-------gcttcct---------t----------c--------
                     Aardvark  g-------gcttccc---------tt---------c--------
B D                 Armadillo  t-------cttcctt---------ttcttttgttcc--------
B D                   Opossum  tcc-----ccgccca---------tc------------------
B D           Tasmanian devil  gcccgatgccggcct---------tc------------------
B D                  Platypus  ------------------------cc---------c--------
  D               Rock pigeon  -----------------------------------c--------
  D              Saker falcon  -----------------------------------c--------
  D          Peregrine falcon  -----------------------------------c--------
  D       Collared flycatcher  -----------------------------------c--------
  D    White-throated sparrow  -----------------------------------c--------
B D       Medium ground finch  -----------------------------------c--------
B D               Zebra finch  -----------------------------------c--------
           Tibetan ground jay  -----------------------------------t--------
  D              Mallard duck  -----------------------------------a--------
B D                    Turkey  -----------------------------------t--------
B D        American alligator  -----------------------------------g--------
  D            Painted turtle  -----------------------------------c--------
  D  Chinese softshell turtle  -----------------------------------c--------
  D    Spiny softshell turtle  -----------------------------------c--------
B D             X. tropicalis  ---------------ccctg---att---------c--------
B D                Coelacanth  ----------------accgt--gtt---------c--------
B D              Nile tilapia  --------------------catcgc---------t--------
B D                    Medaka  --------------------cggtag---------c--------
           Southern platyfish  --------------------cacaat---------c--------
B D               Stickleback  --------------------tgttgt---------c--------
B D              Atlantic cod  --------------------tccttc---------c--------
B D                 Zebrafish  --------------------ttcttc---------c--------
     Mexican tetra (cavefish)  --------------------ttcttt---------t--------
                  Spotted gar  --------------------gagttc---------c--------
B D                   Lamprey  ------------------------tc---------ccgtcaccc
B D                  Hedgehog  ============================================
B D                Guinea pig  ============================================
B D                     Shrew  ============================================
              Golden hamster  ============================================
      Yellowbelly pufferfish  ============================================
B D                      Fugu  ============================================
B D                 Tetraodon  ============================================
B D                   Chicken  ============================================
         Pundamilia nyererei  ============================================
                 Zebra mbuna  ============================================
       Burton's mouthbreeder  ============================================
         Princess of Burundi  ============================================
  D           Green seaturtle  ============================================
  D             Scarlet macaw  ============================================
B D                Budgerigar  ============================================
                  Chinchilla  ============================================
B D            Naked mole-rat  ============================================
      Lesser Egyptian jerboa  ============================================
B D                    Lizard  ============================================
  D                    Parrot  ============================================
B D           Chinese hamster  ============================================
                Prairie vole  ============================================
B D                    Tenrec  ============================================
B D                       Rat  ============================================
B D                     Mouse  ============================================
               Domestic goat  ============================================
B D                     Sheep  ============================================
            Tibetan antelope  ============================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ============================================
            Black flying-fox  ============================================
        David's myotis (bat)  ============================================
               Big brown bat  ============================================
B D                  Microbat  ============================================

Inserts between block 16 and 17 in window
B D                  Opossum 4bp
B D          Tasmanian devil 7bp
B D                 Platypus 4bp
  D              Rock pigeon 10bp
  D             Saker falcon 9bp
  D         Peregrine falcon 9bp
  D      Collared flycatcher 10bp
  D   White-throated sparrow 10bp
B D      Medium ground finch 10bp
B D              Zebra finch 27bp
          Tibetan ground jay 10bp
  D             Mallard duck 10bp
B D                   Turkey 9bp
B D       American alligator 10bp
  D           Painted turtle 10bp
  D Chinese softshell turtle 9bp
  D   Spiny softshell turtle 10bp
B D            X. tropicalis 15bp
B D             Nile tilapia 4bp
B D                   Medaka 8bp
          Southern platyfish 4bp
B D              Stickleback 4bp
B D             Atlantic cod 4bp
    Mexican tetra (cavefish) 8bp

Alignment block 17 of 652 in window, 123908441 - 123908445, 5 bps 
B D                     Human  -cttcc
B D                     Chimp  -cttcc
B D                   Gorilla  -cttcc
B D                 Orangutan  -cttcc
B D                    Gibbon  -cttcc
B D                    Rhesus  -cttcc
B D       Crab-eating macaque  -cttcc
B D                    Baboon  -cttcc
B D              Green monkey  -cttcc
B D                  Marmoset  -cttcc
B D           Squirrel monkey  -cttcc
B D                  Bushbaby  -ctttc
           Chinese tree shrew  -cttcc
B D                  Squirrel  -tctcc
             Brush-tailed rat  -cctct
B D                    Rabbit  -tttct
B D                      Pika  -tttgc
B D                       Pig  -agtgt
B D                    Alpaca  -tttcc
               Bactrian camel  -tttcc
B D                   Dolphin  -tttcc
                 Killer whale  -tttcc
B D                       Cow  -tttcc
B D                     Horse  -cttcc
B D          White rhinoceros  -cttcc
B D                       Cat  -tttcc
B D                       Dog  -tttcc
B D                   Ferret   -cctcc
B D                     Panda  -cttcc
                 Weddell seal  -ctccc
B D                   Megabat  -ctgcc
B D                  Elephant  --cctc
          Cape elephant shrew  ---ctg
B D                   Manatee  --tctc
             Cape golden mole  --cctc
                     Aardvark  --cctc
B D                 Armadillo  --ttcc
B D                   Opossum  -ctccc
B D           Tasmanian devil  -cttcc
B D                  Platypus  -ctccc
  D               Rock pigeon  -ccccc
  D              Saker falcon  -ccatc
  D          Peregrine falcon  -ccatc
  D       Collared flycatcher  -actgt
  D    White-throated sparrow  -ccttc
B D       Medium ground finch  -acctc
B D               Zebra finch  -tcttc
           Tibetan ground jay  -ggttt
B D                Budgerigar  -cttag
  D                    Parrot  -cctat
  D              Mallard duck  -tccat
B D                    Turkey  -tcccc
B D        American alligator  -cctcc
  D            Painted turtle  -tccct
  D    Spiny softshell turtle  -cagct
B D             X. tropicalis  -cttcc
B D                Coelacanth  -ttgcc
B D              Nile tilapia  ---ctc
B D               Stickleback  ---cgt
B D              Atlantic cod  ---ctc
B D                   Lamprey  gcctc-
B D                  Hedgehog  ======
B D                Guinea pig  ======
B D                     Shrew  ======
              Golden hamster  ======
                 Spotted gar  ======
          Southern platyfish  ======
      Yellowbelly pufferfish  ======
B D                      Fugu  ======
B D                 Tetraodon  ======
B D                   Chicken  ======
    Mexican tetra (cavefish)  ======
B D                 Zebrafish  ======
B D                    Medaka  ======
         Pundamilia nyererei  ======
                 Zebra mbuna  ======
       Burton's mouthbreeder  ======
         Princess of Burundi  ======
  D           Green seaturtle  ======
  D             Scarlet macaw  ======
                  Chinchilla  ======
B D            Naked mole-rat  ======
      Lesser Egyptian jerboa  ======
B D                    Lizard  ======
B D           Chinese hamster  ======
                Prairie vole  ======
B D                    Tenrec  ======
  D  Chinese softshell turtle  ======
B D                       Rat  ======
B D                     Mouse  ======
               Domestic goat  ======
B D                     Sheep  ======
            Tibetan antelope  ======
             Star-nosed mole  NNNNNN
              Pacific walrus  ======
            Black flying-fox  ======
        David's myotis (bat)  ======
               Big brown bat  ======
B D                  Microbat  ======

