Multiz Alignments of 100 Vertebrates
 

Capitalize exons based on show bases
Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 889 in window, 39344780 - 39345032, 253 bps 
B D                     Human  atgcttgagcccactcgcccagctcctgagatcttacctggaagctgctaatcaccagctttaggtgttt
B D                     Chimp  atgcttgagcccactcgcccagctcctgagatcttaccgggaagctgctaatcaccagctttaggtgttt
B D                   Gorilla  atgcttgagcccactcgcccagctcctgagatcttaccgggaagctgctaatcaccagctttaggtgttt
B D                 Orangutan  atgcttgagcccactcgcccagctcctgagatcttactgggaagctgctaatcaccagctttaggtgttt
B D                    Gibbon  atgcttgagcccactcgcccagctcctgagatcttactgggaagctgctaatcaccagctttaggtgttt
B D                    Rhesus  atgcttgagcccacttgcccggctcttgagatcttatcagtaagctgctaatcaccagctttacgtgttt
B D       Crab-eating macaque  atgcttgagcccacttgcccagctcttgagatcttatcagtaagctgctaatcaccagctttacgtgttt
B D                    Baboon  atgcttgagcccacttgcccagctcctgagatcttatcagtaagctgctaatcaccagctttacgtgttt
B D              Green monkey  atgcttgagcccacttgcccagctcctgagatcttatcagtaagctgctaatcaccagctttacgtgttt
B D                  Marmoset  atgcttgagcccacccgcccagctcctgaaatcttattgggaagctgctaatcaccagcttcaggtgttt
B D           Squirrel monkey  atgcctgagcccactcacccagctcctgaaatcttattgggaggctgctaaatactagcttcaggtgttt
B D                       Rat  ======================================================================
                Prairie vole  ======================================================================
              Golden hamster  ======================================================================
B D                     Mouse  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                      Pika  ======================================================================
                Weddell seal  ======================================================================
B D                  Hedgehog  ----------------------------------------------------------------------
B D                     Shrew  ======================================================================
B D                Guinea pig  ======================================================================
B D                       Pig  ======================================================================
B D                    Rabbit  ======================================================================
B D                   Lamprey  ======================================================================
            Cape golden mole  ======================================================================
                    Aardvark  ======================================================================
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================
B D                   Dolphin  ======================================================================
B D             X. tropicalis  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D           Tasmanian devil  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
B D                Budgerigar  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
         Cape elephant shrew  ======================================================================
          Chinese tree shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Wallaby  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D           Chinese hamster  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                  Bushbaby  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
             Star-nosed mole  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
B D                     Panda  ======================================================================
                Killer whale  ======================================================================
B D                       Dog  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
B D                       Cow  ======================================================================

                        Human  t-ctatctattgagagcctgcctttctctgctgtc-gctgcaaccaattattattttagagagatggttg
                        Chimp  t-ctatctattgagagcctgcctttctctgctgtc-gctgcaaccaattattattttagagagatggttg
                      Gorilla  t-ctatctattgagagcctgcttttctctgctgcc-gctgcaaccaattattattttagagagatggttg
                    Orangutan  t-ctatctattgagagcctgcctttctctgctgccggctgcaaccaattattattttagagagatggttg
                       Gibbon  t-ctatctattgagagcctgcctttctctgttgctggctgcaaccaattattattttagagagagggttg
                       Rhesus  t-ctatctattaaaagcatgcctttctctgttgccgactacaaccaattattattttagagagatggttg
          Crab-eating macaque  t-ctatctattaaaagcatgcctttctctgttgccgactacaaccaattattattttagagagatagttg
                       Baboon  t-ctatctattaaaagcatgcctttctctgttgccgactacaaccaattattattttagagagatggttg
                 Green monkey  t-ctatctattaaaagcatgcctttctctgttgccgactacaaccaattattattttagagagatggttg
                     Marmoset  tactatctattgagagcctgcctttccctggtgccggctgcaacccattattattttagcaatatggttt
              Squirrel monkey  tactatctattgagagcctgcctttccctggtgccagctgcaaccaatcattattttagtgatacggttg
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
               Golden hamster  ======================================================================
                        Mouse  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                         Pika  ======================================================================
                 Weddell seal  ======================================================================
                     Hedgehog  ----------------------------------------------------------------------
                        Shrew  ======================================================================
                   Guinea pig  ======================================================================
                          Pig  ======================================================================
                       Rabbit  ======================================================================
                      Lamprey  ======================================================================
             Cape golden mole  ======================================================================
                     Aardvark  ======================================================================
                   Coelacanth  ======================================================================
       Spiny softshell turtle  ----------------------------------------------------------------------
                      Megabat  ======================================================================
                      Dolphin  ======================================================================
                X. tropicalis  ======================================================================
                 Atlantic cod  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
           Southern platyfish  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
              Tasmanian devil  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                    Zebrafish  ======================================================================
                       Medaka  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
           American alligator  ======================================================================
                   Budgerigar  ======================================================================
                      Opossum  ======================================================================
               Naked mole-rat  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
          Cape elephant shrew  ======================================================================
           Chinese tree shrew  ======================================================================
                     Platypus  ======================================================================
                      Wallaby  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
              Chinese hamster  ======================================================================
                       Tenrec  ======================================================================
                          Cat  ======================================================================
                     Bushbaby  ======================================================================
     Chinese softshell turtle  ======================================================================
                      Ferret   ======================================================================
              Star-nosed mole  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
               Pacific walrus  ======================================================================
                        Panda  ======================================================================
                 Killer whale  ======================================================================
                          Dog  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
                        Horse  ======================================================================
                     Squirrel  ======================================================================
                    Armadillo  ======================================================================
         David's myotis (bat)  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
                          Cow  ======================================================================

                        Human  aacaaccacctgaccgtcacctgatggtcacctgacattcttggaggtgaccatcaggtgatgtggaggt
                        Chimp  aacaaccacctgaccatcacctgatggtcacctgacattcttggaggtgaccatcaggtgatgtggaggt
                      Gorilla  aacaaccacctgaccatcacctgatggtcacctgacattcttggaggtgaccatcaggtgatgtggaggt
                    Orangutan  aacaaccacctgaccatcatctgatggtcacctgacattcttggaggtgaccatcaggtgatgtggaggt
                       Gibbon  aacaaccacctgaccatcacctgatggtcacctgacattcttggaggtgaccatcaggtgatgtggaggt
                       Rhesus  aacaaccgcctgaccatcacctgatggtcacctgacattcttggaggtgaccatcaggtaatgtggaggt
          Crab-eating macaque  aacaaccgcctgaccatcacctgatggtcacctgacattcttggaggtgaccatcaggtaatgtggaggt
                       Baboon  aagaaccgcctgaccatcacctgatggtcacctgacattcttggaggtgaccatcaggtaatgtggaggt
                 Green monkey  aacaaccacctgaccatcacctgatggtcacctgacattcttggaggtgaccatcaggtaatgtggaggt
                     Marmoset  aacaatcacctgaccatcacctgattgtcgcctgacattcttggaggcgaccatcaggtgatgtggaggt
              Squirrel monkey  aacaaccacctgaccgtcacctgatggtcgcctgacattcttggaggcgaccatcaggtgatgtggaggt
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
               Golden hamster  ======================================================================
                        Mouse  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                         Pika  ======================================================================
                 Weddell seal  ======================================================================
                     Hedgehog  ----------------------------------------------------------------------
                        Shrew  ======================================================================
                   Guinea pig  ======================================================================
                          Pig  ======================================================================
                       Rabbit  ======================================================================
                      Lamprey  ======================================================================
             Cape golden mole  ======================================================================
                     Aardvark  ======================================================================
                   Coelacanth  ======================================================================
       Spiny softshell turtle  ----------------------------------------------------------------------
                      Megabat  ======================================================================
                      Dolphin  ======================================================================
                X. tropicalis  ======================================================================
                 Atlantic cod  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
           Southern platyfish  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
              Tasmanian devil  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                    Zebrafish  ======================================================================
                       Medaka  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
           American alligator  ======================================================================
                   Budgerigar  ======================================================================
                      Opossum  ======================================================================
               Naked mole-rat  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
          Cape elephant shrew  ======================================================================
           Chinese tree shrew  ======================================================================
                     Platypus  ======================================================================
                      Wallaby  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
              Chinese hamster  ======================================================================
                       Tenrec  ======================================================================
                          Cat  ======================================================================
                     Bushbaby  ======================================================================
     Chinese softshell turtle  ======================================================================
                      Ferret   ======================================================================
              Star-nosed mole  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
               Pacific walrus  ======================================================================
                        Panda  ======================================================================
                 Killer whale  ======================================================================
                          Dog  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
                        Horse  ======================================================================
                     Squirrel  ======================================================================
                    Armadillo  ======================================================================
         David's myotis (bat)  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
                          Cow  ======================================================================

                        Human  gggcagggcctctcatgccctgctcatatctgcctaactacctac
                        Chimp  gggcagggcctctcatgccctgctcatgtctgcctaactaccgac
                      Gorilla  gggcagggcctctcatgccctgctcatgtctgcctaactacctac
                    Orangutan  gggcaaggcctctcatgccctgctcatgtctgcctaactacctac
                       Gibbon  gggcagggcctctcatgccctgcttatgtctgcctaactacctac
                       Rhesus  gggcagggcctctcatgccctgctcatgtctgcctaactacctac
          Crab-eating macaque  gggcagggcctctcatgccctgctcatgtctgcctaactacctac
                       Baboon  gggcagggcctctcatgccctgctcatgtctgcctaactacctac
                 Green monkey  gggcagggcctctcatgccctgctcatgtctgcctaactacctac
                     Marmoset  gggcagggcctctcatgccctgctcacgcctgcataactacctac
              Squirrel monkey  gggcagggcctctcatgccatgctcatgcctgcataactacctac
                          Rat  =============================================
                 Prairie vole  =============================================
               Golden hamster  =============================================
                        Mouse  =============================================
       Lesser Egyptian jerboa  =============================================
                         Pika  =============================================
                 Weddell seal  =============================================
                     Hedgehog  ---------------------------------------------
                        Shrew  =============================================
                   Guinea pig  =============================================
                          Pig  =============================================
                       Rabbit  =============================================
                      Lamprey  =============================================
             Cape golden mole  =============================================
                     Aardvark  =============================================
                   Coelacanth  =============================================
       Spiny softshell turtle  ---------------------------------------------
                      Megabat  =============================================
                      Dolphin  =============================================
                X. tropicalis  =============================================
                 Atlantic cod  =============================================
                  Spotted gar  =============================================
                  Stickleback  =============================================
           Southern platyfish  =============================================
       Yellowbelly pufferfish  =============================================
                         Fugu  =============================================
                    Tetraodon  =============================================
                       Turkey  =============================================
                      Chicken  =============================================
                 Mallard duck  =============================================
           Tibetan ground jay  =============================================
                  Zebra finch  =============================================
       White-throated sparrow  =============================================
              Tasmanian devil  =============================================
     Mexican tetra (cavefish)  =============================================
                    Zebrafish  =============================================
                       Medaka  =============================================
          Pundamilia nyererei  =============================================
                  Zebra mbuna  =============================================
        Burton's mouthbreeder  =============================================
          Princess of Burundi  =============================================
                 Nile tilapia  =============================================
               Painted turtle  =============================================
              Green seaturtle  =============================================
           American alligator  =============================================
                   Budgerigar  =============================================
                      Opossum  =============================================
               Naked mole-rat  =============================================
                  Rock pigeon  =============================================
          Collared flycatcher  =============================================
          Medium ground finch  =============================================
                       Lizard  =============================================
             Peregrine falcon  =============================================
                 Saker falcon  =============================================
             Brush-tailed rat  =============================================
                   Chinchilla  =============================================
          Cape elephant shrew  =============================================
           Chinese tree shrew  =============================================
                     Platypus  =============================================
                      Wallaby  =============================================
                      Manatee  =============================================
                     Elephant  =============================================
              Chinese hamster  =============================================
                       Tenrec  =============================================
                          Cat  =============================================
                     Bushbaby  =============================================
     Chinese softshell turtle  =============================================
                      Ferret   =============================================
              Star-nosed mole  =============================================
                Domestic goat  =============================================
                        Sheep  =============================================
             Tibetan antelope  =============================================
               Bactrian camel  =============================================
                       Alpaca  =============================================
               Pacific walrus  =============================================
                        Panda  =============================================
                 Killer whale  =============================================
                          Dog  =============================================
             Black flying-fox  =============================================
             White rhinoceros  =============================================
                        Horse  =============================================
                     Squirrel  =============================================
                    Armadillo  =============================================
         David's myotis (bat)  =============================================
                Big brown bat  =============================================
                     Microbat  =============================================
                          Cow  =============================================

Alignment block 2 of 889 in window, 39345033 - 39345034, 2 bps 
B D                     Human  tg
B D                     Chimp  tg
B D                   Gorilla  tg
B D                 Orangutan  tg
B D                    Gibbon  tg
B D                    Rhesus  tg
B D       Crab-eating macaque  tg
B D                    Baboon  tg
B D              Green monkey  tg
B D                  Marmoset  tg
B D           Squirrel monkey  tg
B D                   Dolphin  ta
                 Killer whale  ta
B D                       Rat  ==
                Prairie vole  ==
              Golden hamster  ==
B D                     Mouse  ==
      Lesser Egyptian jerboa  ==
B D                      Pika  ==
                Weddell seal  ==
B D                  Hedgehog  --
B D                     Shrew  ==
B D                Guinea pig  ==
B D                       Pig  ==
B D                    Rabbit  ==
B D                   Lamprey  ==
            Cape golden mole  ==
                    Aardvark  ==
B D                Coelacanth  ==
  D    Spiny softshell turtle  --
B D                   Megabat  ==
B D             X. tropicalis  ==
B D              Atlantic cod  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                    Turkey  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
B D           Tasmanian devil  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D        American alligator  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
  D       Collared flycatcher  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
            Brush-tailed rat  ==
                  Chinchilla  ==
         Cape elephant shrew  ==
          Chinese tree shrew  ==
B D                  Platypus  ==
B D                   Wallaby  ==
B D                   Manatee  ==
B D                  Elephant  ==
B D           Chinese hamster  ==
B D                    Tenrec  ==
B D                       Cat  ==
B D                  Bushbaby  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
             Star-nosed mole  ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
              Bactrian camel  ==
B D                    Alpaca  ==
              Pacific walrus  ==
B D                     Panda  ==
B D                       Dog  ==
            Black flying-fox  ==
B D          White rhinoceros  ==
B D                     Horse  ==
B D                  Squirrel  ==
B D                 Armadillo  ==
        David's myotis (bat)  ==
               Big brown bat  ==
B D                  Microbat  ==
B D                       Cow  ==