Inserts between block 17 and 18 in window
  D              Rock pigeon 4bp
  D             Saker falcon 1bp
  D         Peregrine falcon 1bp
  D      Collared flycatcher 51bp
  D   White-throated sparrow 22bp
B D              Zebra finch 42bp
          Tibetan ground jay 3bp
B D               Budgerigar 37bp
  D                   Parrot 12bp
  D             Mallard duck 1bp
B D                   Turkey 1bp
B D       American alligator 1bp
  D           Painted turtle 1bp
  D   Spiny softshell turtle 1bp
B D             Nile tilapia 2bp
B D              Stickleback 4bp
B D             Atlantic cod 2bp

Alignment block 18 of 652 in window, 123908446 - 123908448, 3 bps 
B D                     Human  tct
B D                     Chimp  tct
B D                   Gorilla  tct
B D                 Orangutan  tct
B D                    Gibbon  tct
B D                    Rhesus  ttt
B D       Crab-eating macaque  ttt
B D                    Baboon  ttt
B D              Green monkey  ttt
B D                  Marmoset  cct
B D           Squirrel monkey  cct
B D                  Bushbaby  ttt
           Chinese tree shrew  ttc
B D                  Squirrel  cct
             Brush-tailed rat  tct
B D                    Rabbit  gct
B D                      Pika  tcc
B D                       Pig  t--
B D                    Alpaca  ttt
               Bactrian camel  ttt
B D                   Dolphin  t--
                 Killer whale  t--
B D                       Cow  t--
B D                     Horse  ttt
B D          White rhinoceros  ttt
B D                       Cat  ttc
B D                       Dog  ttc
B D                   Ferret   ttc
B D                     Panda  tcc
                 Weddell seal  ttc
B D                   Megabat  tga
B D                  Elephant  ttt
          Cape elephant shrew  ttt
B D                   Manatee  ttt
             Cape golden mole  ttt
                     Aardvark  tcc
B D                 Armadillo  ttt
B D                   Opossum  cgg
B D           Tasmanian devil  cgc
B D                  Platypus  tct
  D               Rock pigeon  -cc
  D              Saker falcon  -ca
  D          Peregrine falcon  -ca
  D              Mallard duck  -cc
B D                    Turkey  -tc
B D        American alligator  -cc
  D            Painted turtle  gct
  D    Spiny softshell turtle  tct
B D             X. tropicalis  ccc
B D                Coelacanth  -ac
B D              Nile tilapia  tct
B D              Atlantic cod  tcg
B D                   Lamprey  tct
B D                  Hedgehog  ===
B D                Guinea pig  ===
B D                     Shrew  ===
              Golden hamster  ===
                 Spotted gar  ===
B D               Stickleback  ===
          Southern platyfish  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
B D                 Tetraodon  ===
B D                   Chicken  ===
          Tibetan ground jay  ===
B D               Zebra finch  ===
  D    White-throated sparrow  ===
    Mexican tetra (cavefish)  ===
B D                 Zebrafish  ===
B D                    Medaka  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
  D           Green seaturtle  ===
  D             Scarlet macaw  ===
B D                Budgerigar  ===
                  Chinchilla  ===
B D            Naked mole-rat  ===
      Lesser Egyptian jerboa  ===
  D       Collared flycatcher  ===
B D       Medium ground finch  ===
B D                    Lizard  ===
  D                    Parrot  ===
B D           Chinese hamster  ===
                Prairie vole  ===
B D                    Tenrec  ===
  D  Chinese softshell turtle  ===
B D                       Rat  ===
B D                     Mouse  ===
               Domestic goat  ===
B D                     Sheep  ===
            Tibetan antelope  ===
             Star-nosed mole  NNN
              Pacific walrus  ===
            Black flying-fox  ===
        David's myotis (bat)  ===
               Big brown bat  ===
B D                  Microbat  ===

Inserts between block 18 and 19 in window
B D          Tasmanian devil 15bp
  D              Rock pigeon 2bp
  D             Saker falcon 2bp
  D         Peregrine falcon 2bp
  D             Mallard duck 2bp
B D                   Turkey 2bp
B D       American alligator 2bp
  D           Painted turtle 2bp
B D               Coelacanth 3bp

Alignment block 19 of 652 in window, 123908449 - 123908449, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  t
B D                  Squirrel  c
             Brush-tailed rat  a
B D                    Alpaca  t
               Bactrian camel  t
B D                     Horse  c
B D          White rhinoceros  c
B D                       Cat  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
                 Weddell seal  c
B D                   Megabat  c
B D                  Elephant  t
          Cape elephant shrew  t
B D                   Manatee  t
             Cape golden mole  t
                     Aardvark  t
B D                 Armadillo  t
B D                  Platypus  g
B D              Nile tilapia  c
B D              Atlantic cod  c
B D                   Lamprey  c
B D                  Hedgehog  =
B D                Guinea pig  =
B D                      Pika  -
B D                    Rabbit  -
B D                Coelacanth  =
B D                     Shrew  =
              Golden hamster  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D             X. tropicalis  -
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
  D             Scarlet macaw  =
B D                Budgerigar  =
B D                   Opossum  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D                    Parrot  =
B D           Chinese hamster  =
                Prairie vole  =
B D                    Tenrec  =
B D                       Pig  -
  D  Chinese softshell turtle  =
B D                   Dolphin  -
B D                       Rat  =
B D                     Mouse  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  N
              Pacific walrus  =
            Black flying-fox  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Cow  -
                Killer whale  -

Inserts between block 19 and 20 in window
B D                 Bushbaby 10bp
B D             Nile tilapia 1bp
B D             Atlantic cod 1bp