Alignment block 3 of 889 in window, 39345035 - 39345039, 5 bps 
B D                     Human  taaca
B D                     Chimp  taaca
B D                   Gorilla  taaca
B D                 Orangutan  taaca
B D                    Gibbon  taaca
B D                    Rhesus  taaca
B D       Crab-eating macaque  taaca
B D                    Baboon  taaca
B D              Green monkey  taaca
B D                  Marmoset  taaca
B D           Squirrel monkey  taaca
B D                       Pig  tagtc
B D                   Dolphin  tagtc
                 Killer whale  tagtc
B D                       Cat  tagct
B D                       Dog  tagct
B D                     Panda  tagct
               Pacific walrus  tagct
                 Weddell seal  tagct
B D                       Rat  =====
                Prairie vole  =====
              Golden hamster  =====
B D                     Mouse  =====
      Lesser Egyptian jerboa  =====
B D                      Pika  =====
B D                  Hedgehog  -----
B D                     Shrew  =====
B D                Guinea pig  =====
B D                    Rabbit  =====
B D                   Lamprey  =====
            Cape golden mole  =====
                    Aardvark  =====
B D                Coelacanth  =====
  D    Spiny softshell turtle  -----
B D                   Megabat  =====
B D             X. tropicalis  =====
B D              Atlantic cod  =====
                 Spotted gar  =====
B D               Stickleback  =====
          Southern platyfish  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                 Tetraodon  =====
B D                    Turkey  =====
B D                   Chicken  =====
  D              Mallard duck  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
  D    White-throated sparrow  =====
B D           Tasmanian devil  =====
    Mexican tetra (cavefish)  =====
B D                 Zebrafish  =====
B D                    Medaka  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D              Nile tilapia  =====
  D            Painted turtle  =====
  D           Green seaturtle  =====
B D        American alligator  =====
B D                Budgerigar  =====
B D                   Opossum  =====
B D            Naked mole-rat  =====
  D               Rock pigeon  =====
  D       Collared flycatcher  =====
B D       Medium ground finch  =====
B D                    Lizard  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
            Brush-tailed rat  =====
                  Chinchilla  =====
         Cape elephant shrew  =====
          Chinese tree shrew  =====
B D                  Platypus  =====
B D                   Wallaby  =====
B D                   Manatee  =====
B D                  Elephant  =====
B D           Chinese hamster  =====
B D                    Tenrec  =====
B D                  Bushbaby  =====
  D  Chinese softshell turtle  =====
B D                   Ferret   =====
             Star-nosed mole  =====
               Domestic goat  =====
B D                     Sheep  =====
            Tibetan antelope  =====
              Bactrian camel  =====
B D                    Alpaca  =====
            Black flying-fox  =====
B D          White rhinoceros  =====
B D                     Horse  =====
B D                  Squirrel  =====
B D                 Armadillo  =====
        David's myotis (bat)  =====
               Big brown bat  =====
B D                  Microbat  =====
B D                       Cow  =====

Alignment block 4 of 889 in window, 39345040 - 39345040, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  t
B D                  Squirrel  t
B D                       Pig  t
B D                    Alpaca  t
               Bactrian camel  t
B D                   Dolphin  t
                 Killer whale  t
B D                     Horse  t
B D          White rhinoceros  t
B D                       Cat  t
B D                       Dog  t
B D                     Panda  t
               Pacific walrus  t
                 Weddell seal  t
             Black flying-fox  t
B D                   Megabat  t
B D                  Elephant  t
B D                   Manatee  t
             Cape golden mole  t
B D                 Armadillo  t
B D                       Rat  =
                Prairie vole  =
              Golden hamster  =
B D                     Mouse  =
      Lesser Egyptian jerboa  =
B D                      Pika  =
B D                  Hedgehog  -
B D                     Shrew  =
B D                Guinea pig  =
B D                    Rabbit  =
B D                   Lamprey  =
                    Aardvark  =
B D                Coelacanth  =
  D    Spiny softshell turtle  -
B D             X. tropicalis  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
            Brush-tailed rat  =
                  Chinchilla  =
         Cape elephant shrew  =
B D                  Platypus  =
B D                   Wallaby  =
B D           Chinese hamster  =
B D                    Tenrec  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
             Star-nosed mole  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Cow  =

Alignment block 5 of 889 in window, 39345041 - 39345041, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  t
B D                  Squirrel  t
B D                       Pig  t
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  t
                 Killer whale  t
             Tibetan antelope  t
B D                     Sheep  t
                Domestic goat  t
B D                     Horse  t
B D          White rhinoceros  t
B D                       Cat  a
B D                       Dog  g
B D                     Panda  g
               Pacific walrus  g
                 Weddell seal  g
             Black flying-fox  t
B D                   Megabat  t
B D                  Elephant  t
          Cape elephant shrew  t
B D                   Manatee  t
             Cape golden mole  t
B D                    Tenrec  t
B D                 Armadillo  t
B D                       Rat  =
                Prairie vole  =
              Golden hamster  =
B D                     Mouse  =
      Lesser Egyptian jerboa  =
B D                      Pika  =
B D                  Hedgehog  -
B D                     Shrew  =
B D                Guinea pig  =
B D                    Rabbit  =
B D                   Lamprey  =
                    Aardvark  =
B D                Coelacanth  =
  D    Spiny softshell turtle  -
B D             X. tropicalis  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
            Brush-tailed rat  =
                  Chinchilla  =
B D                  Platypus  =
B D                   Wallaby  =
B D           Chinese hamster  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
             Star-nosed mole  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Cow  =

Alignment block 6 of 889 in window, 39345042 - 39345058, 17 bps 
B D                     Human  atgataaatattcaaga
B D                     Chimp  atgataaatattcaaga
B D                   Gorilla  atgataaatattcaaga
B D                 Orangutan  gtgataaatattcaaga
B D                    Gibbon  atgataaatattcaaga
B D                    Rhesus  atgataaatattcaaga
B D       Crab-eating macaque  atgataaatattcaaga
B D                    Baboon  atgataaatattcaaga
B D              Green monkey  atgataaatattcaaga
B D                  Marmoset  atgataaatattcacga
B D           Squirrel monkey  atgataaatattgaaga
B D                  Bushbaby  atgatgaatatccaaga
           Chinese tree shrew  atgat-aatattcaaga
B D                  Squirrel  atcataagtatccaaga
B D                       Pig  agggtaaatatccaaga
B D                    Alpaca  atgataaatatccagga
               Bactrian camel  atgataaatatccagga
B D                   Dolphin  gtgataaatatctaga-
                 Killer whale  gtgataaatatctaga-
             Tibetan antelope  atgataaatatgcaggt
B D                     Sheep  atgataaatatgcaggt
                Domestic goat  atgataaatatgcaggt
B D                     Horse  acgataaatatccaagc
B D          White rhinoceros  aggataaatatccaaga
B D                       Cat  atgataaataacccaga
B D                       Dog  atgataaatacccaaga
B D                     Panda  atggtaaatattcaaga
               Pacific walrus  atgataaatatgcaaga
                 Weddell seal  atgataaatatgcaaga
             Black flying-fox  atgataaatatccaaga
B D                   Megabat  atgataaatatccaaga
                Big brown bat  atggtaagtaaccaag-
         David's myotis (bat)  atgataaatagccaaga
B D                  Microbat  ataataaatagccaaga
B D                  Elephant  atgataaataccaagga
          Cape elephant shrew  ataataaatactcaaga
B D                   Manatee  aggataaataccaaaga
             Cape golden mole  gtgatagatactcacga
B D                    Tenrec  gtgataaacacccaagc
B D                 Armadillo  atgataaatatccaaga
B D                       Rat  =================
                Prairie vole  =================
              Golden hamster  =================
B D                     Mouse  =================
      Lesser Egyptian jerboa  =================
B D                      Pika  =================
B D                  Hedgehog  -----------------
B D                     Shrew  =================
B D                Guinea pig  =================
B D                    Rabbit  =================
B D                   Lamprey  =================
                    Aardvark  =================
B D                Coelacanth  =================
  D    Spiny softshell turtle  -----------------
B D             X. tropicalis  =================
B D              Atlantic cod  =================
                 Spotted gar  =================
B D               Stickleback  =================
          Southern platyfish  =================
      Yellowbelly pufferfish  =================
B D                      Fugu  =================
B D                 Tetraodon  =================
B D                    Turkey  =================
B D                   Chicken  =================
  D              Mallard duck  =================
          Tibetan ground jay  =================
B D               Zebra finch  =================
  D    White-throated sparrow  =================
B D           Tasmanian devil  =================
    Mexican tetra (cavefish)  =================
B D                 Zebrafish  =================
B D                    Medaka  =================
         Pundamilia nyererei  =================
                 Zebra mbuna  =================
       Burton's mouthbreeder  =================
         Princess of Burundi  =================
B D              Nile tilapia  =================
  D            Painted turtle  =================
  D           Green seaturtle  =================
B D        American alligator  =================
B D                Budgerigar  =================
B D                   Opossum  =================
B D            Naked mole-rat  =================
  D               Rock pigeon  =================
  D       Collared flycatcher  =================
B D       Medium ground finch  =================
B D                    Lizard  =================
  D          Peregrine falcon  =================
  D              Saker falcon  =================
            Brush-tailed rat  =================
                  Chinchilla  =================
B D                  Platypus  =================
B D                   Wallaby  =================
B D           Chinese hamster  =================
  D  Chinese softshell turtle  =================
B D                   Ferret   =================
             Star-nosed mole  =================
B D                       Cow  =================

Alignment block 7 of 889 in window, 39345059 - 39345089, 31 bps 
B D                     Human  agcccttt---ctgcctg-t-tctgcaggattgact-
B D                     Chimp  agcccttt---ctgcctg-t-tctgcaggattgact-
B D                   Gorilla  agcccttt---ctgcctg-t-tctgcaggattgact-
B D                 Orangutan  agcccttt---ctgcctg-c-tctgcaggattgact-
B D                    Gibbon  agccgttt---ctgcctg-t-tctgcaggattgact-
B D                    Rhesus  agcccttt---ctgccta-c-tttgcaggattgact-
B D       Crab-eating macaque  agcccttt---ctgccta-c-tttgcaggattgact-
B D                    Baboon  agcccttt---ctgccta-c-tttgcaggattgact-
B D              Green monkey  agcccttt---ctgcctg-c-tttgcaggattgact-
B D                  Marmoset  agccctcc---ctgccct-c-tctgcagtattgact-
B D           Squirrel monkey  agcactcc---ctgccct-g-tctgcaagattgact-
B D                  Bushbaby  aaacttcc---ctccttg-c-tttgcgggattgact-
           Chinese tree shrew  agccttct---ttgcctg-c-cttgcagggtgggtt-
B D                  Squirrel  tgccct-t---ctgcctg-c-tctctcagatcaata-
B D                       Pig  agccctcc---cagcctg-cttttgcaggtttgct--
B D                    Alpaca  agcccacc---cagcttg-c-tttgcaggatggct--
               Bactrian camel  agcccacc---cagcctg-c-tttgcaggatggct--
B D                   Dolphin  agccctcctcccagcctg-c-ttttcaagattgct--
                 Killer whale  agccctcctcccagcctg-c-tcttcaagattgct--
             Tibetan antelope  agtcctcctacaagcccc-c-tttgcaggattgct--
B D                     Sheep  agtcttcctaaaagcttg-c-tttgcaggattgct--
                Domestic goat  agtcctcctacaagcccg-c-tttgcaggattgct--
B D                     Horse  agctctcc---tagcctg-c-tttgcaggattgct--
B D          White rhinoceros  agccctcc---cagcctg-t-tttgcaggattgct--
B D                       Cat  agtccttt---ccgcctg-c-tctgcaggactgct--
B D                       Dog  agaccttt---cagtcag-c-tctgcaggattgct--
B D                     Panda  agcccttt---ctgtctg-c-tctgcaggattgct--
               Pacific walrus  agcccttt---ctctctg-c-tctgcaggattgct--
                 Weddell seal  agcccctt---ctctctg-c-tctgcaggattgct--
             Black flying-fox  agccctcc---cagcctg-c-tttgcaggattgct--
B D                   Megabat  agccctcc---cagcctg-c-tttgcaggattgct--
                Big brown bat  ggccctcc---cagcttg-c-tttgcagggttgct--
         David's myotis (bat)  agccctcc---cagcctg-c-cttgcaggattgct--
B D                  Microbat  agccctcc---cagcctg-c-cttgcagggttgct--
              Star-nosed mole  agccctgt---tggcctt-g-tctgcagggtatct--
B D                  Elephant  agttcccc---ttgcctg-c-tttgcaggattatc-c
          Cape elephant shrew  agttctcc---atgcttt-t-ttgacagaattgtc-t
B D                   Manatee  agttctcc---tggcctg-c-tttgcagaattgtc-c
             Cape golden mole  agttctcc---ttgccag-c-tttgcaggattgtc-c
B D                    Tenrec  agctctcc---ttgctgt-c-tttgcaggattgtc-c
B D                 Armadillo  agccttcc---ctgcctgcc-tcttcaggattg----
B D                       Rat  =====================================
                Prairie vole  =====================================
              Golden hamster  =====================================
B D                     Mouse  =====================================
      Lesser Egyptian jerboa  =====================================
B D                      Pika  =====================================
B D                  Hedgehog  -------------------------------------
B D                     Shrew  =====================================
B D                Guinea pig  =====================================
B D                    Rabbit  =====================================
B D                   Lamprey  =====================================
                    Aardvark  =====================================
B D                Coelacanth  =====================================
  D    Spiny softshell turtle  -------------------------------------
B D             X. tropicalis  =====================================
B D              Atlantic cod  =====================================
                 Spotted gar  =====================================
B D               Stickleback  =====================================
          Southern platyfish  =====================================
      Yellowbelly pufferfish  =====================================
B D                      Fugu  =====================================
B D                 Tetraodon  =====================================
B D                    Turkey  =====================================
B D                   Chicken  =====================================
  D              Mallard duck  =====================================
          Tibetan ground jay  =====================================
B D               Zebra finch  =====================================
  D    White-throated sparrow  =====================================
B D           Tasmanian devil  =====================================
    Mexican tetra (cavefish)  =====================================
B D                 Zebrafish  =====================================
B D                    Medaka  =====================================
         Pundamilia nyererei  =====================================
                 Zebra mbuna  =====================================
       Burton's mouthbreeder  =====================================
         Princess of Burundi  =====================================
B D              Nile tilapia  =====================================
  D            Painted turtle  =====================================
  D           Green seaturtle  =====================================
B D        American alligator  =====================================
B D                Budgerigar  =====================================
B D                   Opossum  =====================================
B D            Naked mole-rat  =====================================
  D               Rock pigeon  =====================================
  D       Collared flycatcher  =====================================
B D       Medium ground finch  =====================================
B D                    Lizard  =====================================
  D          Peregrine falcon  =====================================
  D              Saker falcon  =====================================
            Brush-tailed rat  =====================================
                  Chinchilla  =====================================
B D                  Platypus  =====================================
B D                   Wallaby  =====================================
B D           Chinese hamster  =====================================
  D  Chinese softshell turtle  =====================================
B D                   Ferret   =====================================
B D                       Cow  =====================================

Inserts between block 7 and 8 in window
B D                 Elephant 5bp
         Cape elephant shrew 200bp
B D                  Manatee 5bp
            Cape golden mole 1bp
B D                   Tenrec 4bp

Alignment block 8 of 889 in window, 39345090 - 39345099, 10 bps 
B D                     Human  ---------actctcaatt
B D                     Chimp  ---------actctcaatt
B D                   Gorilla  ---------actctcaatt
B D                 Orangutan  ---------actctgaatt
B D                    Gibbon  ---------actctcaatt
B D                    Rhesus  ---------actctcaatt
B D       Crab-eating macaque  ---------actctcaatt
B D                    Baboon  ---------actctcaatt
B D              Green monkey  ---------actctcaatt
B D                  Marmoset  ---------actctcagtt
B D           Squirrel monkey  ---------actctcaatt
B D                  Bushbaby  ---------acactagatt
           Chinese tree shrew  ---------ac--------
B D                  Squirrel  ---------actctcaa--
B D                  Elephant  --------tcccct-----
B D                   Manatee  --------tcccct-----
B D                    Tenrec  --------atcccc-----
B D                 Armadillo  ttcttgggtcctct-----
B D                       Rat  ===================
                Prairie vole  ===================
              Golden hamster  ===================
B D                     Mouse  ===================
      Lesser Egyptian jerboa  ===================
B D                      Pika  ===================
                Weddell seal  -------------------
B D                  Hedgehog  -------------------
B D                     Shrew  ===================
B D                Guinea pig  ===================
B D                       Pig  -------------------
B D                    Rabbit  ===================
B D                   Lamprey  ===================
            Cape golden mole  ===================
                    Aardvark  ===================
B D                Coelacanth  ===================
  D    Spiny softshell turtle  -------------------
B D                   Megabat  -------------------
B D                   Dolphin  -------------------
B D             X. tropicalis  ===================
B D              Atlantic cod  ===================
                 Spotted gar  ===================
B D               Stickleback  ===================
          Southern platyfish  ===================
      Yellowbelly pufferfish  ===================
B D                      Fugu  ===================
B D                 Tetraodon  ===================
B D                    Turkey  ===================
B D                   Chicken  ===================
  D              Mallard duck  ===================
          Tibetan ground jay  ===================
B D               Zebra finch  ===================
  D    White-throated sparrow  ===================
B D           Tasmanian devil  ===================
    Mexican tetra (cavefish)  ===================
B D                 Zebrafish  ===================
B D                    Medaka  ===================
         Pundamilia nyererei  ===================
                 Zebra mbuna  ===================
       Burton's mouthbreeder  ===================
         Princess of Burundi  ===================
B D              Nile tilapia  ===================
  D            Painted turtle  ===================
  D           Green seaturtle  ===================
B D        American alligator  ===================
B D                Budgerigar  ===================
B D                   Opossum  ===================
B D            Naked mole-rat  ===================
  D               Rock pigeon  ===================
  D       Collared flycatcher  ===================
B D       Medium ground finch  ===================
B D                    Lizard  ===================
  D          Peregrine falcon  ===================
  D              Saker falcon  ===================
            Brush-tailed rat  ===================
                  Chinchilla  ===================
         Cape elephant shrew  ===================
B D                  Platypus  ===================
B D                   Wallaby  ===================
B D           Chinese hamster  ===================
B D                       Cat  -------------------
  D  Chinese softshell turtle  ===================
B D                   Ferret   ===================
             Star-nosed mole  -------------------
               Domestic goat  -------------------
B D                     Sheep  -------------------
            Tibetan antelope  -------------------
              Bactrian camel  -------------------
B D                    Alpaca  -------------------
              Pacific walrus  -------------------
B D                     Panda  -------------------
                Killer whale  -------------------
B D                       Dog  -------------------
            Black flying-fox  -------------------
B D          White rhinoceros  -------------------
B D                     Horse  -------------------
        David's myotis (bat)  -------------------
               Big brown bat  -------------------
B D                  Microbat  -------------------
B D                       Cow  ===================

Alignment block 9 of 889 in window, 39345100 - 39345128, 29 bps 
B D                     Human  gatctactctcagtttcaaagtgatgg----------------------------ag
B D                     Chimp  gatctactctcagtttcaaagtgatgg----------------------------ag
B D                   Gorilla  gatctactctcagtttcaaagtgatgg----------------------------ag
B D                 Orangutan  gatctactctcagtttcaaagtgatgg----------------------------ag
B D                    Gibbon  gatctactctcagtttcaaagtgatgg----------------------------ag
B D                    Rhesus  gatctactgtcagtttcaaagtgatgg----------------------------ag
B D       Crab-eating macaque  gatctactgtcagtttcaaagtgatgg----------------------------ag
B D                    Baboon  gatctactgtcagtttcaaagtgatgg----------------------------ag
B D              Green monkey  gatctactgtcagtttcaaagtgatgg----------------------------ag
B D                  Marmoset  gatctactctcaatttcaaagtaatgg----------------------------ag
B D           Squirrel monkey  gatctactctcagtttcaaagtgatgg----------------------------ag
B D                  Bushbaby  gatctactgtcagttttaaagtgatagtta--tagatatct----tgtttttattgc
           Chinese tree shrew  aaactgtcctcaggttcaaagtggtagggaggtagatatcctaaatgcttttacggc
B D                  Squirrel  ------------gattcagtgtgatag----------------------------ag
B D                    Rabbit  gaactcttcccagttttagagtgatag----------------------------ag
B D                       Pig  -gactaccctcaaattcaaaatgatag----------------------------ac
B D                    Alpaca  -gactactctcaatttcaaagtgatag----------------------------at
               Bactrian camel  -gactactctcagtttcaaagtgatag----------------------------at
B D                   Dolphin  -gactacgctcaatttcaaagtgacag----------------------------at
                 Killer whale  -gactacgctcaatttcaaagtgatag----------------------------at
             Tibetan antelope  -gactgctcccaatttcaaagtgatgg----------------------------ac
B D                     Sheep  -gactgcccccaatttcaaagtgatgg----------------------------ac
                Domestic goat  -gactgcccccaatttcaaagtgatgg----------------------------ac
B D                     Horse  -gagtactct-----------tgatag----------------------------ag
B D          White rhinoceros  -gactactctcaatttcaaagtgatag----------------------------ag
B D                       Cat  -gactacactcagtttcaaagtgatag----------------------------cg
B D                       Dog  -gacca-tctcagtttcaaagcgatag----------------------------ag
B D                     Panda  -gactaccctcagtttcaaagagatac----------------------------ag
               Pacific walrus  -gactaccctcagtttcaaagcaatag----------------------------gg
                 Weddell seal  -gactaccctcagtttcagagctatag----------------------------gg
             Black flying-fox  -gactgctctcattttcaaagtggtag----------------------------ag
B D                   Megabat  -gactgctcttattttcaaagtggtag----------------------------ag
                Big brown bat  -gactgctctcactttcaaagtgatag----------------------------ag
         David's myotis (bat)  -ggctgctctcagtttcaaagtgatag----------------------------ag
B D                  Microbat  -ggctgctctcagtttcaaagtgatag----------------------------ag
              Star-nosed mole  -gatcactctcagtttcagagtgatag----------------------------gg
B D                  Elephant  -gactactcccagtttcagagtgatag----------------------------ag
B D                   Manatee  -gactattctcagtttcaaagtgatag----------------------------ag
             Cape golden mole  --------ctcagtttcaaaatgatag----------------------------ag
B D                    Tenrec  -gagta--ctcaatttcagaatgatag----------------------------ta
B D                 Armadillo  -gacttctctcaatttcaaagtgatag----------------------------ag
B D                       Rat  =========================================================
                Prairie vole  =========================================================
              Golden hamster  =========================================================
B D                     Mouse  =========================================================
      Lesser Egyptian jerboa  =========================================================
B D                      Pika  =========================================================
B D                  Hedgehog  ---------------------------------------------------------
B D                     Shrew  =========================================================
B D                Guinea pig  =========================================================
B D                   Lamprey  =========================================================
                    Aardvark  =========================================================
B D                Coelacanth  =========================================================
  D    Spiny softshell turtle  ---------------------------------------------------------
B D             X. tropicalis  =========================================================
B D              Atlantic cod  =========================================================
                 Spotted gar  =========================================================
B D               Stickleback  =========================================================
          Southern platyfish  =========================================================
      Yellowbelly pufferfish  =========================================================
B D                      Fugu  =========================================================
B D                 Tetraodon  =========================================================
B D                    Turkey  =========================================================
B D                   Chicken  =========================================================
  D              Mallard duck  =========================================================
          Tibetan ground jay  =========================================================
B D               Zebra finch  =========================================================
  D    White-throated sparrow  =========================================================
B D           Tasmanian devil  =========================================================
    Mexican tetra (cavefish)  =========================================================
B D                 Zebrafish  =========================================================
B D                    Medaka  =========================================================
         Pundamilia nyererei  =========================================================
                 Zebra mbuna  =========================================================
       Burton's mouthbreeder  =========================================================
         Princess of Burundi  =========================================================
B D              Nile tilapia  =========================================================
  D            Painted turtle  =========================================================
  D           Green seaturtle  =========================================================
B D        American alligator  =========================================================
B D                Budgerigar  =========================================================
B D                   Opossum  =========================================================
B D            Naked mole-rat  =========================================================
  D               Rock pigeon  =========================================================
  D       Collared flycatcher  =========================================================
B D       Medium ground finch  =========================================================
B D                    Lizard  =========================================================
  D          Peregrine falcon  =========================================================
  D              Saker falcon  =========================================================
            Brush-tailed rat  =========================================================
                  Chinchilla  =========================================================
         Cape elephant shrew  =========================================================
B D                  Platypus  =========================================================
B D                   Wallaby  =========================================================
B D           Chinese hamster  =========================================================
  D  Chinese softshell turtle  =========================================================
B D                   Ferret   =========================================================
B D                       Cow  =========================================================

Inserts between block 9 and 10 in window
B D                      Pig 28bp
B D                   Alpaca 28bp
              Bactrian camel 28bp
B D                  Dolphin 37bp
                Killer whale 37bp
            Tibetan antelope 39bp
B D                    Sheep 39bp
               Domestic goat 39bp
B D                    Horse 28bp
B D         White rhinoceros 28bp
B D                      Cat 27bp
B D                      Dog 28bp
B D                    Panda 28bp
              Pacific walrus 29bp
                Weddell seal 29bp
            Black flying-fox 28bp
B D                  Megabat 28bp
               Big brown bat 37bp
        David's myotis (bat) 37bp
B D                 Microbat 271bp
             Star-nosed mole 8bp
B D                 Elephant 28bp
B D                  Manatee 28bp
            Cape golden mole 29bp
B D                   Tenrec 28bp
B D                Armadillo 28bp