Alignment block 20 of 652 in window, 123908450 - 123908452, 3 bps 
B D                     Human  ctg
B D                     Chimp  ctg
B D                   Gorilla  ctg
B D                 Orangutan  ctg
B D                    Gibbon  ctg
B D                    Rhesus  ctg
B D       Crab-eating macaque  ctg
B D                    Baboon  ctg
B D              Green monkey  ctg
B D                  Marmoset  ctg
B D           Squirrel monkey  ctg
B D                  Bushbaby  ctt
           Chinese tree shrew  tcg
B D                  Squirrel  ctg
             Brush-tailed rat  atg
B D                    Rabbit  ctg
B D                      Pika  ccg
B D                  Platypus  ctc
  D               Rock pigeon  ttg
  D              Saker falcon  ctg
  D          Peregrine falcon  ctg
  D              Mallard duck  ctt
B D                    Turkey  tgt
B D        American alligator  ctt
  D            Painted turtle  cag
  D  Chinese softshell turtle  ctg
B D             X. tropicalis  ctg
B D                Coelacanth  ct-
B D                 Zebrafish  --g
B D                   Lamprey  ccg
B D                  Hedgehog  ===
B D                Guinea pig  ===
B D                     Shrew  ===
              Golden hamster  ===
B D              Atlantic cod  ===
                 Spotted gar  ===
B D               Stickleback  ===
          Southern platyfish  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
B D                 Tetraodon  ===
B D                   Chicken  ===
          Tibetan ground jay  ===
B D               Zebra finch  ===
  D    White-throated sparrow  ===
B D           Tasmanian devil  ===
    Mexican tetra (cavefish)  ===
B D                    Medaka  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
B D              Nile tilapia  ===
  D           Green seaturtle  ===
  D             Scarlet macaw  ===
B D                Budgerigar  ===
B D                   Opossum  ===
                  Chinchilla  ===
B D            Naked mole-rat  ===
      Lesser Egyptian jerboa  ===
  D       Collared flycatcher  ===
B D       Medium ground finch  ===
B D                    Lizard  ===
  D                    Parrot  ===
            Cape golden mole  ---
         Cape elephant shrew  ---
B D                   Manatee  ---
B D           Chinese hamster  ===
                Prairie vole  ===
                    Aardvark  ---
B D                  Elephant  ---
B D                    Tenrec  ===
B D                       Cat  ---
B D                   Megabat  ---
B D                       Pig  ---
B D                   Ferret   ---
B D                   Dolphin  ---
B D                       Rat  ===
B D                     Mouse  ===
B D                     Panda  ---
               Domestic goat  ===
B D                     Sheep  ===
            Tibetan antelope  ===
             Star-nosed mole  NNN
              Bactrian camel  ---
B D                    Alpaca  ---
              Pacific walrus  ===
            Black flying-fox  ===
B D          White rhinoceros  ---
B D                     Horse  ---
B D                 Armadillo  ---
                Weddell seal  ---
        David's myotis (bat)  ===
               Big brown bat  ===
B D                  Microbat  ===
B D                       Dog  ---
B D                       Cow  ---
                Killer whale  ---

Inserts between block 20 and 21 in window
B D                 Squirrel 15bp
            Brush-tailed rat 17bp
  D             Mallard duck 4bp
B D            X. tropicalis 1bp
B D                Zebrafish 2bp

Alignment block 21 of 652 in window, 123908453 - 123908453, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  t
           Chinese tree shrew  c
B D                  Squirrel  c
             Brush-tailed rat  c
B D                    Rabbit  c
B D                      Pika  c
B D                     Horse  c
B D          White rhinoceros  c
B D                       Dog  c
B D                   Ferret   a
B D                     Panda  t
                 Weddell seal  c
B D                   Megabat  t
B D                  Elephant  c
          Cape elephant shrew  a
B D                   Manatee  c
             Cape golden mole  t
                     Aardvark  c
B D                 Armadillo  c
B D                   Opossum  c
B D           Tasmanian devil  c
B D                  Platypus  t
  D               Rock pigeon  c
  D              Saker falcon  c
  D          Peregrine falcon  c
  D              Mallard duck  c
B D                    Turkey  c
B D        American alligator  t
  D            Painted turtle  t
  D  Chinese softshell turtle  c
B D             X. tropicalis  t
B D                Coelacanth  t
B D              Nile tilapia  c
B D              Atlantic cod  c
B D                 Zebrafish  c
B D                   Lamprey  c
B D                  Hedgehog  =
B D                Guinea pig  =
B D                     Shrew  =
              Golden hamster  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
  D           Green seaturtle  =
  D             Scarlet macaw  =
B D                Budgerigar  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D                    Parrot  =
B D           Chinese hamster  =
                Prairie vole  =
B D                    Tenrec  =
B D                       Cat  -
B D                       Pig  -
B D                   Dolphin  -
B D                       Rat  =
B D                     Mouse  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  N
              Bactrian camel  -
B D                    Alpaca  -
              Pacific walrus  =
            Black flying-fox  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Cow  -
                Killer whale  -

Inserts between block 21 and 22 in window
  D              Rock pigeon 7952bp

Alignment block 22 of 652 in window, 123908454 - 123908454, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  c
B D                  Squirrel  t
             Brush-tailed rat  t
B D                    Rabbit  t
B D                      Pika  c
B D                    Alpaca  g
               Bactrian camel  g
B D                     Horse  t
B D          White rhinoceros  t
B D                       Dog  t
B D                   Ferret   t
B D                     Panda  t
                 Weddell seal  t
B D                   Megabat  c
B D                  Elephant  t
          Cape elephant shrew  t
B D                   Manatee  t
             Cape golden mole  c
                     Aardvark  a
B D                 Armadillo  t
B D                   Opossum  c
B D           Tasmanian devil  t
B D                  Platypus  t
  D              Mallard duck  c
B D                    Turkey  c
B D        American alligator  c
  D            Painted turtle  c
  D  Chinese softshell turtle  a
B D             X. tropicalis  t
B D                Coelacanth  t
B D              Nile tilapia  t
B D              Atlantic cod  c
B D                 Zebrafish  t
B D                   Lamprey  c
B D                  Hedgehog  =
B D                Guinea pig  =
B D                     Shrew  =
              Golden hamster  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
  D           Green seaturtle  =
  D             Scarlet macaw  =
B D                Budgerigar  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  -
  D              Saker falcon  -
  D                    Parrot  =
B D           Chinese hamster  =
                Prairie vole  =
B D                    Tenrec  =
B D                       Cat  -
B D                       Pig  -
B D                   Dolphin  -
B D                       Rat  =
B D                     Mouse  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  N
              Pacific walrus  =
            Black flying-fox  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Cow  -
                Killer whale  -