Alignment block 10 of 889 in window, 39345129 - 39345134, 6 bps 
B D                     Human  atc-------------------cag
B D                     Chimp  atc-------------------cag
B D                   Gorilla  atc-------------------cag
B D                 Orangutan  atc-------------------cag
B D                    Gibbon  atc-------------------cag
B D                    Rhesus  atc-------------------cag
B D       Crab-eating macaque  atc-------------------cag
B D                    Baboon  atc-------------------cag
B D              Green monkey  atc-------------------cag
B D                  Marmoset  atc-------------------ctg
B D           Squirrel monkey  atc-------------------ctg
B D                  Bushbaby  att-------------------caa
           Chinese tree shrew  atc-------------------cag
B D                  Squirrel  ata-------------------aaa
B D                    Rabbit  atc-------------------tgg
B D                       Pig  atc-------------------tag
B D                    Alpaca  atc-------------------cag
               Bactrian camel  atc-------------------cag
B D                   Dolphin  atc-------------------cag
                 Killer whale  atc-------------------cag
             Tibetan antelope  atc-------------------cag
B D                     Sheep  atc-------------------cag
                Domestic goat  atc-------------------cag
B D                     Horse  gtc-------------------tag
B D          White rhinoceros  gtc-------------------cag
B D                       Cat  ----------------------cag
B D                       Dog  atc-------------------caa
B D                     Panda  att-------------------cag
               Pacific walrus  ata-------------------cag
                 Weddell seal  atc-------------------cag
             Black flying-fox  acc-------------------cag
B D                   Megabat  acc-------------------cag
                Big brown bat  atc-------------------cag
         David's myotis (bat)  atc-------------------cag
B D                  Microbat  atc-------------------cag
              Star-nosed mole  accttaattgtttctgctgtgtcag
B D                  Elephant  atc-------------------caa
          Cape elephant shrew  ata-------------------cac
B D                   Manatee  atg-------------------cag
             Cape golden mole  acc-------------------tag
B D                    Tenrec  gtc-------------------gag
B D                 Armadillo  att-------------------cag
B D                       Rat  =========================
                Prairie vole  =========================
              Golden hamster  =========================
B D                     Mouse  =========================
      Lesser Egyptian jerboa  =========================
B D                      Pika  =========================
B D                  Hedgehog  -------------------------
B D                     Shrew  =========================
B D                Guinea pig  =========================
B D                   Lamprey  =========================
                    Aardvark  =========================
B D                Coelacanth  =========================
  D    Spiny softshell turtle  -------------------------
B D             X. tropicalis  =========================
B D              Atlantic cod  =========================
                 Spotted gar  =========================
B D               Stickleback  =========================
          Southern platyfish  =========================
      Yellowbelly pufferfish  =========================
B D                      Fugu  =========================
B D                 Tetraodon  =========================
B D                    Turkey  =========================
B D                   Chicken  =========================
  D              Mallard duck  =========================
          Tibetan ground jay  =========================
B D               Zebra finch  =========================
  D    White-throated sparrow  =========================
B D           Tasmanian devil  =========================
    Mexican tetra (cavefish)  =========================
B D                 Zebrafish  =========================
B D                    Medaka  =========================
         Pundamilia nyererei  =========================
                 Zebra mbuna  =========================
       Burton's mouthbreeder  =========================
         Princess of Burundi  =========================
B D              Nile tilapia  =========================
  D            Painted turtle  =========================
  D           Green seaturtle  =========================
B D        American alligator  =========================
B D                Budgerigar  =========================
B D                   Opossum  =========================
B D            Naked mole-rat  =========================
  D               Rock pigeon  =========================
  D       Collared flycatcher  =========================
B D       Medium ground finch  =========================
B D                    Lizard  =========================
  D          Peregrine falcon  =========================
  D              Saker falcon  =========================
            Brush-tailed rat  =========================
                  Chinchilla  =========================
B D                  Platypus  =========================
B D                   Wallaby  =========================
B D           Chinese hamster  =========================
  D  Chinese softshell turtle  =========================
B D                   Ferret   =========================
B D                       Cow  =========================

Inserts between block 10 and 11 in window
B D                 Squirrel 28bp
B D                   Rabbit 32bp

Alignment block 11 of 889 in window, 39345135 - 39345136, 2 bps 
B D                     Human  ta
B D                     Chimp  ta
B D                   Gorilla  ta
B D                 Orangutan  ta
B D                    Gibbon  ta
B D                    Rhesus  ta
B D       Crab-eating macaque  ta
B D                    Baboon  ta
B D              Green monkey  ta
B D                  Marmoset  ta
B D           Squirrel monkey  ta
B D                  Bushbaby  ta
           Chinese tree shrew  tg
B D                  Squirrel  ta
B D            Naked mole-rat  ta
                   Chinchilla  ta
             Brush-tailed rat  ta
B D                    Rabbit  ta
B D                       Pig  ta
B D                    Alpaca  ta
               Bactrian camel  ta
B D                   Dolphin  ta
                 Killer whale  ta
             Tibetan antelope  ta
B D                     Sheep  ta
                Domestic goat  ta
B D                     Horse  ta
B D          White rhinoceros  ta
B D                       Cat  ta
B D                       Dog  tg
B D                     Panda  tg
               Pacific walrus  tg
                 Weddell seal  tg
             Black flying-fox  tg
B D                   Megabat  tg
                Big brown bat  tg
         David's myotis (bat)  ta
B D                  Microbat  tg
              Star-nosed mole  ta
B D                  Elephant  ca
          Cape elephant shrew  cg
B D                   Manatee  ca
             Cape golden mole  ca
B D                    Tenrec  ca
B D                 Armadillo  ca
B D                       Rat  ==
                Prairie vole  ==
              Golden hamster  ==
B D                     Mouse  ==
      Lesser Egyptian jerboa  ==
B D                      Pika  ==
B D                  Hedgehog  --
B D                     Shrew  ==
B D                Guinea pig  ==
B D                   Lamprey  ==
                    Aardvark  ==
B D                Coelacanth  ==
  D    Spiny softshell turtle  --
B D             X. tropicalis  ==
B D              Atlantic cod  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                    Turkey  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
B D           Tasmanian devil  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D        American alligator  ==
B D                Budgerigar  ==
B D                   Opossum  ==
  D               Rock pigeon  ==
  D       Collared flycatcher  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
B D                  Platypus  ==
B D                   Wallaby  ==
B D           Chinese hamster  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
B D                       Cow  ==

Alignment block 12 of 889 in window, 39345137 - 39345179, 43 bps 
B D                     Human  taacataattgataatcactaga----tgtggg-aagattacttgt-tt
B D                     Chimp  taacataattgataatcactaga----tgtggg-aagattacttgt-tt
B D                   Gorilla  taacataattgataatcactaga----tgtggg-aagattacttgt-tt
B D                 Orangutan  taacataattgataatcactaaa----tatggg-aagattgcttgc-tt
B D                    Gibbon  taacataattgataatcactaaa----tgtggg-aagattacttgc-tt
B D                    Rhesus  taaaataaatgataatcaccgaatgtttgtagg-aagattacttgc-tt
B D       Crab-eating macaque  taaaataactgataatcaccgaatgtttgtagg-aagattacttgc-tt
B D                    Baboon  taacataactgataatcaccgaatgtttgtagg-aagattacttgc-tt
B D              Green monkey  taacataactgataatcaccgaatgtttgtagg-aagattacttgc-tt
B D                  Marmoset  ta-----------------------------------attacatgc-tt
B D           Squirrel monkey  ta-----------------------------------attatatgc-tt
B D                  Bushbaby  taacatagttgatgatcactaaatgtctatggg-gaaattcc-----tt
           Chinese tree shrew  tgacgtaactgatggtcaccaaatgg-ttttgg-aaaagcgcatgc-tt
B D                  Squirrel  ta--acagtgaacaatcactaaatgtttgggga-aagattgcatgt-tt
B D            Naked mole-rat  taacatagttgacgatcactaaatgtttgtga--gaaattacatga-tt
B D                Guinea pig  taacatagttaatgatcactaaatgttt--------------atgg-tt
                   Chinchilla  taatatagttgatgaccactaagtgtttatgag-gaaattacatga-tt
             Brush-tailed rat  ta--acagttgaggatcactaaatgtttatgag-gaaattacatga-tt
B D                    Rabbit  taatatagttaatgaccactaaatgtgtatgtg-aaaattttgtgt-tt
B D                       Pig  taacatagctgatgatggctaaatgtttgtgggaaaaattgcatgcctt
B D                    Alpaca  taacataactcatgatcactaagtgtttgtggg-gaaattgcatgcttt
               Bactrian camel  taacataactcatgatcactaagtgtttgtggg-gaaattgcatgcttt
B D                   Dolphin  taacatagttgatgatcactaaatgtttgtgag-aaaattgcatgcttt
                 Killer whale  taacatagttgatgatcactaaatgtttgtggg-aaaattgcatgcttt
             Tibetan antelope  taacatgggtaatgattactaaaagtttgtggg-aatattgcatgcttt
B D                     Sheep  taatatgggtaatgattactaaaagtttgtggg-aatattgcatgcttt
                Domestic goat  taatatgggtaatgattactaaaagtttgtggg-aatattgcatgcttt
B D                     Horse  taacatggctggtaatcactaaatgtttgtggg-aaaactgcatgc-tt
B D          White rhinoceros  taacatggctgatgatcactaaatgtttgtgga-aaaatttcatgc-tt
B D                       Cat  ttacatggctgatgatcactaactgtttgtgga-aattttgcatgc-tt
B D                       Dog  ttacatagctgatgatctctaaatggttatggg-aaagttgcgtgc-tt
B D                     Panda  ttacatagctgatgaccactaaatgtttatgga-aaaattgcatac-tt
               Pacific walrus  ttaaatagctgatgaccactaaatgtttgtgga-aaaattgcatgc-tt
                 Weddell seal  ttaaatagctgatgaccactaaatgtttgtgga-aaaaatgcatgc-tt
             Black flying-fox  taatatatctgatggtcactaaacgtttgtgga-aaaattacatga-tt
B D                   Megabat  taatatatatgatggtcactaaacgtttgtgga-aaaattacatga-tt
                Big brown bat  ta--acagctggtggccactaaatttttgtggg-aaaagtgcatgc-tt
         David's myotis (bat)  ta--acagctgatggctactatatttttgtggg-aaaattgcatgc-tt
B D                  Microbat  ta--acagctgatggctactacatttttgtggg-aaaattgcatgc-tt
              Star-nosed mole  taacatagctggtgattgctaaa----tgtggg-aaaattacatg--tt
B D                  Elephant  taacacggctgatgaaaaggaaatgtttgcaga-aaaattgcatac-tt
          Cape elephant shrew  taacatggttgataaaaaggaaacatttatggg-aaaaatccagat-gt
B D                   Manatee  taacatggttgataaaaaagaaatgtttgtgga-aaaattgcatac-tt
             Cape golden mole  caatatgattgataattgggaaatgtttatggg-aaaaatgcatct-tt
B D                    Tenrec  tagcatggttgataaaaagtaaatg-ctatggg-ggaaaagcatac-tt
B D                 Armadillo  taacatagttcat---tgctaaatgtttgtgg--aaaattgcattc-tt
B D                       Rat  =================================================
                Prairie vole  =================================================
              Golden hamster  =================================================
B D                     Mouse  =================================================
      Lesser Egyptian jerboa  =================================================
B D                      Pika  =================================================
B D                  Hedgehog  -------------------------------------------------
B D                     Shrew  =================================================
B D                   Lamprey  =================================================
                    Aardvark  =================================================
B D                Coelacanth  =================================================
  D    Spiny softshell turtle  -------------------------------------------------
B D             X. tropicalis  =================================================
B D              Atlantic cod  =================================================
                 Spotted gar  =================================================
B D               Stickleback  =================================================
          Southern platyfish  =================================================
      Yellowbelly pufferfish  =================================================
B D                      Fugu  =================================================
B D                 Tetraodon  =================================================
B D                    Turkey  =================================================
B D                   Chicken  =================================================
  D              Mallard duck  =================================================
          Tibetan ground jay  =================================================
B D               Zebra finch  =================================================
  D    White-throated sparrow  =================================================
B D           Tasmanian devil  =================================================
    Mexican tetra (cavefish)  =================================================
B D                 Zebrafish  =================================================
B D                    Medaka  =================================================
         Pundamilia nyererei  =================================================
                 Zebra mbuna  =================================================
       Burton's mouthbreeder  =================================================
         Princess of Burundi  =================================================
B D              Nile tilapia  =================================================
  D            Painted turtle  =================================================
  D           Green seaturtle  =================================================
B D        American alligator  =================================================
B D                Budgerigar  =================================================
B D                   Opossum  =================================================
  D               Rock pigeon  =================================================
  D       Collared flycatcher  =================================================
B D       Medium ground finch  =================================================
B D                    Lizard  =================================================
  D          Peregrine falcon  =================================================
  D              Saker falcon  =================================================
B D                  Platypus  =================================================
B D                   Wallaby  =================================================
B D           Chinese hamster  =================================================
  D  Chinese softshell turtle  =================================================
B D                   Ferret   =================================================
B D                       Cow  =================================================