Inserts between block 22 and 23 in window
  D             Mallard duck 9bp
B D                   Turkey 3bp

Alignment block 23 of 652 in window, 123908455 - 123908459, 5 bps 
B D                     Human  ttgcc
B D                     Chimp  ttgcc
B D                   Gorilla  ttgcc
B D                 Orangutan  ttgcc
B D                    Gibbon  ttgcc
B D                    Rhesus  ttgcc
B D       Crab-eating macaque  ttgcc
B D                    Baboon  ttgcc
B D              Green monkey  ttgcc
B D                  Marmoset  ttgtg
B D           Squirrel monkey  ttgcc
B D                  Bushbaby  ttgcc
           Chinese tree shrew  tggcc
B D                  Squirrel  ctccc
             Brush-tailed rat  gtttc
B D                    Rabbit  ccctc
B D                      Pika  tcact
B D                       Pig  ttcct
B D                    Alpaca  ttgcc
               Bactrian camel  ttgcc
B D                   Dolphin  ttgct
                 Killer whale  ttgct
B D                       Cow  ttcct
B D                     Horse  tggcc
B D          White rhinoceros  tggcc
B D                       Dog  tcacc
B D                   Ferret   tcacc
B D                     Panda  tcacc
                 Weddell seal  tcacc
B D                   Megabat  acgc-
B D                  Elephant  ttact
          Cape elephant shrew  tcact
B D                   Manatee  ttgcc
             Cape golden mole  ttgat
                     Aardvark  ttgct
B D                 Armadillo  ttgcc
B D                   Opossum  cggtc
B D           Tasmanian devil  gcgcc
B D                  Platypus  ttgcc
B D             X. tropicalis  ctact
B D              Nile tilapia  tgccc
B D              Atlantic cod  ctctc
B D                 Zebrafish  ttgtc
B D                   Lamprey  tctcc
B D                  Hedgehog  =====
B D                Guinea pig  =====
B D                Coelacanth  -----
B D                     Shrew  =====
              Golden hamster  =====
                 Spotted gar  =====
B D               Stickleback  =====
          Southern platyfish  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                 Tetraodon  =====
B D                    Turkey  =====
B D                   Chicken  =====
  D              Mallard duck  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
  D    White-throated sparrow  =====
    Mexican tetra (cavefish)  =====
B D                    Medaka  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
  D            Painted turtle  -----
  D           Green seaturtle  =====
B D        American alligator  -----
  D             Scarlet macaw  =====
B D                Budgerigar  =====
                  Chinchilla  =====
B D            Naked mole-rat  =====
      Lesser Egyptian jerboa  =====
  D               Rock pigeon  =====
  D       Collared flycatcher  =====
B D       Medium ground finch  =====
B D                    Lizard  =====
  D          Peregrine falcon  -----
  D              Saker falcon  -----
  D                    Parrot  =====
B D           Chinese hamster  =====
                Prairie vole  =====
B D                    Tenrec  =====
B D                       Cat  -----
  D  Chinese softshell turtle  -----
B D                       Rat  =====
B D                     Mouse  =====
               Domestic goat  =====
B D                     Sheep  =====
            Tibetan antelope  =====
             Star-nosed mole  NNNNN
              Pacific walrus  =====
            Black flying-fox  =====
        David's myotis (bat)  =====
               Big brown bat  =====
B D                  Microbat  =====

Inserts between block 23 and 24 in window
B D             Nile tilapia 4bp
B D                Zebrafish 6bp

Alignment block 24 of 652 in window, 123908460 - 123908466, 7 bps 
B D                     Human  t----------------------tgt--------ctg-
B D                     Chimp  t----------------------tgt--------ctg-
B D                   Gorilla  t----------------------tgt--------ctg-
B D                 Orangutan  t----------------------tgt--------ctg-
B D                    Gibbon  t----------------------tgt--------ctg-
B D                    Rhesus  t----------------------tct--------ctg-
B D       Crab-eating macaque  t----------------------tct--------ctg-
B D                    Baboon  t----------------------tct--------ctg-
B D              Green monkey  t----------------------tct--------ctg-
B D                  Marmoset  g----------------------tat--------ctg-
B D           Squirrel monkey  g----------------------cgt--------ctg-
B D                  Bushbaby  t----------------------ttt--------ctg-
           Chinese tree shrew  c----------------------tttg-------ctg-
B D                  Squirrel  c----------------------tc---------ctg-
             Brush-tailed rat  c----------------------ag---------cag-
B D                    Rabbit  c----------------------tc---------cag-
B D                      Pika  t----------------------cc---------ctg-
B D                       Pig  t----------------------ctg--------att-
B D                    Alpaca  t----------------------ttt--------ctt-
               Bactrian camel  t----------------------ttt--------ctt-
B D                   Dolphin  t----------------------ttt--------ctt-
                 Killer whale  t----------------------ttt--------ctt-
B D                       Cow  t----------------------ttt--------ctt-
B D                     Horse  t----------------------ttt--------ctc-
B D          White rhinoceros  t----------------------ttt--------ctt-
B D                       Cat  ----------------------------------ctc-
B D                       Dog  t----------------------ctt--------ctt-
B D                   Ferret   t----------------------ctt--------ctc-
B D                     Panda  t----------------------cct--------ctt-
                 Weddell seal  t----------------------ctt--------ctt-
B D                  Elephant  g----------------------ttc--------ctg-
          Cape elephant shrew  a-----------------------tc--------ttc-
B D                   Manatee  g----------------------ttt--------ctg-
             Cape golden mole  g----------------------gtt--------ttg-
                     Aardvark  g----------------------ttt--------ctg-
B D                 Armadillo  t----------------------ttt--------cca-
B D                   Opossum  t----------------------gtc--------ctc-
B D           Tasmanian devil  c----------------------ttc--------ccg-
B D                  Platypus  ccagttggtaccatggccgcatgtct--------ctg-
B D             X. tropicalis  c----------------------tgt--------ctc-
B D                Coelacanth  --------------------------tcatctcgctg-
B D              Nile tilapia  ------------------------------------t-
B D                    Medaka  ------------------------------------c-
           Southern platyfish  ------------------------------------g-
B D               Stickleback  ------------------------------------c-
B D                 Zebrafish  ------------------------------------t-
     Mexican tetra (cavefish)  ------------------------------------t-
B D                   Lamprey  -------------------------------accccca
B D                  Hedgehog  ======================================
B D                Guinea pig  ======================================
B D                     Shrew  ======================================
              Golden hamster  ======================================
B D              Atlantic cod  ======================================
                 Spotted gar  ======================================
      Yellowbelly pufferfish  ======================================
B D                      Fugu  ======================================
B D                 Tetraodon  ======================================
B D                    Turkey  ======================================
B D                   Chicken  ======================================
  D              Mallard duck  ======================================
          Tibetan ground jay  ======================================
B D               Zebra finch  ======================================
  D    White-throated sparrow  ======================================
         Pundamilia nyererei  ======================================
                 Zebra mbuna  ======================================
       Burton's mouthbreeder  ======================================
         Princess of Burundi  ======================================
  D            Painted turtle  --------------------------------------
  D           Green seaturtle  ======================================
B D        American alligator  --------------------------------------
  D             Scarlet macaw  ======================================
B D                Budgerigar  ======================================
                  Chinchilla  ======================================
B D            Naked mole-rat  ======================================
      Lesser Egyptian jerboa  ======================================
  D               Rock pigeon  ======================================
  D       Collared flycatcher  ======================================
B D       Medium ground finch  ======================================
B D                    Lizard  ======================================
  D          Peregrine falcon  --------------------------------------
  D              Saker falcon  --------------------------------------
  D                    Parrot  ======================================
B D           Chinese hamster  ======================================
                Prairie vole  ======================================
B D                    Tenrec  ======================================
B D                   Megabat  --------------------------------------
  D  Chinese softshell turtle  --------------------------------------
B D                       Rat  ======================================
B D                     Mouse  ======================================
               Domestic goat  ======================================
B D                     Sheep  ======================================
            Tibetan antelope  ======================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ======================================
            Black flying-fox  ======================================
        David's myotis (bat)  ======================================
               Big brown bat  ======================================
B D                  Microbat  ======================================