Alignment block 13 of 889 in window, 39345180 - 39345205, 26 bps 
B D                     Human  ttaatag----tct-gaaaacagat-gatttt
B D                     Chimp  ttaatag----tct-gaaaacagat-gatttt
B D                   Gorilla  ttaatag----tct-gaaaacagat-gatttt
B D                 Orangutan  ttaatag----tct-gaaaacagat-gatttt
B D                    Gibbon  ttaatag----tct-gaaaacagaa-gatttt
B D                    Rhesus  ttaatag----tct-gaaaacagat-gatttt
B D       Crab-eating macaque  ttaatag----tct-gaaaacagat-gatttt
B D                    Baboon  ttaatag----tct-gaaaacagat-gatttt
B D              Green monkey  ttaatag----tct-gaaaacagat-gatttt
B D                  Marmoset  ttaatag----tat-gaaaacagat-gatttt
B D           Squirrel monkey  ttaatag----tat-gaaaacagat-gatttt
B D                  Bushbaby  ttaat----------------acat-gatttt
           Chinese tree shrew  ttaattg----tct-gaaaacaaat-gatttt
B D                  Squirrel  ttgatta----tct-gaaagcagat-gacttt
B D            Naked mole-rat  ttcattg----tct-aaaaac--gt-gact--
B D                Guinea pig  ttaattg----tctgaaaaacagat-tacttt
                   Chinchilla  ttaattg----tct-aaaaacagat-gacttc
             Brush-tailed rat  tttgtta----tct-aaaaacagat-gacttg
B D                    Rabbit  ttggtga----tct-gaagacaaat-gacttt
B D                       Pig  ttaattg----tct-aaatgcagataaattct
B D                    Alpaca  ttcattg----tct-aaaaacagatacatttt
               Bactrian camel  ttcattg----tct-aaaaacagatacatttt
B D                   Dolphin  ttaattg----tct-gaaaacagataaagtct
                 Killer whale  ttaattg----tct-gaaaacagataaagtct
             Tibetan antelope  ttaattg----tct-aaaagcagataaattct
B D                     Sheep  ttaattg----tct-aaaagcaggtaaattct
                Domestic goat  ttaattg----tct-aaaagcaggtaaattct
B D                     Horse  ttaattg----cct-gaaaacagat-aattct
B D          White rhinoceros  ttaattg----tct-gaaaacagat-aattat
B D                       Cat  ttaattg----cct-gaaaacagataaatgct
B D                       Dog  ttaattg----tct-gaaaacagataaagtct
B D                     Panda  ttaattg----tct-gaaaacagataaattct
               Pacific walrus  ttaattg----tct-taaagcagataaattct
                 Weddell seal  ttaattg----tct-taaagcagataaattct
             Black flying-fox  ttaatta----tct-gaaaacagat-actatt
B D                   Megabat  ttaatta----tct-gaaaacagat-actatt
                Big brown bat  ttaatgg----tct-gaaaatagat-aattat
         David's myotis (bat)  ttaatgg----tct-ggaaatagat-aattat
B D                  Microbat  ttaatgg----tct-gaaaatagat-aattat
              Star-nosed mole  ttaattg----tgt-gatagcaggt-aattct
B D                  Elephant  ctgattgattttct-gaaa----at-tattct
          Cape elephant shrew  ttaattgattttct-gaac----tt-aattat
B D                   Manatee  ttcattgattttct-gaaaatt-at-tattct
             Cape golden mole  ttaattgactttct-aaaaactatt-cactgt
B D                    Tenrec  ttcactgattatct-gaaaattatt-aatttt
B D                 Armadillo  ttaattgaccatct-gaaaataaat-aattct
B D                   Wallaby  tcagtga----ctt-gggaagtggc-agctct
B D                       Rat  ================================
                Prairie vole  ================================
              Golden hamster  ================================
B D                     Mouse  ================================
      Lesser Egyptian jerboa  ================================
B D                      Pika  ================================
B D                  Hedgehog  --------------------------------
B D                     Shrew  ================================
B D                   Lamprey  ================================
                    Aardvark  ================================
B D                Coelacanth  ================================
  D    Spiny softshell turtle  --------------------------------
B D             X. tropicalis  ================================
B D              Atlantic cod  ================================
                 Spotted gar  ================================
B D               Stickleback  ================================
          Southern platyfish  ================================
      Yellowbelly pufferfish  ================================
B D                      Fugu  ================================
B D                 Tetraodon  ================================
B D                    Turkey  ================================
B D                   Chicken  ================================
  D              Mallard duck  ================================
          Tibetan ground jay  ================================
B D               Zebra finch  ================================
  D    White-throated sparrow  ================================
B D           Tasmanian devil  ================================
    Mexican tetra (cavefish)  ================================
B D                 Zebrafish  ================================
B D                    Medaka  ================================
         Pundamilia nyererei  ================================
                 Zebra mbuna  ================================
       Burton's mouthbreeder  ================================
         Princess of Burundi  ================================
B D              Nile tilapia  ================================
  D            Painted turtle  ================================
  D           Green seaturtle  ================================
B D        American alligator  ================================
B D                Budgerigar  ================================
B D                   Opossum  ================================
  D               Rock pigeon  ================================
  D       Collared flycatcher  ================================
B D       Medium ground finch  ================================
B D                    Lizard  ================================
  D          Peregrine falcon  ================================
  D              Saker falcon  ================================
B D                  Platypus  ================================
B D           Chinese hamster  ================================
  D  Chinese softshell turtle  ================================
B D                   Ferret   ================================
B D                       Cow  ================================

Alignment block 14 of 889 in window, 39345206 - 39345233, 28 bps 
B D                     Human  agtg-tttg--------gacag-----------------------------------tttttac---tac
B D                     Chimp  agtg-tttg--------gacag-----------------------------------tttttac---tac
B D                   Gorilla  agtg-tttg--------gacag-----------------------------------tttttac---tac
B D                 Orangutan  agtg-tttg--------gacag-----------------------------------tttttac---tac
B D                    Gibbon  agtg-tttg--------gacag-----------------------------------tttttac---tac
B D                    Rhesus  agtg-tttg--------gatag-----------------------------------tttttac---tac
B D       Crab-eating macaque  agtg-tttg--------gatag-----------------------------------tttttac---tac
B D                    Baboon  agtg-tttg--------gatag-----------------------------------tttttac---tac
B D              Green monkey  aatg-tttg--------gatag-----------------------------------tttttac---tac
B D                  Marmoset  agtg-tttg--------gacag------------------------------------ttttat---tac
B D           Squirrel monkey  agtg-ttag--------gacag-----------------------------------tttttat---tac
B D                  Bushbaby  agtg-tttg--------gacag-----------------------------------tt-----------
           Chinese tree shrew  agtgttttg--------aacag-----------------------------------tttttac---tat
B D                  Squirrel  actg-tttg--------gacag-----------------------------------tgtttat---tac
B D            Naked mole-rat  attg-tttg--------gacag-----------------------------------tttgtgc---tac
B D                Guinea pig  actg-tttg--------aacag-----------------------------------tttctgc---tac
                   Chinchilla  attg-tttg--------gacag-----------------------------------tttctgc---tac
             Brush-tailed rat  attg-tttg--------gacag-----------------------------------tttttgc---tac
B D                    Rabbit  aatg-tttg--------acca-------------------------------------tattac---tac
B D                       Pig  aata-ttta--------ggcagt----------------------------------tttta-c---tgc
B D                    Alpaca  agtg-gtca--------ggcagc----------------------------------ttttt-c---tgc
               Bactrian camel  agtg-ttca--------ggcagc----------------------------------ttttt-c---tgc
B D                   Dolphin  agtg-ttta--------ggcagt----------------------------------tttctac---tgc
                 Killer whale  agtg-ttta--------ggcggt----------------------------------tttctac---tgc
             Tibetan antelope  agtg-ttta--------ggcagt----------------------------------tttttac---tgc
B D                     Sheep  agtg-ttta--------ggcagt----------------------------------tttttac---tgc
                Domestic goat  agtg-ttta--------ggcagt----------------------------------tctttac---tgc
B D                     Horse  agta-ttta--------ggctg-----------------------------------tttttacataagc
B D          White rhinoceros  agta-ttta--------ggcag-----------------------------------tttttac---tgc
B D                       Cat  agtg-ttta--------ggcagg----------------------------------ttttagt----gc
B D                       Dog  agtg-ctta--------ggtggg----------------------------------tatgtat------
B D                     Panda  agtg-ttta--------ggtaggggtgtgtgtgtgtgtgtgtgtgtatatatatatatatatat------
               Pacific walrus  agtg--tta--------ggtagg------------------------------tatatatatat------
                 Weddell seal  agtg--tta--------ggtagg----------------------------------tatatat------
             Black flying-fox  agtg-ttta--------ggcag-----------------------------------tttttac---tgc
B D                   Megabat  agtg-ttta--------ggcag-----------------------------------tttttac---tgc
                Big brown bat  agtg-ttta--------ggcac-----------------------------------ttattac---tgc
         David's myotis (bat)  tgtc-ttta--------ggcac-----------------------------------ttattac---tgc
B D                  Microbat  agtg-ttta--------gacac-----------------------------------ttattac---tgc
              Star-nosed mole  agtg-ttta--------gacag-----------------------------------ttcttaa---tgc
B D                  Elephant  agcg-ttt---------agcag-----------------------------------tttt-ac---tgc
          Cape elephant shrew  agtg-tttttacttctagccag-----------------------------------ttttaac---ttc
B D                   Manatee  agtg-tttt--------ggcag-----------------------------------cctttac---tgc
             Cape golden mole  agtg-ttgt--------aacaa-----------------------------------tttttat---ttt
B D                    Tenrec  agcg-tttt--------gacaa-----------------------------------ctttaat---cat
                     Aardvark  agtg-tttt--------gacag-----------------------------------tttttat---tgc
B D                 Armadillo  aatg-tttg--------ggccg-----------------------------------tttttac---ttc
B D                   Wallaby  catc-tttg--------gcccc-----------------------------------tcttccc---tgc
B D                       Rat  ======================================================================
                Prairie vole  ======================================================================
              Golden hamster  ======================================================================
B D                     Mouse  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                      Pika  ======================================================================
B D                  Hedgehog  ----------------------------------------------------------------------
B D                     Shrew  ======================================================================
B D                   Lamprey  ======================================================================
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D           Tasmanian devil  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
B D                Budgerigar  ======================================================================
B D                   Opossum  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
B D                  Platypus  ======================================================================
B D           Chinese hamster  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                       Cow  ======================================================================

                        Human  tttaa
                        Chimp  tttaa
                      Gorilla  tttaa
                    Orangutan  tttaa
                       Gibbon  tttaa
                       Rhesus  tttaa
          Crab-eating macaque  tttaa
                       Baboon  tttaa
                 Green monkey  tttaa
                     Marmoset  tttaa
              Squirrel monkey  tttaa
                     Bushbaby  -----
           Chinese tree shrew  tttaa
                     Squirrel  tttaa
               Naked mole-rat  tttaa
                   Guinea pig  tttaa
                   Chinchilla  tttaa
             Brush-tailed rat  tttaa
                       Rabbit  tttaa
                          Pig  tttaa
                       Alpaca  tttaa
               Bactrian camel  tttaa
                      Dolphin  tttaa
                 Killer whale  tttaa
             Tibetan antelope  ttta-
                        Sheep  ttta-
                Domestic goat  ttta-
                        Horse  tttaa
             White rhinoceros  tttaa
                          Cat  tttaa
                          Dog  -----
                        Panda  -----
               Pacific walrus  -----
                 Weddell seal  -----
             Black flying-fox  tttaa
                      Megabat  tttaa
                Big brown bat  tttaa
         David's myotis (bat)  tttaa
                     Microbat  tttaa
              Star-nosed mole  tttaa
                     Elephant  tttaa
          Cape elephant shrew  tttaa
                      Manatee  tttaa
             Cape golden mole  ggtag
                       Tenrec  tttaa
                     Aardvark  tttca
                    Armadillo  tttaa
                      Wallaby  attca
                          Rat  =====
                 Prairie vole  =====
               Golden hamster  =====
                        Mouse  =====
       Lesser Egyptian jerboa  =====
                         Pika  =====
                     Hedgehog  -----
                        Shrew  =====
                      Lamprey  =====
                   Coelacanth  =====
       Spiny softshell turtle  -----
                X. tropicalis  =====
                 Atlantic cod  =====
                  Spotted gar  =====
                  Stickleback  =====
           Southern platyfish  =====
       Yellowbelly pufferfish  =====
                         Fugu  =====
                    Tetraodon  =====
                       Turkey  =====
                      Chicken  =====
                 Mallard duck  =====
           Tibetan ground jay  =====
                  Zebra finch  =====
       White-throated sparrow  =====
              Tasmanian devil  =====
     Mexican tetra (cavefish)  =====
                    Zebrafish  =====
                       Medaka  =====
          Pundamilia nyererei  =====
                  Zebra mbuna  =====
        Burton's mouthbreeder  =====
          Princess of Burundi  =====
                 Nile tilapia  =====
               Painted turtle  =====
              Green seaturtle  =====
           American alligator  =====
                   Budgerigar  =====
                      Opossum  =====
                  Rock pigeon  =====
          Collared flycatcher  =====
          Medium ground finch  =====
                       Lizard  =====
             Peregrine falcon  =====
                 Saker falcon  =====
                     Platypus  =====
              Chinese hamster  =====
     Chinese softshell turtle  =====
                      Ferret   =====
                          Cow  =====

Inserts between block 14 and 15 in window
            Cape golden mole 384bp

Alignment block 15 of 889 in window, 39345234 - 39345266, 33 bps 
B D                     Human  gggaaaa-atataactata--acaagaaagtctgag
B D                     Chimp  gggaaaa-atataactata--acaagaaagtctgag
B D                   Gorilla  gggaaaa-atataactata--acaagaaagtctgag
B D                 Orangutan  gggaaaa-atgtaactata--acaagaaagtctgag
B D                    Gibbon  ggaaaaa-atataactatt--acaagaaagtctgag
B D                    Rhesus  gggaaaa-atataactataacacaagaaagtctgag
B D       Crab-eating macaque  gggaaaa-atataactataacacaagaaagtctgag
B D                    Baboon  gggaaaa-atataactataacacaagaaagtctgag
B D              Green monkey  gggaaaa-atataactataacacaagaaagtcggag
B D                  Marmoset  gagaaca-ata----tataatacaaggaagtctgag
B D           Squirrel monkey  gggaaca-ata----tataatatgagaaagtctgag
B D                  Bushbaby  ---------------------acaagaa---ctg--
           Chinese tree shrew  gggag-a-atctgactaacatgtaagcaagtatgac
B D                  Squirrel  gggagtg-aaa----------ataagaaagtctgac
B D            Naked mole-rat  gagaaca-gta--actattttataagaaaatctgac
B D                Guinea pig  gagaaca-ata--actattttataagaaaatctggg
                   Chinchilla  gggaaca-ata--actatcttataagaaaatctgac
             Brush-tailed rat  ggaaaca-gta--actattttataagaaaatctgac
B D                    Rabbit  gagagca-atatagctaatatacaagaagtgtaca-
B D                       Pig  tagagca-gtataacttttatattaaaaagtttgac
B D                    Alpaca  aggagca-atacaactattacatcagaaagtctggc
               Bactrian camel  aggagca-atacaactattacataagaaagtctggc
B D                   Dolphin  agaagca-atataactattatataagaaagtctgac
                 Killer whale  agaagca-atataactattatataagaaagtctgac
             Tibetan antelope  ------------------------------tctgac
B D                     Sheep  ------------------------------tctgac
                Domestic goat  ------------------------------tctgac
B D                     Horse  gggagca-atgtaacttttatgtaagaaagtctgac
B D          White rhinoceros  gggagca-atataacttttatataggaaagtctgac
B D                       Cat  ggaagca-atggaactgttatataagaaggtctcgc
B D                       Dog  --------atataactattatgtaagaaagtctgac
B D                     Panda  --------atataactgttatataagaaagtctgac
               Pacific walrus  --------atgtaactgttatataagaaagtctgac
                 Weddell seal  --------atgtaactgttatataagaaagtctgac
             Black flying-fox  gggagca-atataac----acataagaaagtctgac
B D                   Megabat  gggagca-atataac----acataagaaagtctgac
                Big brown bat  gggagca-atataactattatataagaaagtctgac
         David's myotis (bat)  gggagca-atgtaactattatataagaaa----gac
B D                  Microbat  gggagca-atgcaactattatataagaaa----gac
              Star-nosed mole  gggagca-atgttccttttatttaag---------c
B D                  Elephant  aggagcatatataa-----------gcaagtctgac
          Cape elephant shrew  aggaaca-atataa------------taagtctgac
B D                   Manatee  aggcgca-atataa--------taagcaagtctgac
B D                    Tenrec  agattca-atgaaa------------taagtcttaa
                     Aardvark  agaaaca-aagtaa------------taagtctaac
B D                 Armadillo  ggtaatg-atataactattgtacaaggaagtctgac
B D                   Wallaby  ggcagta-aggcatctgtcacacggg-aagtctgtg
B D                       Rat  ====================================
                Prairie vole  ====================================
              Golden hamster  ====================================
B D                     Mouse  ====================================
      Lesser Egyptian jerboa  ====================================
B D                      Pika  ====================================
B D                  Hedgehog  ------------------------------------
B D                     Shrew  ====================================
B D                   Lamprey  ====================================
            Cape golden mole  ====================================
B D                Coelacanth  ====================================
  D    Spiny softshell turtle  ------------------------------------
B D             X. tropicalis  ====================================
B D              Atlantic cod  ====================================
                 Spotted gar  ====================================
B D               Stickleback  ====================================
          Southern platyfish  ====================================
      Yellowbelly pufferfish  ====================================
B D                      Fugu  ====================================
B D                 Tetraodon  ====================================
B D                    Turkey  ====================================
B D                   Chicken  ====================================
  D              Mallard duck  ====================================
          Tibetan ground jay  ====================================
B D               Zebra finch  ====================================
  D    White-throated sparrow  ====================================
B D           Tasmanian devil  ====================================
    Mexican tetra (cavefish)  ====================================
B D                 Zebrafish  ====================================
B D                    Medaka  ====================================
         Pundamilia nyererei  ====================================
                 Zebra mbuna  ====================================
       Burton's mouthbreeder  ====================================
         Princess of Burundi  ====================================
B D              Nile tilapia  ====================================
  D            Painted turtle  ====================================
  D           Green seaturtle  ====================================
B D        American alligator  ====================================
B D                Budgerigar  ====================================
B D                   Opossum  ====================================
  D               Rock pigeon  ====================================
  D       Collared flycatcher  ====================================
B D       Medium ground finch  ====================================
B D                    Lizard  ====================================
  D          Peregrine falcon  ====================================
  D              Saker falcon  ====================================
B D                  Platypus  ====================================
B D           Chinese hamster  ====================================
  D  Chinese softshell turtle  ====================================
B D                   Ferret   ====================================
B D                       Cow  ====================================

Inserts between block 15 and 16 in window
B D               Guinea pig 160bp
B D         White rhinoceros 4bp

Alignment block 16 of 889 in window, 39345267 - 39345272, 6 bps 
B D                     Human  tgt-------aat
B D                     Chimp  tgt-------aat
B D                   Gorilla  tgt-------aat
B D                 Orangutan  tgt-------aat
B D                    Gibbon  tgt-------a--
B D                    Rhesus  tgt-------aat
B D       Crab-eating macaque  tgt-------aat
B D                    Baboon  tgt-------aat
B D              Green monkey  tgt-------aat
B D                  Marmoset  tgt-------aat
B D           Squirrel monkey  tgt-------aat
B D                  Bushbaby  -tt-------aat
           Chinese tree shrew  cgt-------agt
B D                  Squirrel  tat-------aat
B D            Naked mole-rat  tat-------aat
                   Chinchilla  tataatctataat
             Brush-tailed rat  tat----------
B D                    Rabbit  ---------tgat
B D                       Pig  tgt-------aat
B D                    Alpaca  tgt-------aac
               Bactrian camel  tgt-------aac
B D                   Dolphin  tgt-------aat
                 Killer whale  tgt-------aat
             Tibetan antelope  tgt-------aat
B D                     Sheep  tgt-------aat
                Domestic goat  tgt-------aat
B D                     Horse  tgt-------aat
B D          White rhinoceros  tgt-------aat
B D                       Cat  tgt-------agt
B D                       Dog  tgg-------aat
B D                     Panda  tgt-------aat
               Pacific walrus  tgt-------aat
                 Weddell seal  tgt-------aat
             Black flying-fox  tat-------aat
B D                   Megabat  tat-------aat
                Big brown bat  tgt-------aat
         David's myotis (bat)  tgt-------aat
B D                  Microbat  tgt-------aat
              Star-nosed mole  tgt-------aat
B D                  Elephant  tgt-------aat
          Cape elephant shrew  taa-------aat
B D                   Manatee  tgt-------aac
B D                    Tenrec  ctg-------aat
                     Aardvark  tgt-------aat
B D                 Armadillo  tgt-------aat
B D                   Wallaby  tat-------aat
B D                       Rat  =============
                Prairie vole  =============
              Golden hamster  =============
B D                     Mouse  =============
      Lesser Egyptian jerboa  =============
B D                      Pika  =============
B D                  Hedgehog  -------------
B D                     Shrew  =============
B D                Guinea pig  =============
B D                   Lamprey  =============
            Cape golden mole  =============
B D                Coelacanth  =============
  D    Spiny softshell turtle  -------------
B D             X. tropicalis  =============
B D              Atlantic cod  =============
                 Spotted gar  =============
B D               Stickleback  =============
          Southern platyfish  =============
      Yellowbelly pufferfish  =============
B D                      Fugu  =============
B D                 Tetraodon  =============
B D                    Turkey  =============
B D                   Chicken  =============
  D              Mallard duck  =============
          Tibetan ground jay  =============
B D               Zebra finch  =============
  D    White-throated sparrow  =============
B D           Tasmanian devil  =============
    Mexican tetra (cavefish)  =============
B D                 Zebrafish  =============
B D                    Medaka  =============
         Pundamilia nyererei  =============
                 Zebra mbuna  =============
       Burton's mouthbreeder  =============
         Princess of Burundi  =============
B D              Nile tilapia  =============
  D            Painted turtle  =============
  D           Green seaturtle  =============
B D        American alligator  =============
B D                Budgerigar  =============
B D                   Opossum  =============
  D               Rock pigeon  =============
  D       Collared flycatcher  =============
B D       Medium ground finch  =============
B D                    Lizard  =============
  D          Peregrine falcon  =============
  D              Saker falcon  =============
B D                  Platypus  =============
B D           Chinese hamster  =============
  D  Chinese softshell turtle  =============
B D                   Ferret   =============
B D                       Cow  =============

Alignment block 17 of 889 in window, 39345273 - 39345276, 4 bps 
B D                     Human  cttt
B D                     Chimp  cttt
B D                   Gorilla  cttt
B D                 Orangutan  cttt
B D                    Gibbon  tctt
B D                    Rhesus  cttt
B D       Crab-eating macaque  cttt
B D                    Baboon  cttt
B D              Green monkey  cttt
B D                  Marmoset  cttt
B D           Squirrel monkey  cttt
B D                  Bushbaby  tctt
           Chinese tree shrew  ccta
B D                  Squirrel  cctt
B D            Naked mole-rat  tcct
                   Chinchilla  cctt
             Brush-tailed rat  --tt
B D                    Rabbit  gttt
B D                       Pig  cctt
B D                    Alpaca  cttt
               Bactrian camel  cctt
B D                   Dolphin  cctt
                 Killer whale  cctt
             Tibetan antelope  cctt
B D                     Sheep  cctt
                Domestic goat  cctt
B D                     Horse  cctt
B D          White rhinoceros  cctt
B D                       Cat  cttt
B D                       Dog  cttt
B D                     Panda  cttt
               Pacific walrus  cttt
                 Weddell seal  cttt
             Black flying-fox  cctt
B D                   Megabat  cctt
                Big brown bat  cctt
         David's myotis (bat)  cctt
B D                  Microbat  cctt
              Star-nosed mole  ccct
B D                  Elephant  cttt
B D                   Manatee  cttt
B D                    Tenrec  cttt
                     Aardvark  cttt
B D                 Armadillo  cctt
B D                   Wallaby  ccct
B D                       Rat  ====
                Prairie vole  ====
              Golden hamster  ====
B D                     Mouse  ====
      Lesser Egyptian jerboa  ====
B D                      Pika  ====
B D                  Hedgehog  ----
B D                     Shrew  ====
B D                Guinea pig  ====
B D                   Lamprey  ====
            Cape golden mole  ====
B D                Coelacanth  ====
  D    Spiny softshell turtle  ----
B D             X. tropicalis  ====
B D              Atlantic cod  ====
                 Spotted gar  ====
B D               Stickleback  ====
          Southern platyfish  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
B D                 Tetraodon  ====
B D                    Turkey  ====
B D                   Chicken  ====
  D              Mallard duck  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
  D    White-throated sparrow  ====
B D           Tasmanian devil  ====
    Mexican tetra (cavefish)  ====
B D                 Zebrafish  ====
B D                    Medaka  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
  D            Painted turtle  ====
  D           Green seaturtle  ====
B D        American alligator  ====
B D                Budgerigar  ====
B D                   Opossum  ====
  D               Rock pigeon  ====
  D       Collared flycatcher  ====
B D       Medium ground finch  ====
B D                    Lizard  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
         Cape elephant shrew  ----
B D                  Platypus  ====
B D           Chinese hamster  ====
  D  Chinese softshell turtle  ====
B D                   Ferret   ====
B D                       Cow  ====

Inserts between block 17 and 18 in window
B D                   Rhesus 2bp
B D      Crab-eating macaque 2bp
B D                   Baboon 2bp
B D             Green monkey 2bp
B D                 Marmoset 2bp
B D          Squirrel monkey 2bp
B D                 Bushbaby 2bp
          Chinese tree shrew 2bp
B D                 Squirrel 2bp
B D           Naked mole-rat 2bp
                  Chinchilla 2bp
            Brush-tailed rat 2bp
B D                   Rabbit 2bp
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 2bp
B D                    Sheep 2bp
               Domestic goat 2bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 21bp
             Star-nosed mole 2bp

Alignment block 18 of 889 in window, 39345277 - 39345278, 2 bps 
B D                     Human  ca
B D                     Chimp  ca
B D                   Gorilla  ca
B D                 Orangutan  ca
B D                    Gibbon  ca
B D                    Rhesus  ca
B D       Crab-eating macaque  ca
B D                    Baboon  ca
B D              Green monkey  ca
B D                  Marmoset  ca
B D           Squirrel monkey  ca
B D                  Bushbaby  ca
           Chinese tree shrew  aa
B D                  Squirrel  cg
B D            Naked mole-rat  ta
                   Chinchilla  ta
             Brush-tailed rat  ta
B D                    Rabbit  ca
B D                       Pig  ca
B D                    Alpaca  ca
               Bactrian camel  ca
B D                   Dolphin  ca
                 Killer whale  ca
             Tibetan antelope  ca
B D                     Sheep  ca
                Domestic goat  ca
B D                     Horse  ca
B D          White rhinoceros  ca
B D                       Cat  ca
B D                     Panda  ta
               Pacific walrus  ta
                 Weddell seal  ta
             Black flying-fox  ta
B D                   Megabat  ta
                Big brown bat  ca
         David's myotis (bat)  ca
B D                  Microbat  ca
              Star-nosed mole  c-
B D                  Elephant  ca
B D                   Manatee  ca
B D                    Tenrec  ca
                     Aardvark  ca
B D                 Armadillo  ca
B D                   Wallaby  ca
B D                       Rat  ==
                Prairie vole  ==
              Golden hamster  ==
B D                     Mouse  ==
      Lesser Egyptian jerboa  ==
B D                      Pika  ==
B D                  Hedgehog  --
B D                     Shrew  ==
B D                Guinea pig  ==
B D                   Lamprey  ==
            Cape golden mole  ==
B D                Coelacanth  ==
  D    Spiny softshell turtle  --
B D             X. tropicalis  ==
B D              Atlantic cod  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                    Turkey  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
B D           Tasmanian devil  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D        American alligator  ==
B D                Budgerigar  ==
B D                   Opossum  ==
  D               Rock pigeon  ==
  D       Collared flycatcher  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
         Cape elephant shrew  --
B D                  Platypus  ==
B D           Chinese hamster  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
B D                       Dog  ==
B D                       Cow  ==