Inserts between block 24 and 25 in window
B D                   Medaka 6bp
          Southern platyfish 6bp
B D              Stickleback 3bp

Alignment block 25 of 652 in window, 123908467 - 123908493, 27 bps 
B D                     Human  tgc-----------------tgttc-t------------c----------------------ttccactt
B D                     Chimp  tgc-----------------tgttc-t------------c----------------------ttccactt
B D                   Gorilla  tgc-----------------tgttc-t------------c----------------------ttccactt
B D                 Orangutan  cgc-----------------tgttc-t------------c-----------t----------ttccactt
B D                    Gibbon  cgc-----------------tgttc-t------------c-----------c----------ttccactt
B D                    Rhesus  tgc-----------------tattc-t------------c-----------c----------ttccactt
B D       Crab-eating macaque  tgc-----------------tattc-t------------c-----------c----------ttccactt
B D                    Baboon  tgc-----------------tattc-t------------c-----------c----------ttccactt
B D              Green monkey  tgc-----------------tattc-t------------c-----------c----------ttccactt
B D                  Marmoset  cac-----------------tgttc-------------------------------------ttccactt
B D           Squirrel monkey  cac-----------------tgttc-------------------------------------ttccactt
B D                  Bushbaby  tat-----------------cagtc-t------------c-----------c----------ttctgctt
           Chinese tree shrew  tgt-----------------tgctt-c------------c-----------t----------tgccgccg
B D                  Squirrel  ggc-----------------tccttcg------------tccca-------c----------tcctctcg
             Brush-tailed rat  gga-----------------tgctg-g------------tacaatggatacc----------tgccacct
B D                    Rabbit  ---------------------------------------------------c----------ttctgcc-
B D                      Pika  tgt-----------------ccgtg-g------------c-----------c----------ttctccca
B D                       Pig  c-------------------tgtca---------------------------------------------
B D                    Alpaca  cat-----------------cgctt-t------------c-----------c----------ctctgctt
               Bactrian camel  cat-----------------cattt-t------------c-----------c----------ctctgctt
B D                   Dolphin  cat-----------------cgtct---------------------------------------------
                 Killer whale  cat-----------------cgtct---------------------------------------------
B D                       Cow  cat-----------------cattt-t------------c-----------c----------ttctgatt
B D                     Horse  cat-----------------cattt-t------------c-----------c----------ttctgctt
B D          White rhinoceros  cat-----------------cattt-t------------c-----------c----------ttctgctt
B D                       Cat  cat-----------------cactt-t------------c-----------c----------ttacgctt
B D                       Dog  cat-----------------cattt-t------------c-----------c----------gtatgctt
B D                   Ferret   cat-----------------cgttt-t------------c-----------c----------tgaagctt
B D                     Panda  cat-----------------cattt-t------------c-----------c----------tggtgctt
                 Weddell seal  cat-----------------cgtgt-t------------c-----------c----------tgctgctt
B D                   Megabat  ----------------------------------------------------------------------
B D                  Elephant  cat-----------------catct-t------------c-----------t----------ctct----
          Cape elephant shrew  ctt-----------------ctgct-t------------c-----------c----------ctc-----
B D                   Manatee  cat-----------------ctcct-t------------c-----------c----------ttct---t
             Cape golden mole  cat-----------------agctt-g------------t-----------g----------ttac---a
                     Aardvark  cac-----------------cattt-c------------c-----------t----------ctctgctt
B D                 Armadillo  cat-----------------tg-tt-t------------c-----------c----------ttctgctc
B D                   Opossum  cct-----------------cggcc-t------------c-----------cagggg----ctcccccgt
B D           Tasmanian devil  cctgatcc------------cggcc-t------------t-----------cccg-------cccgctgc
B D                  Platypus  -gt-----------------tggtg-a------------c-----------t----------ctgtgtct
  D               Rock pigeon  -----------cgtg-----tcctt-c------------t-----------t----------gtcctatc
  D              Saker falcon  -----------cttagtccatcctt-c------------c-----------t----------gtccaatc
  D          Peregrine falcon  -----------cttagtccatcctt-c------------c-----------t----------gtccaatc
  D       Collared flycatcher  --------------------tcact-g------------t-----------g----------gctcgtac
  D    White-throated sparrow  --------------------tgtcc-c------------t-----------t----------tcccattc
B D               Zebra finch  --------------------tctcc-t------------c-----------t----------ccccgttc
           Tibetan ground jay  --------------------tcccc-c------------t-----------t----------tcccaggt
B D                Budgerigar  --------------------tcccc-ag-----------t-----------g----------tccccccc
  D                    Parrot  --------------------tcccc-tg-----------c-----------a----------cccccacg
  D              Mallard duck  --------------------tctca-t------------t-----------g----------gc---tcc
B D                   Chicken  --------------------tggct-c------------t-----------g----------gcattgcc
B D                    Turkey  --------------------tccct-c------------t-----------gt---------tcccttcc
B D        American alligator  ------------------tttcctt-c------------c-----------g----------cgctcctt
  D            Painted turtle  -----gccatgccccaccagtccca--------------g-----------t----------ctccaccc
  D  Chinese softshell turtle  -----acc-tgccgtgtctgtgccc-ctggagctggtgtg-----------t----------cgccgtgc
B D             X. tropicalis  cat-----------------ccttc-c------------c-----------ccccgattcttctctgtct
B D                Coelacanth  cgc-----------------tcttc-t------------c-----------g----------tctcattg
B D                    Medaka  ------------------gctggtt-c------------t-----------g----------g-------
           Southern platyfish  ------------------tcctgtt-c------------t-----------c----------gttggtgt
B D               Stickleback  ------------------tgttgtc-c------------t-----------g----------tgacactg
B D                 Zebrafish  ------------------ctctctc-c------------t-----------t----------ctctgtct
     Mexican tetra (cavefish)  ------------------ctctttt-c------------t-----------t----------cgttagtt
B D                   Lamprey  ---------------------------------------------------------------------t
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D           Green seaturtle  ======================================================================
  D             Scarlet macaw  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================