Inserts between block 18 and 19 in window
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 2bp
B D                    Panda 3bp
              Pacific walrus 3bp
                Weddell seal 20bp
            Black flying-fox 2bp
B D                  Megabat 2bp
               Big brown bat 2bp
        David's myotis (bat) 2bp
B D                 Microbat 2bp
B D                 Elephant 110bp
B D                  Manatee 2bp
B D                   Tenrec 2bp
                    Aardvark 2bp
B D                Armadillo 1bp

Alignment block 19 of 889 in window, 39345279 - 39345287, 9 bps 
B D                     Human  gtttaaaaa
B D                     Chimp  gtttaaaaa
B D                   Gorilla  gtttaaaaa
B D                 Orangutan  gctttaaaa
B D                    Gibbon  gttt-aaaa
B D                    Rhesus  gttttaaaa
B D       Crab-eating macaque  gttttaaaa
B D                    Baboon  gttttaaaa
B D              Green monkey  gttttaaaa
B D                  Marmoset  gtttaaaaa
B D           Squirrel monkey  gtttaaaaa
B D                  Bushbaby  gtttaaaaa
           Chinese tree shrew  gattaaaa-
B D                  Squirrel  gtttaa-aa
B D            Naked mole-rat  gtttaagaa
                   Chinchilla  gtttaaaaa
             Brush-tailed rat  gattaagag
B D                    Rabbit  gatcaaaaa
B D                       Pig  atattaa--
B D                    Alpaca  gttttaaaa
               Bactrian camel  gttttaaaa
B D                   Dolphin  gttttaaaa
                 Killer whale  gttttaaaa
             Tibetan antelope  gttttaaaa
B D                     Sheep  gttttaaaa
                Domestic goat  gttttaaaa
B D                     Horse  -ttttaaaa
B D          White rhinoceros  -ttttaaaa
B D                       Cat  -ttttaaaa
B D                     Panda  -ccttaaaa
               Pacific walrus  -ccttaaaa
             Black flying-fox  gttttaaaa
B D                   Megabat  gttttaaaa
                Big brown bat  gttctaaaa
         David's myotis (bat)  gttgtaaaa
B D                  Microbat  gttgtaaaa
              Star-nosed mole  atttaaaaa
B D                   Manatee  gttttaata
B D                    Tenrec  gtcttatta
                     Aardvark  gttttaata
B D                 Armadillo  atttcaaaa
B D                   Wallaby  gtgtaaagt
B D                       Rat  =========
                Prairie vole  =========
              Golden hamster  =========
B D                     Mouse  =========
      Lesser Egyptian jerboa  =========
B D                      Pika  =========
                Weddell seal  =========
B D                  Hedgehog  ---------
B D                     Shrew  =========
B D                Guinea pig  =========
B D                   Lamprey  =========
            Cape golden mole  =========
B D                Coelacanth  =========
  D    Spiny softshell turtle  ---------
B D             X. tropicalis  =========
B D              Atlantic cod  =========
                 Spotted gar  =========
B D               Stickleback  =========
          Southern platyfish  =========
      Yellowbelly pufferfish  =========
B D                      Fugu  =========
B D                 Tetraodon  =========
B D                    Turkey  =========
B D                   Chicken  =========
  D              Mallard duck  =========
          Tibetan ground jay  =========
B D               Zebra finch  =========
  D    White-throated sparrow  =========
B D           Tasmanian devil  =========
    Mexican tetra (cavefish)  =========
B D                 Zebrafish  =========
B D                    Medaka  =========
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
         Princess of Burundi  =========
B D              Nile tilapia  =========
  D            Painted turtle  =========
  D           Green seaturtle  =========
B D        American alligator  =========
B D                Budgerigar  =========
B D                   Opossum  =========
  D               Rock pigeon  =========
  D       Collared flycatcher  =========
B D       Medium ground finch  =========
B D                    Lizard  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
         Cape elephant shrew  ---------
B D                  Platypus  =========
B D                  Elephant  =========
B D           Chinese hamster  =========
  D  Chinese softshell turtle  =========
B D                   Ferret   =========
B D                       Dog  =========
B D                       Cow  =========

Inserts between block 19 and 20 in window
            Tibetan antelope 59bp
B D                    Sheep 59bp
               Domestic goat 59bp

Alignment block 20 of 889 in window, 39345288 - 39345305, 18 bps 
B D                     Human  atagtataaacagcatca
B D                     Chimp  atagtataaacagcatca
B D                   Gorilla  atagtataaacagcatca
B D                 Orangutan  atagtataaacagtataa
B D                    Gibbon  atggtataaacagcataa
B D                    Rhesus  atagtataaacagcatca
B D       Crab-eating macaque  atagtataaacagcatca
B D                    Baboon  atagtataaacagcatca
B D              Green monkey  atagtataaacagcatca
B D                  Marmoset  atagtataaacagcatta
B D           Squirrel monkey  atagtataaacagcacta
B D                  Bushbaby  tc--tataaataccacta
           Chinese tree shrew  --tgtatgaacaaaattg
B D                  Squirrel  --tatataaatggcattg
B D            Naked mole-rat  --tgtataaatagcaatt
                   Chinchilla  --tgtat-aatagcattt
             Brush-tailed rat  --tatgc-aaaagcattt
B D                    Rabbit  --tgtatgagcggggcca
B D                       Pig  aatgtgtaagcaatgcta
B D                    Alpaca  --tgtataaaca------
               Bactrian camel  --tgtataaaca------
B D                   Dolphin  --tgtgtaagcaacatta
                 Killer whale  --tgtataagcaacatta
B D                     Horse  --tatatgagcaacatta
B D          White rhinoceros  --tatatgagcaacatta
B D                       Cat  --tgtataagcaacatca
B D                     Panda  --tatgtaggccacatta
               Pacific walrus  --tgtgtaagcaacatta
             Black flying-fox  --tgtataagcaacatta
B D                   Megabat  --tgtataagcaacatta
                Big brown bat  --tgtataagcaacatta
         David's myotis (bat)  --tgtataagcaacatta
B D                  Microbat  --tgtataagcaacatta
              Star-nosed mole  -atatagaaagaacatta
B D                   Manatee  --tgtataagcaacatta
B D                    Tenrec  --tgtataagtaacagta
                     Aardvark  --tgtataagcaacatta
B D                 Armadillo  --tgtataagcagcatta
B D                   Wallaby  ---atagcagcaacatca
B D                       Rat  ==================
                Prairie vole  ==================
              Golden hamster  ==================
B D                     Mouse  ==================
      Lesser Egyptian jerboa  ==================
B D                      Pika  ==================
                Weddell seal  ==================
B D                  Hedgehog  ------------------
B D                     Shrew  ==================
B D                Guinea pig  ==================
B D                   Lamprey  ==================
            Cape golden mole  ==================
B D                Coelacanth  ==================
  D    Spiny softshell turtle  ------------------
B D             X. tropicalis  ==================
B D              Atlantic cod  ==================
                 Spotted gar  ==================
B D               Stickleback  ==================
          Southern platyfish  ==================
      Yellowbelly pufferfish  ==================
B D                      Fugu  ==================
B D                 Tetraodon  ==================
B D                    Turkey  ==================
B D                   Chicken  ==================
  D              Mallard duck  ==================
          Tibetan ground jay  ==================
B D               Zebra finch  ==================
  D    White-throated sparrow  ==================
B D           Tasmanian devil  ==================
    Mexican tetra (cavefish)  ==================
B D                 Zebrafish  ==================
B D                    Medaka  ==================
         Pundamilia nyererei  ==================
                 Zebra mbuna  ==================
       Burton's mouthbreeder  ==================
         Princess of Burundi  ==================
B D              Nile tilapia  ==================
  D            Painted turtle  ==================
  D           Green seaturtle  ==================
B D        American alligator  ==================
B D                Budgerigar  ==================
B D                   Opossum  ==================
  D               Rock pigeon  ==================
  D       Collared flycatcher  ==================
B D       Medium ground finch  ==================
B D                    Lizard  ==================
  D          Peregrine falcon  ==================
  D              Saker falcon  ==================
         Cape elephant shrew  ------------------
B D                  Platypus  ==================
B D                  Elephant  ==================
B D           Chinese hamster  ==================
  D  Chinese softshell turtle  ==================
B D                   Ferret   ==================
               Domestic goat  ==================
B D                     Sheep  ==================
            Tibetan antelope  ==================
B D                       Dog  ==================
B D                       Cow  ==================

Inserts between block 20 and 21 in window
B D           Naked mole-rat 1bp
                  Chinchilla 1bp
            Brush-tailed rat 1bp
B D                   Rabbit 311bp

Alignment block 21 of 889 in window, 39345306 - 39345308, 3 bps 
B D                     Human  -ttt
B D                     Chimp  -ttt
B D                   Gorilla  -ttt
B D                 Orangutan  -ttt
B D                    Gibbon  -ttt
B D                    Rhesus  -ttt
B D       Crab-eating macaque  -ttt
B D                    Baboon  -ttt
B D              Green monkey  -ttt
B D                  Marmoset  -ttt
B D           Squirrel monkey  -ttt
B D                  Bushbaby  -ttc
           Chinese tree shrew  -ttt
B D            Naked mole-rat  -ttt
                   Chinchilla  -ttt
             Brush-tailed rat  -ttt
B D                       Pig  -ttt
B D                   Dolphin  -ttt
                 Killer whale  -ttt
B D                     Horse  -ttt
B D          White rhinoceros  -ttt
B D                       Cat  -ttt
B D                     Panda  -ttt
               Pacific walrus  -ttt
             Black flying-fox  -ttt
B D                   Megabat  -ttt
                Big brown bat  -ttt
         David's myotis (bat)  -ttt
B D                  Microbat  -ttt
              Star-nosed mole  -ttt
B D                   Manatee  -ttt
B D                    Tenrec  -ttt
                     Aardvark  -ttt
B D                 Armadillo  -ttt
B D                   Wallaby  gtg-
B D                       Rat  ====
                Prairie vole  ====
              Golden hamster  ====
B D                     Mouse  ====
      Lesser Egyptian jerboa  ====
B D                      Pika  ====
                Weddell seal  ====
B D                  Hedgehog  ----
B D                     Shrew  ====
B D                Guinea pig  ====
B D                    Rabbit  ====
B D                   Lamprey  ====
            Cape golden mole  ====
B D                Coelacanth  ====
  D    Spiny softshell turtle  ----
B D             X. tropicalis  ====
B D              Atlantic cod  ====
                 Spotted gar  ====
B D               Stickleback  ====
          Southern platyfish  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
B D                 Tetraodon  ====
B D                    Turkey  ====
B D                   Chicken  ====
  D              Mallard duck  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
  D    White-throated sparrow  ====
B D           Tasmanian devil  ====
    Mexican tetra (cavefish)  ====
B D                 Zebrafish  ====
B D                    Medaka  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
  D            Painted turtle  ====
  D           Green seaturtle  ====
B D        American alligator  ====
B D                Budgerigar  ====
B D                   Opossum  ====
  D               Rock pigeon  ====
  D       Collared flycatcher  ====
B D       Medium ground finch  ====
B D                    Lizard  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
         Cape elephant shrew  ----
B D                  Platypus  ====
B D                  Elephant  ====
B D           Chinese hamster  ====
  D  Chinese softshell turtle  ====
B D                   Ferret   ====
               Domestic goat  ====
B D                     Sheep  ====
            Tibetan antelope  ====
              Bactrian camel  ----
B D                    Alpaca  ----
B D                       Dog  ====
B D                  Squirrel  ----
B D                       Cow  ====

Alignment block 22 of 889 in window, 39345309 - 39345309, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  g
B D                  Bushbaby  a
           Chinese tree shrew  a
B D            Naked mole-rat  a
                   Chinchilla  a
             Brush-tailed rat  a
B D                       Pig  c
B D                   Dolphin  a
                 Killer whale  a
B D                     Horse  g
B D                       Cat  a
B D                     Panda  a
               Pacific walrus  a
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  a
         David's myotis (bat)  a
B D                  Microbat  a
              Star-nosed mole  a
B D                   Manatee  a
B D                    Tenrec  a
                     Aardvark  a
B D                 Armadillo  a
B D                   Wallaby  a
B D                       Rat  =
                Prairie vole  =
              Golden hamster  =
B D                     Mouse  =
      Lesser Egyptian jerboa  =
B D                      Pika  =
                Weddell seal  =
B D                  Hedgehog  -
B D                     Shrew  =
B D                Guinea pig  =
B D                    Rabbit  =
B D                   Lamprey  =
            Cape golden mole  =
B D                Coelacanth  =
  D    Spiny softshell turtle  -
B D             X. tropicalis  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
         Cape elephant shrew  -
B D                  Platypus  =
B D                  Elephant  =
B D           Chinese hamster  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
              Bactrian camel  -
B D                    Alpaca  -
B D                       Dog  =
B D          White rhinoceros  -
B D                  Squirrel  -
B D                       Cow  =