                        Human  ctg-------tctt------tc---------
                        Chimp  ctg-------tctt------tc---------
                      Gorilla  ctg-------tctt------tc---------
                    Orangutan  ctg-------tctt------tc---------
                       Gibbon  ctc-------tctt------tc---------
                       Rhesus  ctg-------tctt------tc---------
          Crab-eating macaque  ctg-------tctt------tc---------
                       Baboon  ctg-------tctt------tc---------
                 Green monkey  ctg-------tctt------tc---------
                     Marmoset  ccg-------tctt------tc---------
              Squirrel monkey  ccg-------tctt------tc---------
                     Bushbaby  ctg-------tctc------tc---------
           Chinese tree shrew  cca-------ccctcagaactt---------
                     Squirrel  ctg-------tctc------ct---------
             Brush-tailed rat  gtg-------tctc------ac---------
                       Rabbit  -----------ttc------ct---------
                         Pika  t---------tttc------ct---------
                          Pig  --------------------cc---------
                       Alpaca  ctg-------tctc------tc---------
               Bactrian camel  ctg-------tctc------tc---------
                      Dolphin  --------------------tc---------
                 Killer whale  --------------------tc---------
                          Cow  ctg-------tctc------tc---------
                        Horse  ctg-------tctc------tc---------
             White rhinoceros  ctg-------tctc------tc---------
                          Cat  ctg-------tctc------tc---------
                          Dog  ctg-------tctc------tc---------
                      Ferret   ctg-------gctc------tc---------
                        Panda  ctg-------tctc------tc---------
                 Weddell seal  ctg-------gctc------tc---------
                      Megabat  --g-------gctc------tc---------
                     Elephant  ------------ct------tc---------
          Cape elephant shrew  ------------at------cc---------
                      Manatee  ctc-------tccc------tc---------
             Cape golden mole  ccc-------catc------tc---------
                     Aardvark  ctc-------tctc------tc---------
                    Armadillo  ctctta----tctc------tt---------
                      Opossum  ctg-------tcct------cc---------
              Tasmanian devil  cag-------cctt------cc---------
                     Platypus  ctc-------ggtc------tc---------
                  Rock pigeon  gtg-------ttcc------tt---------
                 Saker falcon  cca-------tccc------at---------
             Peregrine falcon  cca-------tccc------at---------
          Collared flycatcher  ctg-------tcgc------tg---------
       White-throated sparrow  cag-------tctc------tc---------
                  Zebra finch  ccg-------tctc------tt---------
           Tibetan ground jay  caggaatatttctt------tc---------
                   Budgerigar  ata-------tctc------cc---------
                       Parrot  ctg-------tccc------tc---------
                 Mallard duck  gtg-------tcac------ct---------
                      Chicken  cag-------cacc------cc---------
                       Turkey  ctg-------cccc------ct---------
           American alligator  cca-------tccc------cc---------
               Painted turtle  cta-------tctc------aa---------
     Chinese softshell turtle  ctg-------tgcc------aa---------
                X. tropicalis  cca-------tcct------tc---------
                   Coelacanth  cgc-------cctt------c----------
                       Medaka  --g-------cctc------ct---------
           Southern platyfish  ttg-------tctt------tc---------
                  Stickleback  ttg-------tctc------tc---------
                    Zebrafish  ctt-------tctc------tc---------
     Mexican tetra (cavefish)  cct-------ctct------tc---------
                      Lamprey  ttg-------tctc------cctcgtccatc
                     Hedgehog  ===============================
                   Guinea pig  ===============================
                        Shrew  ===============================
               Golden hamster  ===============================
                 Atlantic cod  ===============================
                  Spotted gar  ===============================
       Yellowbelly pufferfish  ===============================
                         Fugu  ===============================
                    Tetraodon  ===============================
          Pundamilia nyererei  ===============================
                  Zebra mbuna  ===============================
        Burton's mouthbreeder  ===============================
          Princess of Burundi  ===============================
                 Nile tilapia  ===============================
              Green seaturtle  ===============================
                Scarlet macaw  ===============================
                   Chinchilla  ===============================
               Naked mole-rat  ===============================
       Lesser Egyptian jerboa  ===============================
          Medium ground finch  ===============================
                       Lizard  ===============================
              Chinese hamster  ===============================
                 Prairie vole  ===============================
                       Tenrec  ===============================
                          Rat  ===============================
                        Mouse  ===============================
                Domestic goat  ===============================
                        Sheep  ===============================
             Tibetan antelope  ===============================
              Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
               Pacific walrus  ===============================
             Black flying-fox  ===============================
         David's myotis (bat)  ===============================
                Big brown bat  ===============================
                     Microbat  ===============================

Inserts between block 25 and 26 in window
B D                 Marmoset 2bp
B D          Squirrel monkey 2bp
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
B D                      Cow 2bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 2bp
B D                  Ferret  2bp
B D                    Panda 2bp
                Weddell seal 2bp
B D                  Megabat 2bp
B D                  Chicken 1bp
B D                   Turkey 1bp
B D               Coelacanth 74bp
B D                   Medaka 7bp
B D              Stickleback 4bp