Inserts between block 22 and 23 in window
                Killer whale 2bp

Alignment block 23 of 889 in window, 39345310 - 39345311, 2 bps 
B D                     Human  ct
B D                     Chimp  ct
B D                   Gorilla  ct
B D                 Orangutan  ct
B D                    Gibbon  ct
B D                    Rhesus  ct
B D       Crab-eating macaque  ct
B D                    Baboon  ct
B D              Green monkey  ct
B D                  Marmoset  ct
B D           Squirrel monkey  ct
B D                  Bushbaby  ct
           Chinese tree shrew  ct
B D                  Squirrel  -t
B D            Naked mole-rat  ct
                   Chinchilla  ct
             Brush-tailed rat  ct
B D                       Pig  ct
B D                   Dolphin  ct
B D                     Horse  ct
B D                       Cat  ct
B D                     Panda  ct
               Pacific walrus  ct
             Black flying-fox  ct
                Big brown bat  ct
         David's myotis (bat)  ct
B D                  Microbat  ct
              Star-nosed mole  gt
B D                   Manatee  ct
B D                    Tenrec  ct
                     Aardvark  ct
B D                 Armadillo  ct
B D                   Wallaby  ct
B D                       Rat  ==
                Prairie vole  ==
              Golden hamster  ==
B D                     Mouse  ==
      Lesser Egyptian jerboa  ==
B D                      Pika  ==
                Weddell seal  ==
B D                  Hedgehog  --
B D                     Shrew  ==
B D                Guinea pig  ==
B D                    Rabbit  ==
B D                   Lamprey  ==
            Cape golden mole  ==
B D                Coelacanth  ==
  D    Spiny softshell turtle  --
B D                   Megabat  --
B D             X. tropicalis  ==
B D              Atlantic cod  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                    Turkey  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
B D           Tasmanian devil  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D        American alligator  ==
B D                Budgerigar  ==
B D                   Opossum  ==
  D               Rock pigeon  ==
  D       Collared flycatcher  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
         Cape elephant shrew  --
B D                  Platypus  ==
B D                  Elephant  ==
B D           Chinese hamster  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
              Bactrian camel  --
B D                    Alpaca  --
                Killer whale  ==
B D                       Dog  ==
B D          White rhinoceros  --
B D                       Cow  ==

Inserts between block 23 and 24 in window
B D                  Wallaby 1365bp

Alignment block 24 of 889 in window, 39345312 - 39345312, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  t
B D                  Squirrel  t
B D            Naked mole-rat  c
                   Chinchilla  c
             Brush-tailed rat  t
B D                       Pig  c
B D                   Dolphin  c
B D                     Horse  c
B D                       Cat  g
B D                     Panda  c
               Pacific walrus  c
             Black flying-fox  g
                Big brown bat  a
         David's myotis (bat)  g
B D                  Microbat  g
              Star-nosed mole  g
B D                   Manatee  c
B D                    Tenrec  c
                     Aardvark  c
B D                 Armadillo  c
B D                       Rat  =
                Prairie vole  =
              Golden hamster  =
B D                     Mouse  =
      Lesser Egyptian jerboa  =
B D                      Pika  =
                Weddell seal  =
B D                  Hedgehog  -
B D                     Shrew  =
B D                Guinea pig  =
B D                    Rabbit  =
B D                   Lamprey  =
            Cape golden mole  =
B D                Coelacanth  =
  D    Spiny softshell turtle  -
B D                   Megabat  -
B D             X. tropicalis  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
         Cape elephant shrew  -
B D                  Platypus  =
B D                   Wallaby  =
B D                  Elephant  =
B D           Chinese hamster  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
              Bactrian camel  -
B D                    Alpaca  -
                Killer whale  =
B D                       Dog  =
B D          White rhinoceros  -
B D                       Cow  =

Inserts between block 24 and 25 in window
B D                 Marmoset 1bp
B D                  Manatee 1bp
B D                   Tenrec 1bp
                    Aardvark 1bp
B D                Armadillo 1bp

Alignment block 25 of 889 in window, 39345313 - 39345313, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Bushbaby  t
           Chinese tree shrew  a
B D                  Squirrel  t
B D            Naked mole-rat  t
                   Chinchilla  t
             Brush-tailed rat  t
B D                       Pig  t
B D                    Alpaca  a
               Bactrian camel  a
B D                   Dolphin  t
B D                     Horse  t
B D                       Cat  t
B D                     Panda  t
               Pacific walrus  t
             Black flying-fox  t
                Big brown bat  t
         David's myotis (bat)  t
B D                  Microbat  t
              Star-nosed mole  t
B D                       Rat  =
                Prairie vole  =
              Golden hamster  =
B D                     Mouse  =
      Lesser Egyptian jerboa  =
B D                      Pika  =
                Weddell seal  =
B D                  Hedgehog  -
B D                     Shrew  =
B D                Guinea pig  =
B D                    Rabbit  =
B D                   Lamprey  =
            Cape golden mole  =
                    Aardvark  =
B D                Coelacanth  =
  D    Spiny softshell turtle  -
B D                   Megabat  -
B D             X. tropicalis  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
         Cape elephant shrew  -
B D                  Platypus  =
B D                   Wallaby  =
B D                   Manatee  =
B D                  Elephant  =
B D           Chinese hamster  =
B D                    Tenrec  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
                Killer whale  =
B D                       Dog  =
B D          White rhinoceros  -
B D                 Armadillo  =
B D                       Cow  =

Alignment block 26 of 889 in window, 39345314 - 39345319, 6 bps 
B D                     Human  gaaaat
B D                     Chimp  gaaaat
B D                   Gorilla  gaaaat
B D                 Orangutan  gaaaat
B D                    Gibbon  gaaaat
B D                    Rhesus  aaaaat
B D       Crab-eating macaque  aaaaat
B D                    Baboon  aaaaat
B D              Green monkey  aaaaat
B D                  Marmoset  aaaaat
B D           Squirrel monkey  aaaaat
B D                  Bushbaby  aaatat
           Chinese tree shrew  aaaaat
B D                  Squirrel  aaaaat
B D            Naked mole-rat  aaaaat
                   Chinchilla  aaaaat
             Brush-tailed rat  aaaaat
B D                       Pig  gaaagt
B D                    Alpaca  aaaaaa
               Bactrian camel  aaaaaa
B D                   Dolphin  aaaagt
B D                       Cat  ca----
B D                     Panda  aaaaat
               Pacific walrus  aaaaa-
             Black flying-fox  aaaaat
                Big brown bat  aaaaat
         David's myotis (bat)  aaaaat
B D                  Microbat  aaaaat
              Star-nosed mole  aaaaat
B D                   Manatee  aaaaat
                     Aardvark  aaaaat
B D                       Rat  ======
                Prairie vole  ======
              Golden hamster  ======
B D                     Mouse  ======
      Lesser Egyptian jerboa  ======
B D                      Pika  ======
                Weddell seal  ======
B D                  Hedgehog  ------
B D                     Shrew  ======
B D                Guinea pig  ======
B D                    Rabbit  ======
B D                   Lamprey  ======
            Cape golden mole  ======
B D                Coelacanth  ======
  D    Spiny softshell turtle  ------
B D                   Megabat  ------
B D             X. tropicalis  ======
B D              Atlantic cod  ======
                 Spotted gar  ======
B D               Stickleback  ======
          Southern platyfish  ======
      Yellowbelly pufferfish  ======
B D                      Fugu  ======
B D                 Tetraodon  ======
B D                    Turkey  ======
B D                   Chicken  ======
  D              Mallard duck  ======
          Tibetan ground jay  ======
B D               Zebra finch  ======
  D    White-throated sparrow  ======
B D           Tasmanian devil  ======
    Mexican tetra (cavefish)  ======
B D                 Zebrafish  ======
B D                    Medaka  ======
         Pundamilia nyererei  ======
                 Zebra mbuna  ======
       Burton's mouthbreeder  ======
         Princess of Burundi  ======
B D              Nile tilapia  ======
  D            Painted turtle  ======
  D           Green seaturtle  ======
B D        American alligator  ======
B D                Budgerigar  ======
B D                   Opossum  ======
  D               Rock pigeon  ======
  D       Collared flycatcher  ======
B D       Medium ground finch  ======
B D                    Lizard  ======
  D          Peregrine falcon  ======
  D              Saker falcon  ======
         Cape elephant shrew  ------
B D                  Platypus  ======
B D                   Wallaby  ======
B D                  Elephant  ======
B D           Chinese hamster  ======
B D                    Tenrec  ======
  D  Chinese softshell turtle  ======
B D                   Ferret   ======
               Domestic goat  ======
B D                     Sheep  ======
            Tibetan antelope  ======
                Killer whale  ======
B D                       Dog  ======
B D          White rhinoceros  ------
B D                     Horse  ------
B D                 Armadillo  ======
B D                       Cow  ======

Inserts between block 26 and 27 in window
B D                      Cat 1bp

Alignment block 27 of 889 in window, 39345320 - 39345320, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
B D                  Squirrel  c
B D            Naked mole-rat  c
                   Chinchilla  c
             Brush-tailed rat  c
B D                       Pig  c
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  c
B D                     Panda  c
             Black flying-fox  c
                Big brown bat  c
         David's myotis (bat)  c
B D                  Microbat  c
B D                   Manatee  c
                     Aardvark  c
B D                       Rat  =
                Prairie vole  =
              Golden hamster  =
B D                     Mouse  =
      Lesser Egyptian jerboa  =
B D                      Pika  =
                Weddell seal  =
B D                  Hedgehog  -
B D                     Shrew  =
B D                Guinea pig  =
B D                    Rabbit  =
B D                   Lamprey  =
            Cape golden mole  =
B D                Coelacanth  =
  D    Spiny softshell turtle  -
B D                   Megabat  -
B D             X. tropicalis  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
         Cape elephant shrew  -
          Chinese tree shrew  -
B D                  Platypus  =
B D                   Wallaby  =
B D                  Elephant  =
B D           Chinese hamster  =
B D                    Tenrec  =
B D                       Cat  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
             Star-nosed mole  -
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
              Pacific walrus  -
                Killer whale  =
B D                       Dog  =
B D          White rhinoceros  -
B D                     Horse  -
B D                 Armadillo  =
B D                       Cow  =

Alignment block 28 of 889 in window, 39345321 - 39345321, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                       Pig  a
B D                     Panda  a
                Big brown bat  a
         David's myotis (bat)  a
B D                  Microbat  a
B D                   Manatee  a
                     Aardvark  a
B D                       Rat  =
                Prairie vole  =
              Golden hamster  =
B D                     Mouse  =
      Lesser Egyptian jerboa  =
B D                      Pika  =
                Weddell seal  =
B D                  Hedgehog  -
B D                     Shrew  =
B D                Guinea pig  =
B D                    Rabbit  =
B D                   Lamprey  =
            Cape golden mole  =
B D                Coelacanth  =
  D    Spiny softshell turtle  -
B D                   Megabat  -
B D                   Dolphin  -
B D             X. tropicalis  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  -
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
            Brush-tailed rat  -
                  Chinchilla  -
         Cape elephant shrew  -
          Chinese tree shrew  -
B D                  Platypus  =
B D                   Wallaby  =
B D                  Elephant  =
B D           Chinese hamster  =
B D                    Tenrec  =
B D                       Cat  =
B D                  Bushbaby  -
  D  Chinese softshell turtle  =
B D                   Ferret   =
             Star-nosed mole  -
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
              Bactrian camel  -
B D                    Alpaca  -
              Pacific walrus  -
                Killer whale  =
B D                       Dog  =
            Black flying-fox  -
B D          White rhinoceros  -
B D                     Horse  -
B D                  Squirrel  -
B D                 Armadillo  =
B D                       Cow  =

Inserts between block 28 and 29 in window
B D                    Panda 4bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp

Alignment block 29 of 889 in window, 39345322 - 39345322, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Squirrel  a
B D            Naked mole-rat  a
                   Chinchilla  a
             Brush-tailed rat  a
B D                       Pig  a
B D                   Manatee  a
                     Aardvark  a
B D                       Rat  =
                Prairie vole  =
              Golden hamster  =
B D                     Mouse  =
      Lesser Egyptian jerboa  =
B D                      Pika  =
                Weddell seal  =
B D                  Hedgehog  -
B D                     Shrew  =
B D                Guinea pig  =
B D                    Rabbit  =
B D                   Lamprey  =
            Cape golden mole  =
B D                Coelacanth  =
  D    Spiny softshell turtle  -
B D                   Megabat  -
B D                   Dolphin  -
B D             X. tropicalis  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
         Cape elephant shrew  -
          Chinese tree shrew  -
B D                  Platypus  =
B D                   Wallaby  =
B D                  Elephant  =
B D           Chinese hamster  =
B D                    Tenrec  =
B D                       Cat  =
B D                  Bushbaby  -
  D  Chinese softshell turtle  =
B D                   Ferret   =
             Star-nosed mole  -
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
              Bactrian camel  -
B D                    Alpaca  -
              Pacific walrus  -
B D                     Panda  =
                Killer whale  =
B D                       Dog  =
            Black flying-fox  -
B D          White rhinoceros  -
B D                     Horse  -
B D                 Armadillo  =
        David's myotis (bat)  =
               Big brown bat  =
B D                  Microbat  =
B D                       Cow  =

Alignment block 30 of 889 in window, 39345323 - 39345323, 1 bps 
B D                     Human  -a
B D                     Chimp  -a
B D                   Gorilla  -a
B D                 Orangutan  -a
B D                    Gibbon  -a
B D                    Rhesus  -a
B D       Crab-eating macaque  -a
B D                    Baboon  -a
B D              Green monkey  -a
B D                  Marmoset  -a
B D           Squirrel monkey  -a
B D                  Squirrel  -a
B D            Naked mole-rat  -g
                   Chinchilla  -a
             Brush-tailed rat  -a
B D                       Pig  -a
B D                       Cat  -a
         David's myotis (bat)  -g
B D                  Microbat  -a
B D                   Manatee  c-
                     Aardvark  t-
B D                       Rat  ==
                Prairie vole  ==
              Golden hamster  ==
B D                     Mouse  ==
      Lesser Egyptian jerboa  ==
B D                      Pika  ==
                Weddell seal  ==
B D                  Hedgehog  --
B D                     Shrew  ==
B D                Guinea pig  ==
B