Alignment block 26 of 652 in window, 123908494 - 123908494, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
           Chinese tree shrew  c
B D                  Squirrel  c
             Brush-tailed rat  c
B D                    Rabbit  c
B D                      Pika  c
B D                       Pig  c
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  c
                 Killer whale  c
B D                       Cow  c
B D                     Horse  c
B D          White rhinoceros  c
B D                       Cat  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
                 Weddell seal  c
B D                   Megabat  c
B D                  Elephant  t
          Cape elephant shrew  t
B D                   Manatee  t
             Cape golden mole  t
                     Aardvark  t
B D                 Armadillo  c
B D                   Opossum  c
B D           Tasmanian devil  t
B D                  Platypus  t
  D               Rock pigeon  c
  D              Saker falcon  c
  D          Peregrine falcon  c
  D       Collared flycatcher  t
  D    White-throated sparrow  c
B D               Zebra finch  c
           Tibetan ground jay  c
B D                Budgerigar  c
  D                    Parrot  c
  D              Mallard duck  c
B D                   Chicken  c
B D                    Turkey  c
B D        American alligator  c
  D            Painted turtle  c
  D  Chinese softshell turtle  a
B D             X. tropicalis  c
B D                 Zebrafish  t
     Mexican tetra (cavefish)  t
B D                  Hedgehog  =
B D                Guinea pig  =
B D                   Lamprey  -
B D                Coelacanth  =
B D                     Shrew  =
              Golden hamster  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D           Green seaturtle  =
  D             Scarlet macaw  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  =
B D       Medium ground finch  =
B D                    Lizard  =
B D           Chinese hamster  =
                Prairie vole  =
B D                    Tenrec  =
B D                  Bushbaby  -
B D                       Rat  =
B D                     Mouse  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  N
              Pacific walrus  =
            Black flying-fox  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =

Inserts between block 26 and 27 in window
  D              Rock pigeon 10bp
  D             Saker falcon 5bp
  D         Peregrine falcon 5bp
  D      Collared flycatcher 11bp
B D              Zebra finch 53bp
          Tibetan ground jay 5bp
  D             Mallard duck 9bp
B D                  Chicken 9bp
B D                   Turkey 9bp
B D       American alligator 9bp
  D           Painted turtle 2bp
  D Chinese softshell turtle 2bp

Alignment block 27 of 652 in window, 123908495 - 123908496, 2 bps 
B D                     Human  a--t
B D                     Chimp  a--t
B D                   Gorilla  a--t
B D                 Orangutan  a--t
B D                    Gibbon  a--t
B D                    Rhesus  a--t
B D       Crab-eating macaque  a--t
B D                    Baboon  a--t
B D              Green monkey  a--t
B D                  Marmoset  a--c
B D           Squirrel monkey  g--c
           Chinese tree shrew  g--c
B D                  Squirrel  a--c
             Brush-tailed rat  a--c
B D                    Rabbit  a--c
B D                      Pika  g--t
B D                       Pig  a--c
B D                    Alpaca  a--c
               Bactrian camel  a--c
B D                   Dolphin  a--c
                 Killer whale  a--c
B D                       Cow  a--c
B D                     Horse  a--t
B D          White rhinoceros  a--t
B D                       Cat  a--c
B D                       Dog  a--t
B D                   Ferret   g--t
B D                     Panda  a--t
                 Weddell seal  g--g
B D                   Megabat  a--g
B D                  Elephant  g--t
          Cape elephant shrew  g--t
B D                   Manatee  g--t
             Cape golden mole  g--t
                     Aardvark  c--t
B D                 Armadillo  g--t
B D                   Opossum  t--c
B D           Tasmanian devil  g--c
B D                  Platypus  g--t
  D               Rock pigeon  g--t
  D              Saker falcon  ---c
  D          Peregrine falcon  ---c
  D    White-throated sparrow  ---t
B D                Budgerigar  a--t
  D                    Parrot  a--t
  D              Mallard duck  a--t
B D                   Chicken  a--c
B D                    Turkey  atgt
B D        American alligator  ---t
  D            Painted turtle  ---t
  D  Chinese softshell turtle  ---t
B D                    Medaka  ---c
B D               Stickleback  ---c
B D                 Zebrafish  g--c
     Mexican tetra (cavefish)  a--c
B D                  Hedgehog  ====
B D                Guinea pig  ====
B D                   Lamprey  ----
B D                Coelacanth  ====
B D                     Shrew  ====
              Golden hamster  ====
B D              Atlantic cod  ====
                 Spotted gar  ====
          Southern platyfish  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
B D                 Tetraodon  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
B D             X. tropicalis  ----
  D           Green seaturtle  ====
  D             Scarlet macaw  ====
                  Chinchilla  ====
B D            Naked mole-rat  ====
      Lesser Egyptian jerboa  ====
  D       Collared flycatcher  ====
B D       Medium ground finch  ====
B D                    Lizard  ====
B D           Chinese hamster  ====
                Prairie vole  ====
B D                    Tenrec  ====
B D                  Bushbaby  ----
B D                       Rat  ====
B D                     Mouse  ====
               Domestic goat  ====
B D                     Sheep  ====
            Tibetan antelope  ====
             Star-nosed mole  NNNN
              Pacific walrus  ====
            Black flying-fox  ====
        David's myotis (bat)  ====
               Big brown bat  ====
B D                  Microbat  ====

Inserts between block 27 and 28 in window
  D             Saker falcon 1bp
  D         Peregrine falcon 1bp
  D   White-throated sparrow 6bp
B D               Budgerigar 6bp
  D             Mallard duck 5bp
B D                  Chicken 5bp
B D                   Turkey 5bp
B D       American alligator 6bp
  D           Painted turtle 1bp
  D Chinese softshell turtle 1bp
B D                   Medaka 4bp
B D              Stickleback 4bp

Alignment block 28 of 652 in window, 123908497 - 123908504, 8 bps 
B D                     Human  g-----gcg--tg--------------gt-----
B D                     Chimp  g-----gcg--tg--------------gt-----
B D                   Gorilla  g-----gcg--tg--------------gt-----
B D                 Orangutan  a-----gcg--tg--------------gt-----
B D                    Gibbon  g-----gcg--tg--------------gt-----
B D                    Rhesus  a-----gcg--tg--------------gt-----
B D       Crab-eating macaque  a-----gcg--tg--------------gt-----
B D                    Baboon  a-----gcg--tg--------------gt-----
B D              Green monkey  a-----gtg--tg--------------gt-----
B D                  Marmoset  g-----gtg--tt--------------gt-----
B D           Squirrel monkey  g-----gtg--tt--------------gg-----
           Chinese tree shrew  a-----ccg--ag--------------ac-----
B D                  Squirrel  a-----gct--tt--------------gt-----
             Brush-tailed rat  g-----ccc--tg--------------ct-----
B D                    Rabbit  g-----gct--tt--------------gt-----
B D                      Pika  g-----gcc--gt--------------at-----
B D                       Pig  g-----gct--atgg-----------tgt-----
B D                    Alpaca  a-----gct--ttgg-----------tgt-----
               Bactrian camel  a-----gct--ttgg-----------tgt-----
B D                   Dolphin  g-----gct--tt---------------------
                 Killer whale  g-----gct--tt---------------------
B D                       Cow  g-----gct--ttgg-----------tgc-----
B D                     Horse  g-----gct--tggg-----------tgt-----
B D          White rhinoceros  g-----gct--ttga-----------tgt-----
B D                       Cat  g-----gtt--ttgg-----------tgt-----
B D                       Dog  c-----att--ttgg-----------tgt-----
B D                   Ferret   g-----g-t--ctgg-----------cgt-----
B D                     Panda  g-----gtt--ccag-----------tgt-----
                 Weddell seal  g-----ggt--ctgg-----------tgt-----
B D                   Megabat  ---------------------------gt-----
B D                  Elephant  g-----gct--ttgg-----------tgt-----
          Cape elephant shrew  g-----gcc--ttgg-----------cgt-----
B D                   Manatee  g-----gct--ttgg-----------tgt-----
             Cape golden mole  g-----gacagccgg-----------ggt-----
                     Aardvark  g-----gct--ttgg-----------tg------
B D                 Armadillo  g-----gat--ttgg-----------cgt-----
B D                   Opossum  g-----gcc--tccaggggctccctctgt-----
B D           Tasmanian devil  a-----gcc--ttcc----cgcccgctgc-----
B D                  Platypus  t-----tct--ct---------------------
  D               Rock pigeon  ------gt--------------------------
  D       Collared flycatcher  g-----gt--------------------------
  D    White-throated sparrow  g-----tt--------------------------
           Tibetan ground jay  g-----tt--------------------------
B D                Budgerigar  g-----gt--------------------------
  D              Mallard duck  g-----tt--------------------------
B D                   Chicken  a-----ga--------------------------
B D                    Turkey  a-----tc--------------------------
B D        American alligator  g-----at--------------------------
  D            Painted turtle  a-----gt--------------------------
  D  Chinese softshell turtle  gacgatgt--------------------------
B D             X. tropicalis  -------c--------------------------
B D                    Medaka  --------------------------agt-----
B D               Stickleback  --------------------------ggt-----
B D              Atlantic cod  --------------------------ggc-----
B D                 Zebrafish  --------------------------tgt-----
     Mexican tetra (cavefish)  --------------------------t-------
B D                   Lamprey  --------------------------ggcctcct
B D                  Hedgehog  ==================================
B D                Guinea pig  ==================================
B D                Coelacanth  ==================================
B D                     Shrew  ==================================
              Golden hamster  ==================================
                 Spotted gar  ==================================
          Southern platyfish  ==================================
      Yellowbelly pufferfish  ==================================
B D                      Fugu  ==================================
B D                 Tetraodon  ==================================
B D               Zebra finch  ==================================
         Pundamilia nyererei  ==================================
                 Zebra mbuna  ==================================
       Burton's mouthbreeder  ==================================
         Princess of Burundi  ==================================
B D              Nile tilapia  ==================================
  D           Green seaturtle  ==================================
  D             Scarlet macaw  ==================================
                  Chinchilla  ==================================
B D            Naked mole-rat  ==================================
      Lesser Egyptian jerboa  ==================================
B D       Medium ground finch  ==================================
B D                    Lizard  ==================================
  D          Peregrine falcon  ==================================
  D              Saker falcon  ==================================
  D                    Parrot  ==================================
B D           Chinese hamster  ==================================
                Prairie vole  ==================================
B D                    Tenrec  ==================================
B D                  Bushbaby  ----------------------------------
B D                       Rat  ==================================
B D                     Mouse  ==================================
               Domestic goat  ==================================
B D                     Sheep  ==================================
            Tibetan antelope  ==================================
             Star-nosed mole  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
              Pacific walrus  ==================================
            Black flying-fox  ==================================
        David's myotis (bat)  ==================================
               Big brown bat  ==================================
B D                  Microbat  ==================================

Inserts between block 28 and 29 in window
  D              Rock pigeon 4bp
  D      Collared flycatcher 4bp
  D   White-throated sparrow 4bp
          Tibetan ground jay 4bp
B D               Budgerigar 1bp
B D                  Chicken 13bp
B D                   Turkey 13bp
B D       American alligator 5bp
B D            X. tropicalis 2bp
B D                   Medaka 9bp
B D              Stickleback 12bp
B D             Atlantic cod 11bp
B D                Zebrafish 32bp
    Mexican tetra (cavefish) 5bp

Alignment block 29 of 652 in window, 123908505 - 123908511, 7 bps 
B D                     Human  ------ctg-gga----g
B D                     Chimp  ------ctg-gga----g
B D                   Gorilla  ------ctg-gga----g
B D                 Orangutan  ------ctg-gga----g
B D                    Gibbon  ------ctg-gga----g
B D                    Rhesus  ------ctg-gga----g
B D       Crab-eating macaque  ------ctg-gga----g
B D                    Baboon  ------ctg-gga----g
B D              Green monkey  ------ccg-gga----g
B D                  Marmoset  ------ctg-tga----g
B D           Squirrel monkey  ------ctg-cga----g
           Chinese tree shrew  ------cca-agacctga
B D                  Squirrel  ------ct--gga----g
             Brush-tailed rat  ------cccaggg----g
B D                    Rabbit  ----------gga----g
B D                      Pika  ----------ggt----g
B D                       Pig  ------ctg-tac----c
B D                    Alpaca  ------ctg---------
               Bactrian camel  ------ctg---------
B D                       Cow  ------ctg-cac----a
B D                     Horse  ------ctg-cac----c
B D          White rhinoceros  ------ctg-cac----a
B D                       Cat  ------ctg-cac----a
B D                       Dog  ------ctg-cag----g
B D                   Ferret   ------ctg-cag----g
B D                     Panda  ------c-g-cag----g
                 Weddell seal  ------ctg-cag----g
B D                   Megabat  ------ttg-ccc----g
B D                  Elephant  ------ctg-cgc-----
          Cape elephant shrew  ------cct-ct------
B D                   Manatee  ------ttg-tgc-----
             Cape golden mole  ------gct-tcc-----
B D                 Armadillo  ------ctg-cat----g
B D                   Opossum  ------ctg--------t
B D           Tasmanian devil  ------cgg--------c
  D               Rock pigeon  ------gtc---------
  D       Collared flycatcher  ------gtg---------
  D    White-throated sparrow  ------atg---------
           Tibetan ground jay  ------aag---------
B D                   Chicken  ------gtg---------
B D                    Turkey  ------ttg---------
B D        American alligator  ------gag---------
  D            Painted turtle  ------ttc---------
  D  Chinese softshell turtle  ------gtc---------
B D             X. tropicalis  ------ctg-at------